mRNA_Ecto-sp13_S_contig864.20082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig864.20082.1
Unique NamemRNA_Ecto-sp13_S_contig864.20082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 707 bits (1824), Expect = 4.820e-234
Identity = 378/422 (89.57%), Postives = 390/422 (92.42%), Query Frame = 2 
Query:    2 GGGPREELPAHDMSVSPPEEGSAXXXXXXXXXXXXXXXXXXXXSPCSPPPLEPVSRSRGGSSNEGEEAMQPWGCLGGDSPPAPLIQFPFEPSAASGGGGHANGGEGGGLFDLNVGAGIAPVEGXXXXXXXXXXXGGVEWVMQGGEVIAQVDNAEMPLVAEVRLNLHRNFAHFFQMSNSGLWACVATGDTPMMCHRVAFIPLGEAKASPPKSTSTRPAAMSPGDPGGSXXXXXTGDDEKDVFIHVLRSGSGGDAASLQPKVTARRMEAVECGGAVLSVSVTRDDRFIMVNVRPFMKGALDKLHRPEGRYTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPKVR 1267
            GGG RE LPAHD+SVS PEE +A XXXXXXXXXXXX       S CSP PLEPVSRSRGGSS EGEEAMQPWGCLGGDSPPAPLIQ+PFEPSAASG GGHANGGEGG LFDLNVG GIA V+ XXXXXXX    GGVEWVMQGGEVIAQVD+AEMPLVAEVRLNL RNFAHFFQMSNSGLWACVATGDTPMMCHRVAFIPL EA ASPPKSTSTRPAAMSPGDPGGS     +G+DEKDVFIHVLRSGSGGDAASLQPKVTARRMEAVECGGAVLS+S+TRDDRFIMVNVRPFMKGALDKL+RPEGR+TAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGP+VR
Sbjct:  630 GGGSREGLPAHDLSVSLPEEAAAPXXXXXXXXXXXXTSFG---SSCSPTPLEPVSRSRGGSSIEGEEAMQPWGCLGGDSPPAPLIQYPFEPSAASGDGGHANGGEGGVLFDLNVGVGIAAVDDXXXXXXXENEEGGVEWVMQGGEVIAQVDDAEMPLVAEVRLNLRRNFAHFFQMSNSGLWACVATGDTPMMCHRVAFIPLMEATASPPKSTSTRPAAMSPGDPGGSDDDDGSGNDEKDVFIHVLRSGSGGDAASLQPKVTARRMEAVECGGAVLSLSLTRDDRFIMVNVRPFMKGALDKLYRPEGRHTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPRVR 1048
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 612 bits (1577), Expect = 4.650e-198
Identity = 354/429 (82.52%), Postives = 364/429 (84.85%), Query Frame = 2 
Query:    2 GGGPREELPAHDMSVSPPEEGSAXXXXXXXXXXXXXXXXXXXXSPCSPPPLEPVSRSRGGSSNEGEEAMQPWGCLGGDSPPAPLIQFPFEPSAASGGGGHANGGEG-GGLFDLNVGAGIAPVEGXXXXXXXXXXX---GGVEWVMQGGEVIAQVDNAEMPLVAEVRLNLHRNFAHFFQMSNSGLWACVATGDTPMMCHRVAFIPLGEAKASPPKSTSTRPAAMSPGDPGGSXXXXXTGDD---EKDVFIHVLRSGSGGDAASLQPKVTARRMEAVECGGAVLSVSVTRDDRFIMVNVRPFMKGALDKLHRPEGRYTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPKVR 1267
            GGGPREELPAHDMSVS PEE +      XXXXXXXXXXX    SP SPPPLEPVS S GGSSNEGEE MQPWGCLGGDS P PLIQ+PFEPSA+SG           GGLFDLNVG GIA VEGXXXXXXXXXXX   GGVEWVMQGGEVIAQVD+              +    FF  SNSG WACVATGDTPMMCHRVAFIPLGEA+ASPPKSTSTRPAA+SPGDPG S XXXX       EKDVFI VLRSGSGGDAASLQPKVTARRMEAVECGGAVLS+SVTRDDRFIMVNVRPFMKGALDKLHRPEGR+TAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGP+VR
Sbjct:  566 GGGPREELPAHDMSVSLPEEEAVAPAGAXXXXXXXXXXXPSFGSPFSPPPLEPVS-SHGGSSNEGEETMQPWGCLGGDSHPTPLIQYPFEPSASSGXXXXXXXXXXXGGLFDLNVGVGIAAVEGXXXXXXXXXXXDEEGGVEWVMQGGEVIAQVDDGGDAAGRRGSAQPSQELRAFFP-SNSGSWACVATGDTPMMCHRVAFIPLGEARASPPKSTSTRPAAISPGDPGVSDXXXXXXXXXXXEKDVFIRVLRSGSGGDAASLQPKVTARRMEAVECGGAVLSLSVTRDDRFIMVNVRPFMKGALDKLHRPEGRHTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPRVR 992
