mRNA_Ecto-sp13_S_contig8608.20035.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8608.20035.1
Unique NamemRNA_Ecto-sp13_S_contig8608.20035.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: D7FMD4_ECTSI (Similar to TPR, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD4_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 7.880e-146
Identity = 239/241 (99.17%), Postives = 239/241 (99.17%), Query Frame = 1 
Query:    4 MRLMQMERELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXGRPVERNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGARHAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ 726
            MRLMQMERELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXGRPVERNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKD K AKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGARHAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ
Sbjct:   24 MRLMQMERELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXGRPVERNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDTKAAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGARHAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ 264
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 5.410e-90
Identity = 195/310 (62.90%), Postives = 195/310 (62.90%), Query Frame = 1 
Query:  118 MSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELE------------------DXXXXXXGRPVERNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGAR-----------------------------------------------------------------------------------------HAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ 726
            MSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELE                  D      GRPVERNGG GDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLV VTGAR                                                                                         HAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ
Sbjct:    1 MSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEVTKDSLADLGAQVQKLLKDKLERDLGRPVERNGGAGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVAVTGARDTYRLALAQEAMKNGXXXXXXXXXXXXXAQELEAMKSRVHELERDLGVSRDESRKLQESLRLMGEEVTTAERARSKATADFVSAQRLLSHAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ 310
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A7R9U495_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U495_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.770e-11
Identity = 53/195 (27.18%), Postives = 109/195 (55.90%), Query Frame = 1 
Query:   25 RELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRI-------ERELEDXXXXXXGRPVERNGGGGDGGVSKGGNVVP---------QDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELK 561
