mRNA_Ecto-sp13_S_contig8605.20033.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8605.20033.1
Unique NamemRNA_Ecto-sp13_S_contig8605.20033.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: D8LRJ6_ECTSI (Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ6_ECTSI)

HSP 1 Score: 674 bits (1738), Expect = 9.820e-243
Identity = 354/378 (93.65%), Postives = 362/378 (95.77%), Query Frame = 3 
Query:   75 MDFNTSTHRRHWLFTKETLREVQEETAKLAAEACAAGTPPEGSRSFAVTRSTAGNKSGGQVTTDSEEGTLDVKGEGGVPATDTGEGDGGGKGHWDGSGKKRPAPTAPSAELLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDILVTDLPFLHPPSRLALAALLRESRRMEAPPFDLPALLGKEFGDREGWQDVLREAQRLALELDAILPYRVEKDKLIAVNKKLKKHAWWSQKRGRVEGGGGRERRKSKKIKTEA 1208
            M+FN+STHRRHWLFTK TLREVQEETAKLAAEACAAGTPPEGSRSFAVTRSTAG+KSGG+ TTD+EEGTLDVKGEGGVPATDTGEG          SGKKRPAPTA SAE LLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATA+AYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDI+VTDLPFLHPPSRLALAALLRESRRMEAPPFDLPALLGKEFGDREGW+DVLREAQRLALELD ILPYRVEKDKLIAVNKKLKKHAWWSQKRGR EGGGGRERRKSKKIKTEA
Sbjct:    1 MEFNSSTHRRHWLFTKGTLREVQEETAKLAAEACAAGTPPEGSRSFAVTRSTAGDKSGGRATTDNEEGTLDVKGEGGVPATDTGEGXXXXXXXXXXSGKKRPAPTASSAEPLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAIAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDIVVTDLPFLHPPSRLALAALLRESRRMEAPPFDLPALLGKEFGDREGWKDVLREAQRLALELDEILPYRVEKDKLIAVNKKLKKHAWWSQKRGRAEGGGGRERRKSKKIKTEA 378
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: A0A7S3XH57_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XH57_HETAK)

HSP 1 Score: 134 bits (338), Expect = 1.390e-34
Identity = 69/133 (51.88%), Postives = 96/133 (72.18%), Query Frame = 3 
Query:  396 SAELLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKA 794
            S    LTVEEE ++K YY+  IQ  CGR++ +  LRRS KVQATA+ +F RFYL+NS++ +DPKI++LTCV+LASK EE++ NV  LA+ATG  + ++L  E+ +LQGL F L  +HPYRAL A ++   + A
Sbjct:   11 SDSSFLTVEEESMLKIYYSGMIQALCGRNTDELKLRRSSKVQATAIVFFKRFYLANSIMAYDPKIIMLTCVYLASKIEEEIINVADLAQATGQQEDKVLRAEMPVLQGLRFELRCYHPYRALRAFLDDLAVAA 143
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: A0A7S4ARS1_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ARS1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.210e-33
Identity = 98/282 (34.75%), Postives = 146/282 (51.77%), Query Frame = 3 
Query:  378 PAPTAPSAELLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDL-----QILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTE------------GIPPQPERIMALHDGARAALDDILVTDLPFLHPPSRLALAALL----RESRRMEAPPFDLPALLGKEFGD------REGWQDVLREAQRLALELDAILPYRVEKDKLIAVNKKLKKHAWWSQK 1142
            P  T  S E L T+EEE L+ ++YA K+    G  +    LRR  KV ATA     RFYLSNSV+ HDPK ++++  FLASK E+ MT+V  L + T L +      +IL  E  LL G++F L  FHPY+A+ A+ E  R   K+E              P   + +  +HD A++ ++D++V+D+P L+ P ++ LAAL+    ++  +   P  DL   L   F D      R   +++  + Q L         Y+V+  KL  ++KKLKK   W  K
Sbjct:   68 PTHTEDSKEFL-TLEEENLLVSFYASKLPSLIGPLAQLPRLRRESKVPATAATLLRRFYLSNSVMIHDPKTIMVSAAFLASKVEDAMTDVRYLEEGTNLMNSPVTLSEILPAETKLLSGINFELLCFHPYKAVLAITEDLRTYLKSEKGRSLVKFLNGTDRPIIGQDLKPMHDDAQSIVNDVIVSDIPLLYTPGQIGLAALIVANEKQRGKDNVPQIDLMGYLSHRFEDADIARMRSLLKEIGTKLQELKEGQHGCANYKVDMQKLKGIHKKLKKCRVWGVK 348
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: A0A8K1C540_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C540_PYTOL)

HSP 1 Score: 132 bits (332), Expect = 5.180e-31
Identity = 75/190 (39.47%), Postives = 116/190 (61.05%), Query Frame = 3 
Query:  411 LTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDILVTDLPFLHPPSRLALAALLRESRRMEAPPFDLPAL 980