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A812MSZ5_9DINO (WDR26 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812MSZ5_9DINO)

HSP 1 Score: 100 bits (250), Expect = 3.130e-19
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2 
Query:  752 GDAASLQPKVTARRMEAVECGG-AVLSVSVTRDDRFIMVNVRPF---------------------MKGAL--DKLHRPEGRYTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIW---GPKVR 1267
            G+AAS  P V   +++    G   VLS        FI++N RP+                       GA   D L RP     AP++S ++EL + D  T  +     GH AFTTK+ PFLI   + +     D++ SG E+HRV++WH RH  L+  L GH + VN+VSWN +  G+++S SDD   IIW   G K R
Sbjct:  117 GEAASALPAVYDVKVKVYSMGERVVLSAKWNEAGDFILLNTRPYAHAVSGSQKTGGQSEASQASLQAGASFEDLLLRP-----APDLSTKMELLLLDARTLDVVSVFDGHFAFTTKESPFLIFTEEWSDS---DFLASGGEDHRVYIWHRRHGRLIRRLCGHAEPVNAVSWNGR--GLLASASDDNGIIIWAAAGAKER 305
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A0G4GZR2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZR2_VITBC)

HSP 1 Score: 103 bits (258), Expect = 1.220e-18
Identity = 74/263 (28.14%), Postives = 108/263 (41.06%), Query Frame = 2 
Query:  788 RRMEAVECGGAVLSVSVTRDDRFIMVNVRPFMKGA------LDKLHRPEGRYTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLI------------------------------------------------------------------------MAAQSAADPFG------------DYVCSGSEEHRVFVWHLRHRLLLGVL-KGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPK------VR*GMSSL 1285
            R +  ++    VL++ VT+D +F++VN RPF          LD+L     R   P++ + +E+ ++ + T      L GH AFTTK CPFLI                                                                           + A  P G            D+V SGSE+HRV+VWH+RH+ L+ +L  GH DVVNSVSWN   PG+++SC D+G   +W P+      +R G S+L
Sbjct: 1016 RPLVVIDARAGVLTLRVTQDGQFLLVNCRPFEGSQYLRLRLLDRLSAV--RQPKPDLKSAMEVHIYHIPTLTKVAVLKGHVAFTTKACPFLINLMEGGPGPDLPFPPIHHTRDTHDHPAXXXXXXXXXXXXXXXXXXXXXXXXXRDADAMMDQDEPSDGQEPSSSCVEGARRPAGVCGQQQPPWRCYDFVASGSEDHRVYVWHMRHQRLVSILANGHTDVVNSVSWNSGVPGLLASCGDEGHVCLWSPRRLKHHIIRHGASAL 1276
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A812H3E1_9DINO (Wdr26 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812H3E1_9DINO)

HSP 1 Score: 102 bits (253), Expect = 4.930e-18
Identity = 71/197 (36.04%), Postives = 99/197 (50.25%), Query Frame = 2 
Query:  752 GDAASLQPKVTARRMEAVECGG-AVLSVSVTRDDRFIMVNVRPFMKGAL---------DKLHRPE----GRYT--------APEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIW---GPKVR 1267
            G+A S  P V    ++    G   VLS        FI++N RP+   A          D  H  +    G  T        AP++S ++EL + D  T  +     GH AFTTK+ PFLI   + +     D++ SG E+HRV+VWH RH  L+  L GH + VN+VSWN +  G+++S SDD + IIW   G KVR