            RE +  +++++R ++YL+RIL+++++K+P+L + K++YQRVLQS+  L  + E + +  ++   E   AA   DR+       ++E++D          +  GGG          V+P         ++ ++ IS+HLV F  + ELQ++N  L++VVR+++  +++  T    E R  +   +++  ++L+EL+
Sbjct:  358 RECDQYKAEKERLEIYLSRILKDIEEKAPVLAAQKREYQRVLQSYGHLTTRYEEACKELEEVRSEAMAAADETDRLREENGALQQEVQDVSAQLRAMLQKEMGGGA--------AVIPDTTPATDFVRNSEETISEHLVRFSSVEELQKKNAQLLRVVRKLSRRVEEEDTLALSESRIEHQAALKQALKRLEELR 544
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A7S1UHX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHX5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.760e-11
Identity = 53/184 (28.80%), Postives = 106/184 (57.61%), Query Frame = 1 
Query:   49 DRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQK-------AEMEREVAARGRDRIERELEDXXXXXXGRPVERNGGGGDGGVSKGGN---VVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESR 570
            +++R ++YL RIL+++++K+P+L + K++YQRVLQS+  L  + E + R  ++        E +R+  A   + +++E++D       R + +   G D  V    N      ++ D+ I++HLV F+ + ELQ++N  L++VVR+++   ++  T    E R  +   +++  +QL+ELK +R
Sbjct:    1 EKERLEMYLGRILKDIEEKAPVLAAQKREYQRVLQSYGHLSTRYEEACRELEELRGDAAGGEDDRKRLADENEALQQEIQDVSSQL--RSMLQKEAGTDAAVIPDTNPATATARNSDEAITEHLVNFRSVEELQKKNAQLLRVVRKLSRRAEEEDTMALNETRVEHQAALKQALKQLEELKGAR 182
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A7S3CEI5_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CEI5_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 1.760e-10
Identity = 70/225 (31.11%), Postives = 117/225 (52.00%), Query Frame = 1 
Query:   43 RSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRR-------CQKAEMEREVAARGRDRIERELEDXXXXXX-----------GRPV--ERNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQM--TAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGARHAEDQVKTLMADR 651
            RSD+ R Q YL  IL E+++K+PL+   K++Y+RV++SH+ L  ++E +M           KA  + + AAR +  +E++ ED                 GR +   R  G G G  S  G VV      VI+DHLV F+ I ELQ++N+ L+ V RQ+    E K +   K +E+   ++K +  +E + ++L +  K+ + ++  V   R   D  K L+++R
Sbjct:  394 RSDKKRVQGYLDTILEELERKAPLINEQKQEYERVMRSHDALAKRLEDAMHERAALDATIGKARSDAQRAAREKRSVEQQAEDLSRQVQVLLKEVEDLKSGRALVGSRGNGAGAGQTSSNGGVVR--ASDVINDHLVEFKSIEELQQKNKQLLAVARQLGDDNEQKVSDVRKSLEEE--HAKQIAAVELRAEKLSQQHKQHEGLMQQVLRQR---DLYKQLLSER 611
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: UPI00106C6780 (nucleoprotein TPR-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C6780)

HSP 1 Score: 70.1 bits (170), Expect = 4.450e-10
Identity = 71/227 (31.28%), Postives = 118/227 (51.98%), Query Frame = 1 
Query:   31 LEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXG---------RPVERNGGGGDGGVSKGGNVVPQDL----------DQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELK--DAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGARHAEDQVKTLMAD 648
            LE  +++  R + YL  IL+++++K+PLL   +KDY+  L + ++L LK+E +M+  +K  ME   A +  + + RE E                 +  E   G     VS   ++V  DL           +VIS  LVTF++I ELQE+N+ L+ VVR+++ E +  + K   D+    L  K+ + +  +L+ELKESR+RQ  M+  V   R   D  + L+A+
Sbjct:  427 LEIEKAENGRLKGYLEDILKDIEEKAPLLQQQRKDYEGSLITIDKLTLKLEDAMKEMEKYSMETSEAVQKSEHLRRENERMKVLTADLASQVKVLLKECEEARGSV---VSTTSSIVLDDLAHSHDEVSSSSEVISSRLVTFRNIEELQEQNQRLLTVVRELSEEKEKDEQKEKSDLAHTELKQKLDEALN-ELEELKESRERQTSMVEAVVRQR---DMYRVLLAN 646
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A2C9LYU0_BIOGL (Nucleoprotein TPR n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LYU0_BIOGL)

HSP 1 Score: 68.9 bits (167), Expect = 1.050e-9
Identity = 64/207 (30.92%), Postives = 114/207 (55.07%), Query Frame = 1 
Query:   43 RSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXGRPVERNGGGGDGGVSKGGNVVPQDLD----------QVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLD-------ELKESRKRQDEMLVTVTGAR 612
            R +  R   YL +IL+E+++K+PLL   ++DY+  L + +QL  +++++M  C+K   + +   R    I+RE   XXXXXX           +    KGG VV  +LD           +IS+ LVTF+ I ELQ++N+ L++V R+++ +       K++E+  + S+  +E++ QLD       +LK++R RQ E++ ++   R
Sbjct:  257 REENKRLNSYLEQILQEIEEKAPLLKKQREDYETTLNNLDQLTSQLDSAMLECEKLRADADDMRRRYGHIQREXXXXXXXXXXXXXXXXXLLKEVEELKGGRVVRDELDVSSSEVSSSSNIISEKLVTFRSIEELQQQNQRLIEVCRELSEK-------KELEENEMTSEKTKELKEQLDFALSELEQLKDARARQTELVESIVRQR 456
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A6P4ZV58_BRABE (Nucleoprotein TPR n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZV58_BRABE)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-9
Identity = 69/230 (30.00%), Postives = 116/230 (50.43%), Query Frame = 1 
Query:   28 ELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXG---------RPVERNGGG----GDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMTAELKDAKTAKDVEQRSLNSKVVQEMERQLD-------ELKESRKRQDEMLVTVTGARHAEDQVKTLMADRAS 657
            +LE  + +  R + YL +IL E++QK+P+L   ++DY+R LQ+  +L  K++ +   C++   E + + R    + RE E                 + VE   GG    G+  VS   +V      QVIS  LVTF+ I ELQERN  L+ ++R+M+AE + A       ++      +QE+ERQL+        L+E+R +Q  M+ ++   R   D  + L+A + +
Sbjct:  400 QLELEKMESTRMKGYLDQILEEIEQKAPVLQRQREDYERSLQTINKLSQKLDTTALECEQLRAEVDDSRRRTSHLTRENERLSTRAVDLSQQVRVLLKEVEEARGGHVASGEAEVSSSADVATSS--QVISQKLVTFRSIEELQERNEQLLTLMREMSAEHERA-------EKETTDTRIQELERQLEMSLQDVEALREARDKQQTMVESLVQQR---DMYRVLLAQQTA 617
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A5B8MVV5_9CHLO (Nucleoprotein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVV5_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.940e-9
Identity = 68/222 (30.63%), Postives = 123/222 (55.41%), Query Frame = 1 