            L+VE+E LV+ YY  K+QE+C      +  R SDKV+ +AV  F RFYLSNSV+E  PK ++ T +++A K EEQ  NV+ +A    +D   ++  E+ LL+G+ F L ++HP+RAL   V+  R  +K +G     E +  LH  +   ++++L+T+LP +H P+ LALAAL   +  +E    + PAL
Sbjct:  116 LSVEQERLVREYYESKVQESCS-----QLFRTSDKVKCSAVMLFKRFYLSNSVMEFHPKYIVPTAIYVAGKVEEQYINVDTIADQLKVDHKHVIDHEMILLEGVRFQLIMYHPFRALLGFVDDFRGFSKAQGRDLPLEALQKLHANSCVVVNELLLTELPLVHYPAYLALAALCHVAEELER---ETPAL 297
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: A0A662YDE0_9STRA (CYCLIN domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDE0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.880e-30
Identity = 74/175 (42.29%), Postives = 111/175 (63.43%), Query Frame = 3 
Query:  408 LLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMA-LHDGARAALDDILVTDLPFLHPPSRLALAAL 929
             L+ ++E L++++Y +KI E+C      + LR SDKV+  AV  F RFYLSNSV+E  PK ++ T +++A K EEQ  +V+ +A    +D   I+G E+ LL+G+ F L ++HP+RAL   ++  R+ AK       P  ++  LH  + A L+D+L+TDLP LH PS LALAAL
Sbjct:  104 FLSADQEALLRDFYEQKIVESCSA----QFLRTSDKVKCCAVLLFKRFYLSNSVMEFHPKFMVPTAIYVAGKVEEQYMSVDTVADQLHVDHKFIIGHEMVLLEGVRFQLIMYHPFRALLGFLDDFRVFAKQALAKELPANVLQKLHANSSALLNDLLLTDLPLLHYPSYLALAAL 274
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: A0A024GEU2_9STRA (CYCLIN domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GEU2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.480e-30
Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 3 
Query:  405 LLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDILVTDLPFLHPPSRLALAAL 929
            LL ++EEE  +  +Y  K+QE+C      +  R S+KV+++A+  F RFYLSNSV E  PK L+ T +++A+K EEQ  +V  +A+   +D   ++G E+ LL+G+ FHL ++HP+R L   V+  RL AK +G     E +  LH  A   +++ L+TD+P L+ P++LALAAL
Sbjct:  107 LLPSLEEEKTLVEFYESKVQESC-----TQLFRTSEKVKSSAIQLFKRFYLSNSVAEFHPKYLVPTVIYVAAKVEEQYISVETIAEHLKVDHKHVIGHEMILLEGVRFHLIMYHPFRPLLGFVDDLRLYAKAKGKQLPLELLQILHTKASVVVNEFLLTDVPLLYHPAQLALAAL 276
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: D8SKW4_SELML (Uncharacterized protein CYCH-2 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKW4_SELML)

HSP 1 Score: 128 bits (321), Expect = 4.920e-30
Identity = 101/287 (35.19%), Postives = 139/287 (48.43%), Query Frame = 3 
Query:   78 DFNTSTHRRHWLFTKETLREVQEETAKLAAEACAAGTPPEGSRSFAVTRSTAGNKSGGQVTTDSEEGTLDVKGEGGVPATDTGEGDGGGKGHWDGSGKKRPAPTAPSAELLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARL---KAKTEGIPPQPERIMALHDGARAALDDILVTDLPFLHPPSRLALAAL 929
            DF TSTHR  W+FT + L E        A +A          +    TR                   ++++ +G +             G  +G+  K P P        L +EEE  ++ YY  KIQ+ CG  S        +K+QATAV YF RFYLS SV+EHDPK ++LTC++++ K EE   +   L K    D   IL  ELTLLQGL+F L V+ PYR+L   V   +     AK E +    ++I+ L   A   +D +L+TD P L PP +LALAAL
Sbjct:    3 DFLTSTHRDRWIFTVQDLVEKASAANARAVQAL---------QQHGATR-------------------VEIQPDGSLAYP----------GSENGAPSKLPEP--------LKIEEELFIRRYYEHKIQQVCGAFSFP------NKIQATAVLYFKRFYLSWSVMEHDPKHIMLTCIYISCKVEEFHVSAEELGKGIQQDHQVILKNELTLLQGLNFDLIVYAPYRSLDGFVLDIQKWADAAKDENVS---QKILDLQSEAIRKVDAMLLTDCPLLFPPGQLALAAL 234
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: H3GBD3_PHYRM (CYCLIN domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBD3_PHYRM)

HSP 1 Score: 129 bits (323), Expect = 9.140e-30
Identity = 76/175 (43.43%), Postives = 109/175 (62.29%), Query Frame = 3 
Query:  408 LLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMA-LHDGARAALDDILVTDLPFLHPPSRLALAAL 929
             L  E+E L++ +Y +KIQE+C      + LR SDKV+  A+  F RFYLSNSV+E  PK L+ T +++A K EEQ  +V+ +A    +D   I+G E+ LL+G+ F L ++HP+RAL   ++  R  AK       P  ++  LH  + A L+D+L+TDLP LH PS LALAAL