Sbjct: 1185 GEAGSALPAVYDVGVKVYSMGERVVLSAKWNEAGDFILLNTRPYAHAASGSNKNGGHGDASHTSQAPLQGSATFEDLLLRPAPDLSTKMELLLLDARTLDILSVFDGHFAFTTKESPFLIFTEEWSDS---DFLASGGEDHRVYVWHRRHGRLIRRLCGHAEPVNAVSWNGQ--GLLASASDDNSIIIWAAAGAKVR 1376
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A0B6ZSF1_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZSF1_9EUPU)

HSP 1 Score: 91.3 bits (225), Expect = 5.310e-18
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  962 VWDVATKKLAFKLGGH-HAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPK 1261
            +WD+  K L  K  G   AF      F I +     +   DYV SGSE+H+VF+WH R    + VL+GH   VN V WNPK P M++S SDDGTA IWGPK
Sbjct:    8 LWDLKDKVLLRKFHGQTQAF------FTIYSCFGGLNQ--DYVASGSEDHKVFIWHKRRETPVAVLEGHRQTVNCVHWNPKEPSMLASVSDDGTARIWGPK 100
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A813B4T2_SYMMI (Wdr26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B4T2_SYMMI)

HSP 1 Score: 100 bits (250), Expect = 9.390e-18
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2 
Query:  752 GDAASLQPKVTARRMEAVECGG-AVLSVSVTRDDRFIMVNVRPF---------------------MKGAL--DKLHRPEGRYTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIW---GPKVR 1267
            G+AAS  P V   +++    G   VLS        FI++N RP+                       GA   D L RP     AP++S ++EL + D  T  +     GH AFTTK+ PFLI   + +     D++ SG E+HRV++WH RH  L+  L GH + VN+VSWN +  G+++S SDD   IIW   G K R
Sbjct:  830 GEAASALPAVYDVKVKVYSMGERVVLSAKWNEAGDFILLNTRPYAHAVSGSQKTGGQGEASQASLQAGASFEDLLLRP-----APDLSTKMELLLLDARTLDVVSVFDGHFAFTTKESPFLIFTEEWSDS---DFLASGGEDHRVYIWHRRHGRLIRRLCGHAEPVNAVSWNGR--GLLASASDDNGIIIWAAAGAKER 1018
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A813CRT9_9DINO (Wdr26 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CRT9_9DINO)

HSP 1 Score: 100 bits (250), Expect = 1.020e-17
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2 
Query:  752 GDAASLQPKVTARRMEAVECGG-AVLSVSVTRDDRFIMVNVRPF---------------------MKGAL--DKLHRPEGRYTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIW---GPKVR 1267
            G+AAS  P V   +++    G   VLS        FI++N RP+                       GA   D L RP     AP++S ++EL + D  T  +     GH AFTTK+ PFLI   + +     D++ SG E+HRV++WH RH  L+  L GH + VN+VSWN +  G+++S SDD   IIW   G K R
Sbjct:  976 GEAASALPAVYDVKVKVYSMGERVVLSAKWNEAGDFILLNTRPYAHAVSGSQKTGGQGEASQASLQAGASFEDLLLRP-----APDLSTKMELLLLDARTLDVVSVFDGHFAFTTKESPFLIFTEEWSDS---DFLASGGEDHRVYIWHRRHGRLIRRLCGHAEPVNAVSWNGR--GLLASASDDNGIIIWAAAGAKER 1164
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A813IYS7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IYS7_POLGL)

HSP 1 Score: 95.1 bits (235), Expect = 1.050e-17
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 2 
Query:  929 APEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIW 1252
            AP++S  +EL + D  +  +     GH AFTTK+ PFLI   + A     D++ SG E+HRV+VWH RHR L+  L GH + VN+VSWN    G+++S SDD   IIW
