mRNA_Ecto-sp13_S_contig8659.20099.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8659.20099.1
Unique NamemRNA_Ecto-sp13_S_contig8659.20099.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: D7FV06_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV06_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.230e-41
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    7 PEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            P  EDS+FECNICL+GV+EP+VTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTA NVIPLYGRG +
Sbjct:    8 PGEEDSYFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVIPLYGRGAE 73          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A6H5JXT6_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.400e-40
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 1
Query:   13 GEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            GEDS FECNICL+GV+EP+VTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTA NV+P+YGRG +
Sbjct:   17 GEDSCFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVVPIYGRGAE 80          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A835ZFB6_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.830e-36
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   10 EGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            +  DS FECNICL+ V EP+VTRCGHLFCWPCLYRWLNTN TECPVCKAGV+  NVIPLYGRG D
Sbjct:    9 DSRDSRFECNICLDHVNEPVVTRCGHLFCWPCLYRWLNTNHTECPVCKAGVSCDNVIPLYGRGQD 73          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A7R9YCR0_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCR0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.660e-32
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1
Query:   28 FECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            FECNICL+ V++P+VT+CGHL+CWPCLYRWLNTN  +CPVCKAGVT  NVIPLY RG+D
Sbjct:   13 FECNICLDVVRDPVVTQCGHLYCWPCLYRWLNTNHYQCPVCKAGVTRENVIPLYVRGSD 71          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A7S2V596_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V596_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.550e-31
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    7 PEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            P  EDS FECNICL+ V EP+VTRCGHLFCW CLYRWLN N+T+CPVCKAGV+  NVIP+Y RG +
Sbjct:   96 PIEEDSRFECNICLDLVHEPVVTRCGHLFCWSCLYRWLNVNRTDCPVCKAGVSQDNVIPIYTRGAE 161          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: D8UF78_VOLCA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UF78_VOLCA)

HSP 1 Score: 109 bits (272), Expect = 1.100e-29
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 DYPEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTE--CPVCKAGVTAMNVIPLYGRGTD 204
            D+ EG+ S FECNICLE  KEP+VT CGHLFCWPCLYRW+        CPVCKAGV    V+P+YGRG++
Sbjct:    4 DHSEGDSSAFECNICLELAKEPVVTLCGHLFCWPCLYRWMQVQACSRACPVCKAGVEIDKVVPIYGRGSE 73          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: W4HDP2_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDP2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.930e-28
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    7 PEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            P+G  + F+CNICL+ VKEP+VT CGHL+CWPCLYRW+ +N  +CPVCKAGVT  NVIP+YGRG++
Sbjct:   17 PDGSHA-FDCNICLDHVKEPVVTLCGHLYCWPCLYRWICSNS-QCPVCKAGVTQDNVIPVYGRGSN 80          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A1Y1IV45_KLENI (RING-type E3 ubiquitin transferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IV45_KLENI)

HSP 1 Score: 110 bits (274), Expect = 3.180e-28
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   13 GEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQT--ECPVCKAGVTAMNVIPLYGRGTD 204
            GE   FECNICLE  ++P+VT CGHLFCWPCLYRWL  +    ECPVCKAGV+  NVIPLYGRGT 
Sbjct:   64 GEGGSFECNICLELAQDPVVTLCGHLFCWPCLYRWLRLHSQCKECPVCKAGVSEKNVIPLYGRGTS 129          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: W7TVM5_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVM5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.820e-28
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1
Query:   19 DSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            DS F+CN+CL  V +P+VT CGHL+CWPCLYRWL+TN T CPVCKAGVT  NVIPLYGRG++
Sbjct:   98 DSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT-CPVCKAGVTKENVIPLYGRGSE 158          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A1V9Z912_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z912_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.130e-28
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   10 EGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 204
            +G  S F+CNIC++ VKEP+VT CGHL+CWPCL++W+  N  +CPVCKAGVT+ NVIP+YGRG +
Sbjct:    2 DGAASDFDCNICIDRVKEPVVTLCGHLYCWPCLFQWI-ANHNDCPVCKAGVTSENVIPVYGRGAN 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV06_ECTSI1.230e-4186.36RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JXT6_9PHAE3.400e-4085.94RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835ZFB6_9STRA2.830e-3680.00RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7R9YCR0_9STRA2.660e-3276.27RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S2V596_9STRA2.550e-3172.73RING-type E3 ubiquitin transferase n=1 Tax=Fibroca... [more]
D8UF78_VOLCA1.100e-2962.86RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
W4HDP2_9STRA1.930e-2866.67RING-type E3 ubiquitin transferase n=2 Tax=Aphanom... [more]
A0A1Y1IV45_KLENI3.180e-2869.70RING-type E3 ubiquitin transferase n=1 Tax=Klebsor... [more]
W7TVM5_9STRA3.820e-2872.58RING-type E3 ubiquitin transferase n=1 Tax=Nannoch... [more]
A0A1V9Z912_9STRA6.130e-2863.08RING-type E3 ubiquitin transferase n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8659contigEcto-sp13_S_contig8659:1714..2627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.4
Seed ortholog evalue6.1e-31
Seed eggNOG ortholog2880.D7FV06
Preferred nameRNF5
Model size204
KEGG koko:K05744,ko:K10666
KEGG Pathwayko04141,ko04360,ko04666,ko04810,map04141,map04360,map04666,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005740,GO:0005783,GO:0005789,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006517,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009056,GO:0009057,GO:0009100,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010506,GO:0010507,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016241,GO:0016477,GO:0016567,GO:0016740,GO:0018996,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030054,GO:0030154,GO:0030163,GO:0030433,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031647,GO:0031648,GO:0031966,GO:0031967,GO:0031975,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033554,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036513,GO:0040011,GO:0040039,GO:0042175,GO:0042221,GO:0042303,GO:0042692,GO:0042802,GO:0043144,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043412,GO:0043632,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051603,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051788,GO:0051865,GO:0055001,GO:0055002,GO:0055085,GO:0055120,GO:0061061,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070534,GO:0070647,GO:0070887,GO:0070936,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0090304,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902115,GO:1904380,GO:1990904,GO:2000785
Exons2
EggNOG free text desc.cAMP binding
EggNOG OGsCOG5574@1,KOG0823@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-sdr_f_000070.1
EC2.3.2.27,2.7.11.1
Cds size204
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.6995544-CDS-Ecto-sp13_S_contig8659:1713..18031681464137.6995544-CDS-Ecto-sp13_S_contig8659:1713..1803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8659 1714..1803 -
1681464137.7154708-CDS-Ecto-sp13_S_contig8659:2513..26271681464137.7154708-CDS-Ecto-sp13_S_contig8659:2513..2627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8659 2514..2627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8659.20099.1prot_Ecto-sp13_S_contig8659.20099.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8659 1714..2627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8659.20099.1