Sbjct:  103 FLNPEQEALLRAFYEEKIQESCSA----QFLRTSDKVKCCAMLLFKRFYLSNSVMEFHPKFLVPTAIYVAGKVEEQYMSVDTVADQLHVDHKFIIGHEMILLEGVRFQLIMYHPFRALLGFLDDFRAFAKQVLSKDLPATVLQKLHANSTALLNDMLLTDLPLLHYPSVLALAAL 273
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: A0A421F9D0_9STRA (CYCLIN domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F9D0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.280e-29
Identity = 74/175 (42.29%), Postives = 111/175 (63.43%), Query Frame = 3 
Query:  408 LLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMA-LHDGARAALDDILVTDLPFLHPPSRLALAAL 929
             L+ E+E L++++Y +KIQE+C      + LR SDKV+  AV  F RFYLSNSV+E  PK ++ T +++A K EEQ  +V+ +A    +D   I+G E+ LL+G+ F L ++HP+RAL   ++  R  +K       P  ++  LH  + A L+D+L+TDLP LH P+ LALAAL
Sbjct:   68 FLSAEQETLLRDFYEEKIQESCSA----QFLRTSDKVKCCAVLLFKRFYLSNSVMEFHPKFMVPTAIYVAGKIEEQYISVDTVADQLHVDHKFIIGHEMILLEGVRFQLIMYHPFRALLGFMDDFRAFSKQVLSNDLPATVLQKLHANSCALLNDMLLTDLPLLHYPAYLALAAL 238
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BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Match: F0W4T4_9STRA (CyclinH putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4T4_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.450e-29
Identity = 68/175 (38.86%), Postives = 113/175 (64.57%), Query Frame = 3 
Query:  405 LLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDILVTDLPFLHPPSRLALAAL 929
            LL ++EEE L+ ++Y  K+ ++C      +  R S+KV+++A+    RFYLSNSV E  PK L+ T +++A+K EEQ  +V  +A+   +D   ++G E+ LL+G+ FHL ++HP+R L A V+  R+ AK +G     E + +LH  A + ++++L+TD   L+ P++LALAAL
Sbjct:   97 LLPSLEEENLLVSFYQSKVHDSCS-----QLFRTSEKVKSSAIQLLKRFYLSNSVAEFHPKYLVPTVIYVAAKVEEQYISVETIAEQLKVDHKHVIGHEMILLEGVRFHLIMYHPFRPLLAFVDDLRIYAKAQGKQLSLELLQSLHTKANSVVNELLLTDATLLYHPAQLALAAL 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8605.20033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRJ6_ECTSI9.820e-24393.65Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A7S3XH57_HETAK1.390e-3451.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4ARS1_9STRA2.210e-3334.75Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A8K1C540_PYTOL5.180e-3139.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662YDE0_9STRA1.880e-3042.29CYCLIN domain-containing protein n=1 Tax=Nothophyt... [more]
A0A024GEU2_9STRA2.480e-3040.57CYCLIN domain-containing protein n=1 Tax=Albugo ca... [more]
D8SKW4_SELML4.920e-3035.19Uncharacterized protein CYCH-2 n=4 Tax=Selaginella... [more]
H3GBD3_PHYRM9.140e-3043.43CYCLIN domain-containing protein n=1 Tax=Phytophth... [more]
A0A421F9D0_9STRA1.280e-2942.29CYCLIN domain-containing protein n=3 Tax=Phytophth... [more]
F0W4T4_9STRA1.450e-2938.86CyclinH putative n=1 Tax=Albugo laibachii Nc14 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8605contigEcto-sp13_S_contig8605:2..6420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score132.1
Seed ortholog evalue5.4e-28
Seed eggNOG ortholog88036.EFJ37640
Model size1246
KEGG koko:K06634
KEGG Pathwayko03022,ko03420,ko04110,map03022,map03420,map04110
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000307,GO:0001101,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009628,GO:0009637,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010035,GO:0010118,GO:0010119,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016301,GO:0016310,GO:0016538,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071704,GO:0071900,GO:0071902,GO:0072593,GO:0080090,GO:0080134,GO:0098772,GO:0140096,GO:1901407,GO:1901409,GO:1901564,GO:1901700,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990069,GO:1990234,GO:2000070,GO:2000112,GO:2001141