Sbjct:  156 APDLSTTMELLLLDANSLDIIGLFDGHFAFTTKESPFLIFTDEWANS---DFLASGGEDHRVYVWHRRHRRLIRRLCGHTEPVNAVSWNGN--GLLASASDDKQIIIW 258
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BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Match: A0A7S1KJU7_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1KJU7_9ALVE)

HSP 1 Score: 87.8 bits (216), Expect = 2.440e-16
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 2 
Query: 1079 DYVCSGSEEHRVFVWHLRHRLLLGVL-KGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPK------VR*GMSSL 1285
            D+V SGSE+HRV+VWH+RH+ L+ +L  GH DVVNSVSWN   PG+++SC D+G   +W P+      +R G S+L
Sbjct:   65 DFVASGSEDHRVYVWHMRHQRLVSILANGHTDVVNSVSWNSGVPGLLASCGDEGHVCLWSPRRLKHHIIRHGASAL 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig864.20082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK18_9PHAE4.820e-23489.57F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5J6_ECTSI4.650e-19882.52F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A812MSZ5_9DINO3.130e-1935.68WDR26 protein (Fragment) n=1 Tax=Symbiodinium necr... [more]
A0A0G4GZR2_VITBC1.220e-1828.14Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A812H3E1_9DINO4.930e-1836.04Wdr26 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A0B6ZSF1_9EUPU5.310e-1847.52Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A813B4T2_SYMMI9.390e-1835.68Wdr26 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A813CRT9_9DINO1.020e-1735.68Wdr26 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A813IYS7_POLGL1.050e-1745.37Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1KJU7_9ALVE2.440e-1651.32Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig864contigEcto-sp13_S_contig864:1092..8329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score592.4
Seed ortholog evalue1.6e-166
Seed eggNOG ortholog2880.D7G5J6
Model size3595
KEGG koko:K10263,ko:K22382
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG0293@1,KOG0293@2759
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-22_000900.2
Cds size1233
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig864.20082.1prot_Ecto-sp13_S_contig864.20082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig864 1129..6004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.6410112-UTR-Ecto-sp13_S_contig864:1091..11281681464136.6410112-UTR-Ecto-sp13_S_contig864:1091..1128Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig864 1092..1128 +
1681464136.7172136-UTR-Ecto-sp13_S_contig864:6004..83291681464136.7172136-UTR-Ecto-sp13_S_contig864:6004..8329Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig864 6005..8329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.6613007-CDS-Ecto-sp13_S_contig864:1128..16141681464136.6613007-CDS-Ecto-sp13_S_contig864:1128..1614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig864 1129..1614 +
