mRNA_Ecto-sp13_S_contig86535.20094.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86535.20094.1
Unique NamemRNA_Ecto-sp13_S_contig86535.20094.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: D8LGE6_ECTSI (Enkurin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.020e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    4 AHMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPVLVCP 126
            AHMVNLDTFGKLRRKEQMETQLK LEKDIEKLEKTPVL+ P
Sbjct:  233 AHMVNLDTFGKLRRKEQMETQLKGLEKDIEKLEKTPVLIRP 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: A0A6H5LFQ2_9PHAE (Enkurin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFQ2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.960e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    4 AHMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPVLVCP 126
            AHMVNLDTFGKLRRKEQME QLK LEKDIEKLEKTPVL+ P
Sbjct:  220 AHMVNLDTFGKLRRKEQMEKQLKGLEKDIEKLEKTPVLISP 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: A0A8J2AIM7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2AIM7_9DINO)

HSP 1 Score: 48.5 bits (114), Expect = 2.490e-5
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 AHMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPVLVCP 126
            AH+  LDT GK+RRKEQ E  L  LEKDIEK++K  V+V P
Sbjct:  233 AHLTKLDTVGKMRRKEQQEKLLTQLEKDIEKMKKDNVVVDP 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: A0A8J1VZB8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1VZB8_9DINO)

HSP 1 Score: 48.1 bits (113), Expect = 3.400e-5
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 AHMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPVLVCP 126
            AH+  LDT GK+RRKEQ E  L  LEKDIE+++K  V+V P
Sbjct:  231 AHLTKLDTVGKMRRKEQQEKMLTQLEKDIERIKKENVVVDP 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: A0A2R5GCX3_9STRA (Enkurin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCX3_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 8.660e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 QAHMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPVLV 120
            QAH+VNLDT GK++RKE +E  LK +EK IE LE+ PV +
Sbjct:  145 QAHVVNLDTAGKIQRKEYLEKMLKRVEKAIETLERGPVQI 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: A0A813C9F8_9DINO (Enkur protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C9F8_9DINO)

HSP 1 Score: 47.0 bits (110), Expect = 9.030e-5
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    7 HMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPV 114
            H+ NLDT GKL+RKEQ E +L  LEKDIEKL K  +
Sbjct:  233 HVTNLDTMGKLKRKEQHEAELSQLEKDIEKLSKRSI 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Match: A0A1Q9DIK9_SYMMI (Beta-glucosidase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DIK9_SYMMI)

HSP 1 Score: 47.0 bits (110), Expect = 9.180e-5
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    7 HMVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPV 114
            H+ NLDT GKL+RKEQ E +L  LEKDIEKL K  +
Sbjct: 1894 HVTNLDTMGKLKRKEQHEAELSQLEKDIEKLSKRSI 1929
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86535.20094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LGE6_ECTSI6.020e-1592.68Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LFQ2_9PHAE1.960e-1490.24Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A8J2AIM7_9DINO2.490e-560.98Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J1VZB8_9DINO3.400e-558.54Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A2R5GCX3_9STRA8.660e-560.00Enkurin n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
A0A813C9F8_9DINO9.030e-563.89Enkur protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A1Q9DIK9_SYMMI9.180e-563.89Beta-glucosidase n=3 Tax=Symbiodinium TaxID=2949 R... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86535contigEcto-sp13_S_contig86535:340..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score69.7
Seed ortholog evalue3.5e-10
Seed eggNOG ortholog2880.D8LGE6
Preferred nameENKUR
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001669,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0012505,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0036126,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0097223,GO:0097228,GO:0097708,GO:0097729,GO:0099503,GO:0120025,GO:0120038
Exons1
EggNOG free text desc.Enkurin, TRPC channel interacting protein
EggNOG OGs28KS9@1,2QT8E@2759
Cds size120
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.431409-CDS-Ecto-sp13_S_contig86535:339..4591681464137.431409-CDS-Ecto-sp13_S_contig86535:339..459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86535 340..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.4447632-UTR-Ecto-sp13_S_contig86535:459..4681681464137.4447632-UTR-Ecto-sp13_S_contig86535:459..468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86535 460..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86535.20094.1prot_Ecto-sp13_S_contig86535.20094.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86535 340..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86535.20094.1

>prot_Ecto-sp13_S_contig86535.20094.1 ID=prot_Ecto-sp13_S_contig86535.20094.1|Name=mRNA_Ecto-sp13_S_contig86535.20094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
MVNLDTFGKLRRKEQMETQLKDLEKDIEKLEKTPVLVCP*
back to top

mRNA from alignment at Ecto-sp13_S_contig86535:340..468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86535.20094.1 ID=mRNA_Ecto-sp13_S_contig86535.20094.1|Name=mRNA_Ecto-sp13_S_contig86535.20094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86535:340..468- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGCACATGGTGAACCTTGACACTTTCGGTAAACTACGTCGTAAAGA
GCAAATGGAAACGCAGCTCAAGGATCTGGAGAAAGACATTGAAAAATTGG
AAAAGACACCGGTCCTCGTTTGCCCATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86535:340..468-

>mRNA_Ecto-sp13_S_contig86535.20094.1 ID=mRNA_Ecto-sp13_S_contig86535.20094.1|Name=mRNA_Ecto-sp13_S_contig86535.20094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86535:340..468- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAACCTTGACACTTTCGGTAAACTACGTCGTAAAGAGCAAATGGA
AACGCAGCTCAAGGATCTGGAGAAAGACATTGAAAAATTGGAAAAGACAC
CGGTCCTCGTTTGCCCATGA
back to top