Query:   43 RSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRR-------CQKAEMEREVAARGRDRIERELEDXXXXXXG--RPVE--RNG----GGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQM--TAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVTGARHAEDQVKTLMADRAS 657
            R+D+ + Q YL  IL E+++K+PL+   K +Y+R++ SH+ L  ++E ++           KA  + + AAR +  IE++ ED         + VE  ++G    GG     S    VV      VI+DHLV F+ I+ELQE+N+ L+ V RQ+    E K +   K++E+   ++K +Q+++ Q+D+L   R++Q++++  +   R   D  K+L+ ++ S
Sbjct:  409 RNDKKKIQGYLDTILEELERKAPLINEQKAEYERLMNSHDALAKRLEDAINERATLESTMSKARSDVQRAAREKKAIEQQAEDLSRQVQVLLKEVEDMKSGRALMGGASQTTSSANGVVG--ASDVITDHLVEFKSIKELQEQNKRLLAVARQLGDDNEQKVSDVRKNLEEE--HTKQMQDVKSQVDKLSSQREQQEKLMQQILRQR---DLYKSLLMEKES 623
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BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Match: A0A662YA30_9STRA (TPR_MLP1_2 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YA30_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.570e-9
Identity = 47/162 (29.01%), Postives = 88/162 (54.32%), Query Frame = 1 
Query:   10 LMQMERELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQSHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDXXXXXXG-----------RPVERNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVRQMT 462
            ++++E  L+  R+D+D+ QLY+ RI++EV +K+P+LM  + D++R + SH Q+  ++E  M+   K++ + + A + +   E++ E                    P +R    G G  + G          V S++LV F+D+ ELQ RN+ L+ V+R++T
Sbjct:  371 IVELEEALQSERNDKDKLQLYMDRIVKEVQEKAPILMGLRLDHERAVASHTQMSERLEQCMQELSKSKSKEQQAWKDKHAFEKKCESLAQSVDDLSRQVQHLLFRSPEQRQQASGSGHFAPG---------VVASENLVVFKDVEELQVRNQQLLTVIRELT 523
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8608.20035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMD4_ECTSI7.880e-14699.17Similar to TPR, partial n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRL3_9PHAE5.410e-9062.90TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A7R9U495_9STRA6.770e-1127.18Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1UHX5_9STRA8.760e-1128.80Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3CEI5_9CHLO1.760e-1031.11Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
UPI00106C67804.450e-1031.28nucleoprotein TPR-like isoform X1 n=3 Tax=Dendrone... [more]
A0A2C9LYU0_BIOGL1.050e-930.92Nucleoprotein TPR n=1 Tax=Biomphalaria glabrata Ta... [more]
A0A6P4ZV58_BRABE1.090e-930.00Nucleoprotein TPR n=3 Tax=Branchiostoma TaxID=7737... [more]
A0A5B8MVV5_9CHLO1.940e-930.63Nucleoprotein n=2 Tax=Chloropicon primus TaxID=176... [more]
A0A662YA30_9STRA3.570e-929.01TPR_MLP1_2 domain-containing protein n=2 Tax=Notho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8608contigEcto-sp13_S_contig8608:164..6203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score64.7