1681464136.672371-CDS-Ecto-sp13_S_contig864:2574..29341681464136.672371-CDS-Ecto-sp13_S_contig864:2574..2934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig864 2575..2934 +
1681464136.6847656-CDS-Ecto-sp13_S_contig864:3541..36191681464136.6847656-CDS-Ecto-sp13_S_contig864:3541..3619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig864 3542..3619 +
1681464136.6938844-CDS-Ecto-sp13_S_contig864:4706..49041681464136.6938844-CDS-Ecto-sp13_S_contig864:4706..4904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig864 4707..4904 +
1681464136.705829-CDS-Ecto-sp13_S_contig864:5893..60041681464136.705829-CDS-Ecto-sp13_S_contig864:5893..6004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig864 5894..6004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig864.20082.1

>prot_Ecto-sp13_S_contig864.20082.1 ID=prot_Ecto-sp13_S_contig864.20082.1|Name=mRNA_Ecto-sp13_S_contig864.20082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
MSVSPPEEGSAAPAGAAAAAAAAAAAATSSGSPCSPPPLEPVSRSRGGSS
NEGEEAMQPWGCLGGDSPPAPLIQFPFEPSAASGGGGHANGGEGGGLFDL
NVGAGIAPVEGGGGGGGGEDEEGGVEWVMQGGEVIAQVDNAEMPLVAEVR
LNLHRNFAHFFQMSNSGLWACVATGDTPMMCHRVAFIPLGEAKASPPKST
STRPAAMSPGDPGGSDDDDDTGDDEKDVFIHVLRSGSGGDAASLQPKVTA
RRMEAVECGGAVLSVSVTRDDRFIMVNVRPFMKGALDKLHRPEGRYTAPE
ISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYV
CSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDG
TAIIWGPKVR*
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mRNA from alignment at Ecto-sp13_S_contig864:1092..8329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig864.20082.1 ID=mRNA_Ecto-sp13_S_contig864.20082.1|Name=mRNA_Ecto-sp13_S_contig864.20082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7238bp|location=Sequence derived from alignment at Ecto-sp13_S_contig864:1092..8329+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGAGGGCCGCGCGAAGAGCTCCCCGCACACGACATGTCGGTTTCAC
CACCAGAAGAAGGATCTGCCGCTCCCGCTGGCGCTGCTGCTGCTGCTGCG
GCGGCGGCGGCGGCAGCCACCAGCTCTGGCTCACCGTGCAGCCCTCCGCC
TTTGGAACCGGTTTCCCGAAGCCGCGGCGGCAGCAGCAACGAAGGAGAAG
AAGCCATGCAACCCTGGGGTTGCCTGGGCGGCGACTCGCCCCCCGCTCCC
CTTATCCAGTTCCCTTTCGAACCCTCCGCCGCTAGCGGCGGAGGCGGCCA
CGCCAATGGCGGTGAGGGAGGTGGCCTGTTCGACTTAAATGTGGGGGCCG
GGATCGCGCCCGTTGAGGGCGGCGGCGGCGGCGGCGGTGGCGAGGACGAG
GAAGGGGGGGTGGAGTGGGTCATGCAAGGCGGGGAGGTGATCGCGCAAGT
CGACAACGCGGAGATGCCGCTGGTCGCCGAGGTTCGGCTCAACCTTCACA
GGAACTTCGCGCATTTTTTCCAGGTGAGAAGGAAACGGGCGCCGTGGGGG
GGGGGAGGGGGGGTACTCATAGTCGTGTATGCCGTAGTCGTTAGCCCATT
GACCTCGCATCCCTACAAAGCCGGGACGGAGCACTCCGGGTTCTGACCGG
ACAAGGCTCTCACGGGGGAGTGCCTTGCTTGGCACGGCGTGGTCACCTCT
GGCTCTATCTAAAACGTCGGCTTTCGTCCTTCTCCTTCAATAGTGAACTT