>prot_Ecto-sp13_S_contig8659.20099.1 ID=prot_Ecto-sp13_S_contig8659.20099.1|Name=mRNA_Ecto-sp13_S_contig8659.20099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
DYPEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVC
KAGVTAMNVIPLYGRGTD
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mRNA from alignment at Ecto-sp13_S_contig8659:1714..2627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8659.20099.1 ID=mRNA_Ecto-sp13_S_contig8659.20099.1|Name=mRNA_Ecto-sp13_S_contig8659.20099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8659:1714..2627- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTACCCAGAAGGGGAGGATTCATGGTTCGAATGCAACATCTGCCTGGA AGGAGTGAAGGAGCCTATAGTAACGCGTTGCGGTCATCTGTTCTGCTGGC CATGCTTATACCGGGTGAGGACAACATACGTGTTGTGAATGGTATGGAAT TTTTTTCTTGCAGTTCCAAAACTGTATGTGCGAAAAATCTCCTGTAGTGC TGATCCATAGGTCAGCCCAAGCGGGAATTACTCTTGATTGAGTTCCGTAG ACCCCGTCCAAACTCAGAGGCCTATTGAAGTTTGCTATTGGGCGTTGGAT TGTATTGTTGTATGATGACATCAAGGTTGTACCGCCGCCGATTACCAGGT ATGGTTGGGCGGTTTAGTACGAAAAAGACCACTGCTGCGAAGCAGCGCTC ACAACTTTTGAATGGGTCAGGCAGTGTACCTCGTGTGAAAGCAAACGCAC GATGCAAACCACCCCGTACTCTGACGAGCCACATCCTGGAGCAGCATATG TTATGTGGCATGGAAAATATTGCTTGCCGTGGCTGACAATAATTCGCATT TGGAGGCAACTAGTTTCCTTTGCTGGAGGTACCCAGACGTTCAAACATAA GATTGCAGTCCTCGTTGAAACCACGTTGTGCTCACATGAGCAAACGTGCG ACCGTTGTTCAGAACCTGTTCCGCTCTCTTGAAAGGCACATAAACAACGG AGTACCACCGTGCGCCTCTTGCCATCGATTGACTGAACTTTGGAAATAGA TTGGCTGGTGTTCCTCATTCGACTGTTTGCTTTGCTCCGGTGCACTTTAC CCGCCTCTTCTTTCTTGGTTGCAGTGGCTCAACACAAACCAAACGGAGTG TCCGGTGTGCAAGGCCGGAGTTACAGCCATGAACGTCATTCCTCTTTACG GGCGTGGAACAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8659:1714..2627-

>mRNA_Ecto-sp13_S_contig8659.20099.1 ID=mRNA_Ecto-sp13_S_contig8659.20099.1|Name=mRNA_Ecto-sp13_S_contig8659.20099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8659:1714..2627- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTACCCAGAAGGGGAGGATTCATGGTTCGAATGCAACATCTGCCTGGA
AGGAGTGAAGGAGCCTATAGTAACGCGTTGCGGTCATCTGTTCTGCTGGC
CATGCTTATACCGGTGGCTCAACACAAACCAAACGGAGTGTCCGGTGTGC
AAGGCCGGAGTTACAGCCATGAACGTCATTCCTCTTTACGGGCGTGGAAC
AGAC
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