Seed ortholog evalue6.8e-08
Seed eggNOG ortholog4787.PITG_22839T0
Model size726
KEGG koko:K09291,ko:K10405,ko:K12472,ko:K20283
KEGG TC1.I.1
KEGG Pathwayko03013,ko04144,ko05200,ko05216,map03013,map04144,map05200,map05216
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000278,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009506,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009908,GO:0009909,GO:0009910,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019222,GO:0022402,GO:0022414,GO:0030054,GO:0030071,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031503,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033233,GO:0033234,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046907,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051641,GO:0051649,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071173,GO:0071174,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090567,GO:0099402,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903320,GO:1903321,GO:1905818,GO:1905819,GO:2000026,GO:2000241,GO:2000242,GO:2000816,GO:2001251
Exons6
EggNOG free text desc.TPR/MLP1/MLP2-like protein
EggNOG OGs3Q9SY@4776,KOG4674@1,KOG4674@2759
Cds size723
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8608.20035.1prot_Ecto-sp13_S_contig8608.20035.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8608 167..6203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.3407247-UTR-Ecto-sp13_S_contig8608:163..1661681464133.3407247-UTR-Ecto-sp13_S_contig8608:163..166Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8608 164..166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.3616161-CDS-Ecto-sp13_S_contig8608:166..2681681464133.3616161-CDS-Ecto-sp13_S_contig8608:166..268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8608 167..268 +
1681464133.3735306-CDS-Ecto-sp13_S_contig8608:584..7461681464133.3735306-CDS-Ecto-sp13_S_contig8608:584..746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8608 585..746 +
1681464133.3833685-CDS-Ecto-sp13_S_contig8608:1201..13061681464133.3833685-CDS-Ecto-sp13_S_contig8608:1201..1306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8608 1202..1306 +
1681464133.3965347-CDS-Ecto-sp13_S_contig8608:1669..17411681464133.3965347-CDS-Ecto-sp13_S_contig8608:1669..1741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8608 1670..1741 +
1681464133.405546-CDS-Ecto-sp13_S_contig8608:3014..31811681464133.405546-CDS-Ecto-sp13_S_contig8608:3014..3181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8608 3015..3181 +
1681464133.4145799-CDS-Ecto-sp13_S_contig8608:6088..62031681464133.4145799-CDS-Ecto-sp13_S_contig8608:6088..6203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8608 6089..6203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8608.20035.1