GAGTCTGGATAGCCTGTCCCTGTGGTCACCCAAACCACGGCTTCTCGTAA
AGCTCCTGCATGCTTAGCTGTGAACTACATACGTTGGTCGCGGTCGTCTA
CCCTCGGTGACTGTTCCGAGAAAGGAGAAACATGCAGCTAGGGCGCTCGG
CTATCCTGTCGGTACCCTACCCAAAATGATTCCATGTCGGATCCACAGGT
TTCCTTTTTCATGCCCACAACAGCAGGTGTGTGATAGATGTAGCCCCCCC
GTGGCGTTCAGCTTTCGCCGGAAACAAGTACGATGCGCGAAAAACATAGC
TTGCGGACGGCGTAGCTGGTAGCGGAGGGACTGTTCGCAGCGCGATGCGT
CAAGATTTCGCCGGATTGTCGTGGAGGTGATCCTCGTCCTCCCCTCACCT
CCCTTGAAAATCGAAAAGGCGTTTCGTTGCGTTGTCGCCCGCACCTCTTG
CGGAGAGCCCGCGAGTGTCTTCCGGAAACCCGCGACTTCTCCTGCAGAAA
ACCTGCAATTCTCGTACAGAAACCCGCGACTTCTCTTGCGGAAACCCGCA
AGTCTCTTACGCAAAACCCGCGAGTGTCTTGTTGCCGTTCCTCCGTCCCA
TGCCGGGCCACACGCGTTGTGTGCTTCCGTAGCGAGGTCGAGCGATGATG
CCCGGACCCTGAAGCATGTTTTTATCGATTCAAACACGCGAATCCCCCCC
CGATGGATTCTTGTCCGTCGACTCCGAATCTAGATGAGCAATTCCGGTTT
GTGGGCTTGCGTGGCCACCGGAGACACTCCCATGATGTGCCATCGGGTCG
CGTTTATCCCGCTGGGGGAGGCTAAGGCGTCGCCGCCGAAGTCGACGTCC
ACGAGGCCTGCTGCGATGTCGCCCGGTGATCCGGGTGGCTCGGATGATGA
TGATGACACCGGCGACGATGAGAAGGACGTGTTCATCCACGTTCTCCGGA
GCGGTAGTGGCGGTGATGCTGCCTCCCTTCAGCCCAAGGTCACGGCGAGG
CGGATGGAGGCAGTGGAGTGTGGGGGTGCCGTGCTGAGCGTGAGCGTCAC
CCGGGACGACCGCTTCATCATGGTTAACGTGCGACCGTTCATGGTACGAC
GCATGTAGATACTACGATTTGTTTTGAGCGATTCGTCGTGGTTAGTAGTG
CGACCGTTCATGGTACGACGTATGTAGATACCACGACGGTTTCAGCGATT
TATCATGGTTAGCGTGCGACCGTTCATTATAGGATTTATGTACACAACGA
TTTTGGCAGTGTCTGTGAGGGTGTGCCGTTGATTGTCCGCCTGGCGTGTT
TTGTCTCGATTAACTGAGCCTCCGAGTTTACCCCGGCCGAAAATTTTCGT
CGAACTGTTTTTTTGATGGCGCAGTGCTGTTGCGGCAAGAGACAGCTAAG
CATAGTGTTTAGCCCGCTGTCATTCCACTTATGTACGTAAGTGTGGTGTT
CGTAAGCCACACATTTTTGGCGTTTTTGTTGCGGTGCCCTTTGACGTCTC
CTCCCGCCACAGGTAGAGTTGTCGGCAGAGATAACTGTAGTTCGAGATAA
CACCACAGTCGAAGTGGATGTGTTGAAGTCGTTGCAGTGAGTGGTACGGA
GAAAAACTTGTTTGCCACGATAAATGTACATTTTGCAGCGTCGTTGTCAC
CCGCACCGGTATTGGCCCTCTGTTTTTGTTTTTGTTGTCGTTGCTTGCAG
AAAGGCGCCCTTGACAAGCTCCATCGCCCTGAAGGACGGTATACTGCTCC
GGAGATATCGAACGAAATCGAGCTGCAGGTGGGTTGGTCGAGGTGTAACC
GCCGCCGCGCGCGAGCCTCCGCTTCGTGGGCCTTCTCCCTGCCTACTGCA
TAGCAAACGCGTTGTGTTGTAGTTGTGAGCGGTGATCCTTTTGTCTCAGG
CAGCAGTTGGTGATGCTTGTGTGTCGAGCAGCCGTTTGCTATGTGTGGCC
TTCCCCCTGCCTGCTGCGCAGCAGACGCGTCCGCTTGCGGCAATGACACC
TGTGTCTTACGCAGCCATTGGCAATGAGGATTGATGCCTTTGTCTCGCTA
AGCGGTTTGCCTTTGGTTGGCCTCCTCGCTGCCTGCTGCACAGCACAAGC
GTTGCGTTGCAGTAGTGAGCGATAATCCCTGTGCCTTAGGCCGCCATTAG
TGATGCCTGTGTCTCACGCAGCTGTTTGCTTTGTTTGGCGTTTGCCCTGC
CTGCTGCACGGCAGAGGCGTCTCGTTGCAGTATCGAGCGATGATGCCCAT
GTCTCACGCAGCCGTTTGGTTTGTTTCCTTCTTTGGGGAGCACCGCTTTC
GCTATGGTTTCAACCCCCCGGGCGTATCCACGCTCGCGGCACGACTTGCT
CGAAGTGGTTTGGGTTTGGGTCAATCAACCCACATCGTGTATGCACGCCA
GGCGTGTGTCTTGTGATCACGTCCAGAAACCCAAATTTCGGAGGCTCTTC
GTTTTTGCTGGGAACGCTAAGTTTTTGTCGCGTTTCTGTATATTGGCGGA
CTGCTGTCCCCTGGTGCATCCCGAAAGTCGATCCCCCGCCCCCCCCCATC
AAGTCAAGTCAAATCAAGGCGGTCTAACGACTACGGCATGAACGGCTATG
AGTACACCCACCAGATAGGATAGACAGGCCAGGGGAAACATTTTCGAGCC
ACCTTTGGCAACGTAGGAAGGATCGATCGGCCATCTGTGATGAGTCCCGT
