prot_Ecto-sp13_S_contig86250.20063.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86250.20063.1
Unique Nameprot_Ecto-sp13_S_contig86250.20063.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length114
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86250.20063.1 vs. uniprot
Match: Q8QNI9_ESV1K (ESV-1-84 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNI9_ESV1K)

HSP 1 Score: 191 bits (485), Expect = 1.540e-56
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0 
Query:    1 MYIKISNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFLTSTDFAWGGSSGWTPPDPVS 111
            MYIK+SNL+DIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIV EWKQMIAGFFLNKIF PFLSV+AVTKMF TSTDFAWG S+  TPPD  S
Sbjct:  384 MYIKLSNLVDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIVPEWKQMIAGFFLNKIFTPFLSVIAVTKMFFTSTDFAWG-STRLTPPDAAS 493
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BLAST of mRNA_Ecto-sp13_S_contig86250.20063.1 vs. uniprot
Match: D8LPB5_ECTSI (Chitin synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB5_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 4.730e-56
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0 
Query:    1 MYIKISNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFLTSTDFAWGGSSGWTPP 107
            +YIK+SNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFS+FIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMF T+TDFAWG SS  TPP
Sbjct:  384 VYIKLSNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSMFIALPYLYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFFTATDFAWG-SSRLTPP 489
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86250.20063.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNI9_ESV1K1.540e-5689.19ESV-1-84 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPB5_ECTSI4.730e-5692.52Chitin synthase n=1 Tax=Ectocarpus siliculosus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..91
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 12..31
NoneNo IPR availableTMHMMTMhelixcoord: 36..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86250contigEcto-sp13_S_contig86250:3..344 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86250.20063.1mRNA_Ecto-sp13_S_contig86250.20063.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86250 3..344 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86250.20063.1 ID=prot_Ecto-sp13_S_contig86250.20063.1|Name=mRNA_Ecto-sp13_S_contig86250.20063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MYIKISNLIDIARVFTTIFRVISYLCFWVYVKNFSLVNIVFFSIFIALPY
LYAFAWIFCIVSEWKQMIAGFFLNKIFMPFLSVVAVTKMFLTSTDFAWGG
SSGWTPPDPVSST*
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