prot_Ecto-sp13_S_contig86104.20044.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86104.20044.1
Unique Nameprot_Ecto-sp13_S_contig86104.20044.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length58
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86104.20044.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.700e-13
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 
Query:    1 LRVELWDWDRGSCDESLGSVEVSIDKQLRSQKV 33
            LRVELWDWDRGSCDESLGSVEVSIDK+LRSQK 
Sbjct:  145 LRVELWDWDRGSCDESLGSVEVSIDKELRSQKT 177
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BLAST of mRNA_Ecto-sp13_S_contig86104.20044.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-12
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0 
Query:    1 LRVELWDWDRGSCDESLGSVEVSIDKQLRSQKV 33
            LRVELWDWDRGSCD+SLGSVEVSIDK+LRSQK+
Sbjct:  145 LRVELWDWDRGSCDDSLGSVEVSIDKELRSQKL 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86104.20044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW30_9PHAE6.700e-1393.94C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G4V0_ECTSI1.240e-1290.91Protein kinase C, beta 1, like n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86104contigEcto-sp13_S_contig86104:405..578 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86104.20044.1mRNA_Ecto-sp13_S_contig86104.20044.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86104 405..578 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86104.20044.1 ID=prot_Ecto-sp13_S_contig86104.20044.1|Name=mRNA_Ecto-sp13_S_contig86104.20044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
LRVELWDWDRGSCDESLGSVEVSIDKQLRSQKVGRCDTHVTSARGTAGSS
QPGGWPS*
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