>prot_Ecto-sp13_S_contig8608.20035.1 ID=prot_Ecto-sp13_S_contig8608.20035.1|Name=mRNA_Ecto-sp13_S_contig8608.20035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
MRLMQMERELEYVRSDRDRNQLYLTRILREVDQKSPLLMSNKKDYQRVLQ
SHEQLFLKVEASMRRCQKAEMEREVAARGRDRIERELEDKLERDLGRPVE
RNGGGGDGGVSKGGNVVPQDLDQVISDHLVTFQDIRELQERNRSLVQVVR
QMTAELKDAKTAKDVEQRSLNSKVVQEMERQLDELKESRKRQDEMLVTVT
GARHAEDQVKTLMADRASRTKQLDVASDKFMRLSGNVVRLQ
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mRNA from alignment at Ecto-sp13_S_contig8608:164..6203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8608.20035.1 ID=mRNA_Ecto-sp13_S_contig8608.20035.1|Name=mRNA_Ecto-sp13_S_contig8608.20035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6040bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8608:164..6203+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGCGACTGATGCAGATGGAGAGGGAGCTGGAGTACGTCCGCAGCGA
CCGGGACCGTAACCAGCTGTACCTCACCAGGATCTTGAGAGAGGTCGATC
AGAAGGTGGGGGGCAGCAATTTTTTCACGACAACGGCTGATGCGTTCTTG
TTGCTGTTGGTAGGTGTAAGCTGTTGTCTAGTTGTCGGTGTTGTTGATTG
TTTTTTTTTGTTGAGAAGGTGGGGCACGACATGCTTTGTTTTCAGGTATT
TGTCTGCTGCTGTTTACTTGCGTTGATGCGTTTTTCGATGCATTCGTTTT
TCGATGCATTAGAGCCCTTGACCAAACTGAACCAAGAACGCGAAACAAAT
GGGCAGTGCTTTCATTTCACTCTTCAAATCCGCATGTTCCCTCGTGTTGA
ACGAAAAATTCTCTCAAACAGAGCCCCCTCCTGATGAGCAACAAAAAGGA
CTACCAGCGAGTGCTGCAGTCCCACGAGCAGCTCTTCCTCAAGGTGGAGG
CAAGCATGCGCCGCTGCCAGAAGGCCGAGATGGAGAGGGAGGTGGCCGCG
AGGGGCAGGGACCGCATCGAGCGGGAGCTGGAGGTCACTAAGGAGTGAGT
CTTTGGTTGCTGTTGCTGCTGTTGCTGCTGCTGTCGTTGCCTTGCTACTG
CTGCTGCCCTGTTGTGGAGCGGGCTCACTTATGCCCCCGGGGGTATCGGC
CAGCTGTTGTGGCCCCCACCTCGCGTGCTTTGCGGGGTTGTGGTTGACGG
TAGCATAGAGCTGATATTTGGCGGCCTGCGTGTGGCCTTGTGGTGCCATG
TAATCTTGAATTCGAGCTTTCACGCCCCGCCTACCCGTAGTAAAACCGTG
ATTCCTTTGCGTGATTTTTGTGCGTGTATTTTCTTGCTCCTTTTCTCTTT
ACGGGATAGATTTTTCTGCTCCCTCTTATCCCTCCTCCTCCTCCTCTCTC
TCTTTCTGTCCGTCGTATCCCCCGTTTCCCTTCTCTCCCCCGCAGCTCTC
TCGCGGACCTTGGCGCTCAAGTGCAGAAACTTCTTAAGGACAAGCTCGAG
CGGGATCTCGGCCGCCCCGTCGAGCGCAACGGCGGCGGCGGTGATGGTGG
GGTTTCCAAGGGAGGGAACGTCGTCCCGCAGGATCTCGATCAGGTCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTACTGTTGTTGTTGTTGTTGTTGT
TGTTACAAATCTAAGCACTTCTACAAGTAAACTACATAAATACAGTGGGG
GTCCCCGGATAAGGCGTTGGTGGGGGGTGGGGCAGCCTCCTTATTCAGTG
TGTAGAACAACTTGATTTATTCCTTCTATGCCAGCCGATTTCACCCCCGT
TATACGAGGTGACCGCCTTAGTCGGGGAGCCATCCCAACGAACACCGGTG
TGATTGTTGTTGTGTTTGTTGTAGGACAAGAAACGAAAGGAAGTAGCGAT
AGGTCAAGATTCTTTGAATAGACGAACGCCGGTGACTTTTCGCTACACGT
TTTCAGGTGATCTCCGACCACTTGGTGACATTCCAGGACATCCGGGAGCT
GCAAGAGCGCAACAGGTCCCTGGTGCAGGTGGGTGTGGGCCTTCTAGTGA
GACCCTTACTGATTGTGATGGAGTCATCCCCCCCAATCTATCGAGTAGGT
TAATAGCGAGACCGATTGTGATGAAGTTTCTTCCTGCCCCCCTCCCTGTC
GAGCCTTGGATACCTTTTTTGGCATGCTTAAATCTCCCTTTCGACCGGAG
AGACACCGATTTTGACTCCCGTTTCGCTCTTTTTTTAGTGACCACCAAGG