GGGAACAATGTCCCATCCTCTCGACGCGTGGACGCGTGGTCAGTGGTTTA
ACCGTTAAGGCATACACAACTTAAGAGCACCCCCCCCCCGCCTCCCCCCA
TCAAGTCACCAACCGAAGTGATCGCAGTGACGCCAACGCTCGAATTTTCG
GAACAAAAAAAAAAGGTTTGGGATGTCGCGACCAAGAAGCTCGCGTTCAA
GCTGGGCGGGCACCACGCGTTCACCACCAAGGATTGTCCTTTCCTCATCA
TGGCGGCGCAGAGCGCTGCAGATCCCTTCGGCGACTACGTCTGCAGCGGA
TCGGAGGAGCACCGGGTTTTCGTGTGGCACCTGCGACACCGCCTGCTCCT
CGGTGTGCTCAAGGTGACACCGCTAACATACAAATATGTGCATTCTACCG
CCGCAGTTTTCGACCGCACTACGACTGGCGTCTTTTCATTCGTCAGCCGG
TTAGGGCGGTCGATGCTAATAATAAAGACACATAATATTGTACACAGCCG
TGGAACGATCTTCAAAGCTCCGTTACTCCACGACCAAGGTGTGGTATGCA
TCAAGCGGGCCGTGCGTTTTGGGGAAGTTCTCGGCGAGACGGTGTTCCAG
CGCGCCGCCGTGTTCGGCACCGCCGCTGTTTCTGCTTTGGGTTTGTCGAG
CTGTTTGGAAATCGGTCCAAAATACGGTGTTCCAGCGTGCCGGCGTTTTC
GGCACGGCTGCTGTTTCTGCTGTAGGTTGATCGAGCCTTTTGGATTTCGG
TCCATGGCTAGCGGCTCGTGCGAACAGCAGCGTTACGCGTCTATCTCTTA
GATGCGGATGTTTGTTGCTCCACCTGTGTTGTGTGGCAAGTTTGGTTTTT
ACCCGCGAACGATCGCAAAGGCCTGTGCGTGTGTGGAAGGAGAAGGTTCG
CGCCCCCACGACAGGCACAGTTCATGGCACCAAGGAGGGAAAACCAGAGA
ATGAGAAAAAAATGATCCATGTTGTGTCAGCCAGTGAGTTGTACCGTTTC
GGCGTGAGTCGTACTCTTTTCTGTGTCGGATGGCAACGCCACCACCACGA
GTCGTCCATCTGCGCTTCTAGAGCTTGAGTGCATAAACAAGACGCTGCTG
CTTGGACAGGGTGCCCTTCGTTGCCAGCATCATGCAGTGTTCGGCTCGAT
CCTGTTTGGTTTAACGCTGGGCTTGGTTGATACCCGTTTCAAGCCGTCGC
GCGTCCCCCTCGCATTCCTAATTAGGATTCGCTCACTTGTTTTCCCTCTG
TCTCTTGCATCTATACGCTCACTTGTTTTCCCTTTGTTTTCTCCTTGTCT
CTTGCACCATCGATAAACAATGACGGTGATTGGCCAACTAACAACTCGAC
AGGGGCACGAGGACGTGGTGAATTCTGTGTCCTGGAACCCTAAGTACCCC
GGCATGATGTCCTCGTGCAGCGATGACGGCACGGCCATCATCTGGGGACC
TAAGGTTCGCTGAGGCATGTCTTCCCTAGTGTTTTCTTGCTTTTTTCCTG
TAATATTCTTGCTCCTGTTTTCGGTTGTCGGGCCATGTAAAGAGCTTGCT
GTTGTGGCCATATGTCAACGGGTCCACGCCAGTCATATGAGGACCTTTAG
TCCGGGTTTTGTGGCCGCATGCATGACAACAGGTCCACGTCCGTCATCTA
GGGACCCTAAGTCGGCGGTTTCTCTCTTGCAGTCCTAGCTCTGGGTTGGC
CTTCGTTGCTGCCTCAGGCCCACGGCGACACGGCCACCACCGCCTTAGCA
CTCAAAGTATGCTGAGGACTCCTCTCTGTCGTAGTCTTTGGCTCACAGGG
TCGAAATTTTGCTAGCCGCAAGCCCAGATGCTGCGAAAGTTCAACCCAAG
TCGTGCGCGTGGGCGGGTCGTGACGCAAATGCGGATACAGCAGAGCATTG
TCACGCAAGTGTCCAGACTTTGTCGGTCGGTCTCGGGTGATTCGGTGCAC
GCTTTGCTTGCACGTAGTTTAAGGAACCAGCTTGGGATGGGGCGCTCAGA
AACATGATGAATTCGGGGTTCGGTTGGGAGCTACGGTTAGTCCGGTGAAG
AGGGTGATTGACTGTTCATGATAAACTGACAATCCACGGCCCTCTCGGTA
TCCCTGGTCCTCTCATTCCTTGTGATAGTGTCGCCGTTCGCGTTTTGTAG
ATGCCTGGCAGCATGTTATGCCATCGTTGAGCAATACGACTTCTTAGTCG
ATGCTTGCACAACAGCAGTGCGCGCCGTTATTTACACCCCAGAAAGGGTG
TTACCCGCGCATGATTCGAGGTTCGCAGGGAGTAGTTGGTCAGAGCGTGC
TTCGATCTCGATTCTGCCATCAGAAACAATCGTTGTGGTACGTACGTGGA
ATGATAGAGGTTTGCGAATACGTGGGCACGCATGTTGTGTGGTTTTTGTC
CCATTCAAGTACGTGTAAGTTAGCGTCCCACTCAGGTAGGTGTAGCATTG
ACGCTTTGCTGCAAACAAGAGAGCTTTCGAGCATACCCTTTCGTTTTAGA
GGCGGATTAACGGGGCTCAAGTGTAGGTTATCTAAAACGTTTTGTCATCT
CACCAGGGGTGGCTAGTTGTGTGGCGGGCGAATACAAAAATACCTAGTAC
CATGCGGACGCAGCCCAAACAATCACGCAAGCCACGAGGAGGCGTGAAGA
GCGGGGATTAGATAATCCGCGGCCGATATTTGTTTGTATTTGCGACACTT
