mRNA_Ecto-sp13_S_contig86104.20044.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86104.20044.1
Unique NamemRNA_Ecto-sp13_S_contig86104.20044.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86104.20044.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.700e-13
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 LRVELWDWDRGSCDESLGSVEVSIDKQLRSQKV 99
            LRVELWDWDRGSCDESLGSVEVSIDK+LRSQK 
Sbjct:  145 LRVELWDWDRGSCDESLGSVEVSIDKELRSQKT 177
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BLAST of mRNA_Ecto-sp13_S_contig86104.20044.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-12
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 LRVELWDWDRGSCDESLGSVEVSIDKQLRSQKV 99
            LRVELWDWDRGSCD+SLGSVEVSIDK+LRSQK+
Sbjct:  145 LRVELWDWDRGSCDDSLGSVEVSIDKELRSQKL 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86104.20044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW30_9PHAE6.700e-1393.94C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G4V0_ECTSI1.240e-1290.91Protein kinase C, beta 1, like n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86104contigEcto-sp13_S_contig86104:405..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score69.3
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog2880.D7G4V0
Model size174
KEGG koko:K04868,ko:K15712,ko:K19728
KEGG TC8.A.16.2.2
KEGG Pathwayko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Protein kinase c
EggNOG OGsKOG0696@1,KOG0696@2759
EC2.3.2.27
Cds size174
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04040,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.0025089-CDS-Ecto-sp13_S_contig86104:404..5781681464134.0025089-CDS-Ecto-sp13_S_contig86104:404..578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86104 405..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86104.20044.1prot_Ecto-sp13_S_contig86104.20044.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86104 405..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86104.20044.1

>prot_Ecto-sp13_S_contig86104.20044.1 ID=prot_Ecto-sp13_S_contig86104.20044.1|Name=mRNA_Ecto-sp13_S_contig86104.20044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
LRVELWDWDRGSCDESLGSVEVSIDKQLRSQKVGRCDTHVTSARGTAGSS
QPGGWPS*
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mRNA from alignment at Ecto-sp13_S_contig86104:405..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86104.20044.1 ID=mRNA_Ecto-sp13_S_contig86104.20044.1|Name=mRNA_Ecto-sp13_S_contig86104.20044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86104:405..578- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCGTAGAGCTTTGGGACTGGGACCGCGGTTCATGTGATGAGTCGTT
GGGCAGCGTCGAGGTCAGCATCGACAAGCAACTCCGGTCACAGAAGGTAG
GCAGATGCGATACACATGTTACATCAGCAAGGGGCACCGCAGGTTCTTCA
CAACCTGGCGGATGGCCCTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86104:405..578-

>mRNA_Ecto-sp13_S_contig86104.20044.1 ID=mRNA_Ecto-sp13_S_contig86104.20044.1|Name=mRNA_Ecto-sp13_S_contig86104.20044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86104:405..578- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCGTAGAGCTTTGGGACTGGGACCGCGGTTCATGTGATGAGTCGTT
GGGCAGCGTCGAGGTCAGCATCGACAAGCAACTCCGGTCACAGAAGGTAG
GCAGATGCGATACACATGTTACATCAGCAAGGGGCACCGCAGGTTCTTCA
CAACCTGGCGGATGGCCCTCGTGA
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