GGAAGGACTCTACACGCACACCCACCCAGTTTATGGCATTTTGAAGTGTT
ATGTGTTTTCAACAGCACCGAGACTGGCGTATTTTGATTGTTCAGCCGGT
TATCGCGGTCGGTGCTAAAAATGAAGACACACACGCACAAAGGTGGGTGG
ACGCTTTCCGTCTTCCGTCACAGTCCCGTGGGCTTTCCGAGCTCCAGACA
GGCGTTGACGCCGCACTTCGTTTCGAAGCCCCTGCGGGTTTTTGGGTTCG
AAACCAACCACAAGTCTTCGTGAACACATCGTACATTTTTGCTGTCTCTA
TGTTCATTTTTTGGACAAAGGAAAGAACGAAGTTCAGGTGTTTCGCCAGA
TGATCGCCTAGTCTTGAATACACGGTGGATTTCGTGCTCTATTTTTTTCC
TGACAAAAATATACCATAAATCTAAGTGGTTCGCCAGATGACCGCCTTTT
TGGTCTTCATAAACACAGTCTTTATGAACACACGATACATGTCCCTGTAC
ATATGAAGGTGGCTCTCCAGATTACTGCCTACATTCTCTATGGAAACACG
GTACTGCTGTGTTGTCTCTGTATTATTACCAAATGAAGGTGATTCGCCAG
AAGATCGCCTATTTTTAGTCTTTATAAACATGCGTCACATTGTTGTCTTG
TCTTTCTTCGTAGCGGAAAAAACAGATCGCCTAAAAGTTGAATATATGAT
GAAATTCGGTTTGTTTGGTTGAAAAAATAAAAAAAGCTGGAGGTGGTTCG
CCAGATGACCGCCTATTCAGTATTTTTCAACACGTGGTACATTGCTGTCT
TGTCTTTCTTCGTGGCGGAAAAAACAGATCGCCTAATAGTTCAACACATG
ATGAAATTCTGTTTCGTTTGGTTGAAAAACGAAAACAAAATGAAGGTAAT
TCGCTAGAGGACCGCCAATCTATTTAGTCTCTGTGAACATGCGGTACATT
GCTGTTCTTGTCTTTCTTCGTGACGGAAATAACAGATCGCCCAATAGTTC
AACACATGATAAAATTCTGTTTTGTCTGGTTGAAAAAATAAAATAAAATA
GGTGGTTCGCCAGATGACCGCCGAGCTCAAGGACGCGAAGACGGCGAAGG
ACGTCGAGCAGCGCAGCCTCAACTCCAAGGTCGTGCAGGAGATGGAGCGG
CAGCTGGATGAGCTCAAGGAGTCCAGGAAGCGCCAGGACGAGATGCTGGT
CACGGTTACGGGTGCCCGGTACGGAGTTTTTCAGGCTCTCTTTTTTCGCG
TCTGTTTGCACGGTGTCCGTATTTTTTTCGTTGGAGGAGAAGTTGTGAGT
GTAAGAGAGCGGTGGCGCGGGGCAGGTTCTCATAGTCGTGCATGCCGTAG
TGGTTAGACCATTGACTTCGCATCCCTACAAAGCCGGGATGCAGCACGCG
GGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAG
GTATTTAGTGAGTTGCATGCAGGGTGCGCTGCATCCTGCTAAGGGTGTTA
CGGGTCTCGTGCTTACTTCCTTGCGAACTGATGACAGCTGCCTGTGACTT
AATCTATTTTCTGGTGCTTTCACATCCAGAATCAGTCACGTGTAAGCATT
TTGTAACTGCCTCGAGGGTGCTTGACCAATTTAACACAACGTGGTGCGAT
CACCCCCTTTGCGCGGAGTGAAGGGTTCTCGACCCCGCACATTATCTACT
CGACCACCATTATACATGTAGTTGCCGCAAAAAAAAATCATAAGCCAAAA
CAAAAGTGGTGGCCTGGTTGCCGAGGTCACGAAGTGATCGGCTTGTTTAA
CAACGTCATTGCCAAGCGACGAAAACCCAACCCCGATGGCAAACACCTAG
GGCGAAGGAGAGGGGGGGAGAAAGAGACAGGGACAGAAGGGGGGGGGGGA
ACACAAATAGAGAGAGAAAGGAAGAGATCACAGAGGCTCTTGATTTGGTG
GTTGTGTGTAGCGCTACGTGCAGCGCGCAGGTCACCGCCGGGTGACATTA
CAAGCCACATGCCTCCCTTGTCGCAGTCCGTGTTCCTTGTATTGAGCCGT
GTGTATGTTGATGACTGCACAGCAGCGTGTGCATCGATCGCACCGAGTCG
TGAATGAGGCTCGGGGTTCGGTCGCTGTTGCGGATTGGACCGTCGTTTTG
GGGGGATCGAGGGACGGGGGAAGGGCGAGAGACAGAAGAATGTTCGTGTT
TGTGTGTGAATGAAGAGAGGGCGGGCGGGGGTTCATAATGGAGGATGCAG
AGAGAAGTTGGAGTTCACACACTTGCTCCTTTTGTCTGGACGACGAGTCT
TCGCACAGCCGACAGACAGTCGCAGGCTCATGGGGAGGTTCCTGAGGGCA
CAAAAGTGGTCGAGGATAGATTGTGGTATCATTTCGGTGTGGTTGAGAAC
GAAGGTGATTATATCCCGTCTACTGTCCCCGTCGCTCTTCGCTGTCCCAC
CTACCCAACCCCTCACGGCATATCTGTTTTGGCACAACAAACACAAGGGT
GATGACCAGCTTCTGGTTCATTCTTGTGGAACGTGGCCTGGGCCGGTGAA
AACCCGGCATATCGATTGCTCCGTTCCGGCGTTGTAGGGATGCGAGCTCG
ATGAGCCAATGTTGCGTTTCCATGAATACACCCCCCGCCCCCTCACGCCT
