mRNA_Ecto-sp13_S_contig86250.20063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86250.20063.1
Unique NamemRNA_Ecto-sp13_S_contig86250.20063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86250.20063.1 vs. uniprot
Match: Q8QNI9_ESV1K (ESV-1-84 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNI9_ESV1K)

HSP 1 Score: 191 bits (485), Expect = 1.540e-56
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 1 
Query:    1 MYIKISNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFLTSTDFAWGGSSGWTPPDPVS 333
            MYIK+SNL+DIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIV EWKQMIAGFFLNKIF PFLSV+AVTKMF TSTDFAWG S+  TPPD  S
Sbjct:  384 MYIKLSNLVDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIVPEWKQMIAGFFLNKIFTPFLSVIAVTKMFFTSTDFAWG-STRLTPPDAAS 493
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BLAST of mRNA_Ecto-sp13_S_contig86250.20063.1 vs. uniprot
Match: D8LPB5_ECTSI (Chitin synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB5_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 4.730e-56
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 MYIKISNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFLTSTDFAWGGSSGWTPP 321
            +YIK+SNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFS+FIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMF T+TDFAWG SS  TPP
Sbjct:  384 VYIKLSNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSMFIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFFTATDFAWG-SSRLTPP 489
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86250.20063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNI9_ESV1K1.540e-5689.19ESV-1-84 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPB5_ECTSI4.730e-5692.52Chitin synthase n=1 Tax=Ectocarpus siliculosus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86250contigEcto-sp13_S_contig86250:3..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score191.0
Seed ortholog evalue3e-46
Seed eggNOG ortholog2880.D8LPB5
Model size342
KEGG rclassRC00005
KEGG koko:K00698
KEGG ReactionR02335
KEGG Pathwayko00520,map00520
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.chitin synthase activity
EggNOG OGsCOG1215@1,KOG2571@2759
Ec32 ortholog descriptionEsV-1-84 glycosyltransferase
Ec32 orthologEc-06_005970.1
EC2.4.1.16
Cds size342
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.372645-CDS-Ecto-sp13_S_contig86250:2..3441681464135.372645-CDS-Ecto-sp13_S_contig86250:2..344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86250 3..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86250.20063.1prot_Ecto-sp13_S_contig86250.20063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86250 3..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86250.20063.1

>prot_Ecto-sp13_S_contig86250.20063.1 ID=prot_Ecto-sp13_S_contig86250.20063.1|Name=mRNA_Ecto-sp13_S_contig86250.20063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MYIKISNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPY
LYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFLTSTDFAWGG
SSGWTPPDPVSST*
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mRNA from alignment at Ecto-sp13_S_contig86250:3..344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86250.20063.1 ID=mRNA_Ecto-sp13_S_contig86250.20063.1|Name=mRNA_Ecto-sp13_S_contig86250.20063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86250:3..344+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATATCAAGATATCGAACCTTATCGACATCGCCCGAGTCTTCACCAC
CATCTTCCGCGTGATATCATATTTGTGCTTCTGGGTTTACGTCAAGAATT
TTTCCCTTGTGAACATCGTGTTTTTCTCAATATTTATTGCCCTTCCCTAT
CTCTATGCCTTCGCCTGGATATTCTGTATCGTCTCGGAGTGGAAGCAGAT
GATAGCTGGGTTTTTTTTAAACAAAATCTTCATGCCTTTCTTATCTGTGG
TCGCGGTGACCAAGATGTTCCTCACGTCGACCGATTTTGCTTGGGGCGGT
AGTAGCGGATGGACACCACCCGATCCAGTGTCGTCAACTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86250:3..344+

>mRNA_Ecto-sp13_S_contig86250.20063.1 ID=mRNA_Ecto-sp13_S_contig86250.20063.1|Name=mRNA_Ecto-sp13_S_contig86250.20063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86250:3..344+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATATCAAGATATCGAACCTTATCGACATCGCCCGAGTCTTCACCAC
CATCTTCCGCGTGATATCATATTTGTGCTTCTGGGTTTACGTCAAGAATT
TTTCCCTTGTGAACATCGTGTTTTTCTCAATATTTATTGCCCTTCCCTAT
CTCTATGCCTTCGCCTGGATATTCTGTATCGTCTCGGAGTGGAAGCAGAT
GATAGCTGGGTTTTTTTTAAACAAAATCTTCATGCCTTTCTTATCTGTGG
TCGCGGTGACCAAGATGTTCCTCACGTCGACCGATTTTGCTTGGGGCGGT
AGTAGCGGATGGACACCACCCGATCCAGTGTCGTCAACTTAA
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