TTAAGAGGTGGTTGTGGGGGCCCGGCGGCTGGTACGTTGGCCGGTGACAT
TGCGGCAGCCCGAGCGCGAGCAGCATATGGGCGTGGAGGTTGTTCGTTTG
GGTAGAGCAACGTCGCGATCGATCCAGCCGGCTTCAAGACCTCGGGCTGA
TTGATGCCTGCAGCAGCATTGTTCTCTTCCCTCCTCCTCATCCATGCTGT
TAGCAGTTTCCTTTGCAAGTGGGCACACACACGGGAGGGATCGTGGTTTT
GTATGTGTTGAATTTGCGTCACGAGCTTAGCGGTTAGACCGTTGACCACG
CGTCCGCGAGAGGACGGGTGGGGCATCGTCCCCCACGGGTAAACATCGGC
ATGGTAGATATCTACGAGGGGACTCGTTATCGCTTTGGGGCACAATCTCG
TGTCGAGCCGAAAACTTAGTGTAGCCAGCGTGATGGATGCCCGTCGTTTC
GGTAGTTTGCTGTTTTTGGAAGGCGACGGAAACACTTCGGGCAGGGTACT
TGTGTCATGGCCTCCGACTATCTGCGGGCAGAGAAGTGGTCCGTATGGTC
GTTTGGTTATGATCTTCATCCGGAGAATCGCGGAGCTCTTGCCACTGGGG
AATACAGGACGTAACTCGACGAGATGCGGGGATGCGTAGCACCTGCCTCC
AAACTATTGCCGTTTTAGTAGGTCGTGATTAACCCCACAACGGGAAAGGT
GAAGAGACACAACTAAAAACGCGTGATTAACCCCACAATGGGGAAGGTTT
AGAGATACAGCTGAAACACGTGATTGTTACCGGTCTTGCTTGGGAGCTCT
CCCGGCTGGTGTTGTCACGTTTAGCCGTTAGAACAGAAATCCGTACGTCA
ATGTCGAGAGGACATCACGACACAAAAAAAATTAGTTGTTTTGCTTACCC
GAGGCAGAAATCCCAATTTGCAATCGGGAAATAATAACCCTCAGTTATCG
AGGGGATGGTGGGAGAGGGCGTTTAGACTTGCTATAAGTTTGTCTCGTAC
GGTTTTGTCGCCCAGCACTAAGCATGACATAAAGTCCAGCTTTTTTTTTG
GGGCGTGTCCTGCAGGGTGAAAAAACGAAAAGTCTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig864:1092..8329+

>mRNA_Ecto-sp13_S_contig864.20082.1 ID=mRNA_Ecto-sp13_S_contig864.20082.1|Name=mRNA_Ecto-sp13_S_contig864.20082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig864:1092..8329+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGTTTCACCACCAGAAGAAGGATCTGCCGCTCCCGCTGGCGCTGC
TGCTGCTGCTGCGGCGGCGGCGGCGGCAGCCACCAGCTCTGGCTCACCGT
GCAGCCCTCCGCCTTTGGAACCGGTTTCCCGAAGCCGCGGCGGCAGCAGC
AACGAAGGAGAAGAAGCCATGCAACCCTGGGGTTGCCTGGGCGGCGACTC
GCCCCCCGCTCCCCTTATCCAGTTCCCTTTCGAACCCTCCGCCGCTAGCG
GCGGAGGCGGCCACGCCAATGGCGGTGAGGGAGGTGGCCTGTTCGACTTA
AATGTGGGGGCCGGGATCGCGCCCGTTGAGGGCGGCGGCGGCGGCGGCGG
TGGCGAGGACGAGGAAGGGGGGGTGGAGTGGGTCATGCAAGGCGGGGAGG
TGATCGCGCAAGTCGACAACGCGGAGATGCCGCTGGTCGCCGAGGTTCGG
CTCAACCTTCACAGGAACTTCGCGCATTTTTTCCAGATGAGCAATTCCGG
TTTGTGGGCTTGCGTGGCCACCGGAGACACTCCCATGATGTGCCATCGGG
TCGCGTTTATCCCGCTGGGGGAGGCTAAGGCGTCGCCGCCGAAGTCGACG
TCCACGAGGCCTGCTGCGATGTCGCCCGGTGATCCGGGTGGCTCGGATGA
TGATGATGACACCGGCGACGATGAGAAGGACGTGTTCATCCACGTTCTCC
GGAGCGGTAGTGGCGGTGATGCTGCCTCCCTTCAGCCCAAGGTCACGGCG
AGGCGGATGGAGGCAGTGGAGTGTGGGGGTGCCGTGCTGAGCGTGAGCGT
CACCCGGGACGACCGCTTCATCATGGTTAACGTGCGACCGTTCATGAAAG
GCGCCCTTGACAAGCTCCATCGCCCTGAAGGACGGTATACTGCTCCGGAG
ATATCGAACGAAATCGAGCTGCAGGTTTGGGATGTCGCGACCAAGAAGCT
CGCGTTCAAGCTGGGCGGGCACCACGCGTTCACCACCAAGGATTGTCCTT
TCCTCATCATGGCGGCGCAGAGCGCTGCAGATCCCTTCGGCGACTACGTC
TGCAGCGGATCGGAGGAGCACCGGGTTTTCGTGTGGCACCTGCGACACCG
CCTGCTCCTCGGTGTGCTCAAGGGGCACGAGGACGTGGTGAATTCTGTGT
CCTGGAACCCTAAGTACCCCGGCATGATGTCCTCGTGCAGCGATGACGGC
ACGGCCATCATCTGGGGACCTAAGGTTCGCTGA
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