CCCTCCCCTTGCTGGATCTCTGTCTTTCGTCCCTGTCTTGATCGTCCAGG
GACACGTACCGGCTTGCGCTGGCGCAGGAGGCGATGAAGAGCGGGGGCGG
GGGAGGAGCGTCCTCCGCTGCCAACGCGGCCGCCGCTCAGGAGCTGGAGG
CCATGAAGAGCCGCGTGCACGAGCTGGAGAGGGTAAGTGTTGGCATTGTT
GCACTTTGAAGATGACCAGTTGTTGTTGTTTTTGTTGTCGCGTGCTTTTT
TTGGCGCCGTAGCCCCTTCCCTGCCCGCCTCGCCCGATGCACCGAACACA
TTTGTTCCATAAACCCAAGACCACTTTTGTTGCTGTTTTCTGACCAACGC
CAACCGATGACCGCAACAAATTGCACCACAACAGGACTTGGGCGTCTCTC
GCGAAGAGTCCCGCAAGCTCCAGGAGTCTCTGCGGCTGATGGGTGAAGAG
GTTACCACGGCCGAGCGCGCGCAGAGCAAGGCCACGGCGGACTTTGCCTC
GGCTCAACGGGTGCTCAGGTGGGCTGCTGCTGCCGCTGCTGCTCCTGCTG
TTGATCACATATACCGTAAATGACACAAGATAACACACCCCCTGGACGGA
CTTTCAAGTGTCGGTTTCTCATAAGAAAGAAAGAGCCACAGCGCTGAAAA
CGGTGGCTTTGAAGGTGTCTCGTCCAGAGCCTTCCGAAAATGTGTTGTTT
CATGTTTGCATCCTCTTTGTCGTGGCGTAGTCGAGCGTTGAAAATTGGTC
CAGGGGGTGTGTTATCTTGTGTCATGTACGATAGTTGTTCATAGTTGTTC
TCCTGTTGCTGCTGTGGATGGTCAAATTGGTGTTCATAGTTGTTTTCCTG
CTGCTGCTGTGGATGGTCATGTTGTTGTCCATAGTTGTTTTCCTGGCCGC
TGGATTGGATTGCCCCACCTGCTGGTGTTGATGGTCAAATGGTTGTTCGT
GTGCCTCTTTTCATCCCTTTGCGAAAGGAGAGCCAAGCATGTTTCTTCCC
CCCTGTGTGTGCTCACGCATATGAAAGATGAAAAAAAACGCGGTGAAGCA
GTCGTGGGACTCCTCCATTGGACGGGTATTTGCTATTTAGGCCGATCCAT
CCTCGCCTTATGGCGTGCACCCGCCCTATTGAAAGCATAAGATAAAATTT
GATTGCTTTCCACCTGTGCCAAGAGGGTTCACCCGCTATACCTGCAACCG
GCCCTACATAACCCCCACTATAGAGGGCCCACCGCTGCATGACGACGATT
TATGCCTTTTGCTGGAATTGCCTGGCGAGCGTCTAGCCTATGGCACGGCG
CTAGACATGGTTACATGTGTGTGTCTTGAGTACATGCATTGACATCAACC
GCCTTACCAGCTGGCAAATGAAAATACGTCAATCTCATCACGTGTGTACC
TGTTCATGGCCTGTGTGCTGTGCTGTGCTGTGCTGCGTTGCGCTGCGCTG
CGTTGCGCGACTGCTTGCATGTCAGCCACGCCGAGGACCAGGTGAAGACC
TTGATGGCCGACCGGGCCTCCAGGACCAAGCAGCTCGACGTTGCGTCGGA
CAAGTTCATGAGGCTGAGCGGCAACGTGGTTAGGCTTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8608:164..6203+

>mRNA_Ecto-sp13_S_contig8608.20035.1 ID=mRNA_Ecto-sp13_S_contig8608.20035.1|Name=mRNA_Ecto-sp13_S_contig8608.20035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8608:164..6203+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACTGATGCAGATGGAGAGGGAGCTGGAGTACGTCCGCAGCGACCG
GGACCGTAACCAGCTGTACCTCACCAGGATCTTGAGAGAGGTCGATCAGA
AGAGCCCCCTCCTGATGAGCAACAAAAAGGACTACCAGCGAGTGCTGCAG
TCCCACGAGCAGCTCTTCCTCAAGGTGGAGGCAAGCATGCGCCGCTGCCA
GAAGGCCGAGATGGAGAGGGAGGTGGCCGCGAGGGGCAGGGACCGCATCG
AGCGGGAGCTGGAGGACAAGCTCGAGCGGGATCTCGGCCGCCCCGTCGAG
CGCAACGGCGGCGGCGGTGATGGTGGGGTTTCCAAGGGAGGGAACGTCGT
CCCGCAGGATCTCGATCAGGTGATCTCCGACCACTTGGTGACATTCCAGG
ACATCCGGGAGCTGCAAGAGCGCAACAGGTCCCTGGTGCAGGTGGTTCGC
CAGATGACCGCCGAGCTCAAGGACGCGAAGACGGCGAAGGACGTCGAGCA
GCGCAGCCTCAACTCCAAGGTCGTGCAGGAGATGGAGCGGCAGCTGGATG
AGCTCAAGGAGTCCAGGAAGCGCCAGGACGAGATGCTGGTCACGGTTACG
GGTGCCCGCCACGCCGAGGACCAGGTGAAGACCTTGATGGCCGACCGGGC
CTCCAGGACCAAGCAGCTCGACGTTGCGTCGGACAAGTTCATGAGGCTGA
GCGGCAACGTGGTTAGGCTTCAG
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