Exons11
EggNOG free text desc.Belongs to the cyclin family
EggNOG OGs37HSZ@33090,3G8BQ@35493,COG5333@1,KOG2496@2759
Ec32 ortholog descriptioncyclin H
Ec32 orthologEc-12_000030.1
Cds size1137
COG Functional cat.D
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8605.20033.1prot_Ecto-sp13_S_contig8605.20033.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8605 37..6346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.0943217-UTR-Ecto-sp13_S_contig8605:1..361681464133.0943217-UTR-Ecto-sp13_S_contig8605:1..36Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8605 2..36 -
1681464133.2331476-UTR-Ecto-sp13_S_contig8605:6346..64201681464133.2331476-UTR-Ecto-sp13_S_contig8605:6346..6420Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8605 6347..6420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.1078615-CDS-Ecto-sp13_S_contig8605:36..1801681464133.1078615-CDS-Ecto-sp13_S_contig8605:36..180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 37..180 -
1681464133.119468-CDS-Ecto-sp13_S_contig8605:425..5531681464133.119468-CDS-Ecto-sp13_S_contig8605:425..553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 426..553 -
1681464133.1311028-CDS-Ecto-sp13_S_contig8605:942..10061681464133.1311028-CDS-Ecto-sp13_S_contig8605:942..1006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 943..1006 -
1681464133.1419532-CDS-Ecto-sp13_S_contig8605:1573..17321681464133.1419532-CDS-Ecto-sp13_S_contig8605:1573..1732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 1574..1732 -
1681464133.1531665-CDS-Ecto-sp13_S_contig8605:1999..21201681464133.1531665-CDS-Ecto-sp13_S_contig8605:1999..2120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 2000..2120 -
1681464133.1676433-CDS-Ecto-sp13_S_contig8605:2546..26201681464133.1676433-CDS-Ecto-sp13_S_contig8605:2546..2620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 2547..2620 -
1681464133.1789563-CDS-Ecto-sp13_S_contig8605:3002..31071681464133.1789563-CDS-Ecto-sp13_S_contig8605:3002..3107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 3003..3107 -
1681464133.1900358-CDS-Ecto-sp13_S_contig8605:4191..43041681464133.1900358-CDS-Ecto-sp13_S_contig8605:4191..4304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 4192..4304 -
1681464133.2007253-CDS-Ecto-sp13_S_contig8605:5100..52061681464133.2007253-CDS-Ecto-sp13_S_contig8605:5100..5206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 5101..5206 -
1681464133.212155-CDS-Ecto-sp13_S_contig8605:5671..57361681464133.212155-CDS-Ecto-sp13_S_contig8605:5671..5736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 5672..5736 -
1681464133.2226317-CDS-Ecto-sp13_S_contig8605:6288..63461681464133.2226317-CDS-Ecto-sp13_S_contig8605:6288..6346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8605 6289..6346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8605.20033.1

>prot_Ecto-sp13_S_contig8605.20033.1 ID=prot_Ecto-sp13_S_contig8605.20033.1|Name=mRNA_Ecto-sp13_S_contig8605.20033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp
MDFNTSTHRRHWLFTKETLREVQEETAKLAAEACAAGTPPEGSRSFAVTR
STAGNKSGGQVTTDSEEGTLDVKGEGGVPATDTGEGDGGGKGHWDGSGKK
RPAPTAPSAELLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQA
TAVAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGL
DDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPE
RIMALHDGARAALDDILVTDLPFLHPPSRLALAALLRESRRMEAPPFDLP
ALLGKEFGDREGWQDVLREAQRLALELDAILPYRVEKDKLIAVNKKLKKH
AWWSQKRGRVEGGGGRERRKSKKIKTEA*
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mRNA from alignment at Ecto-sp13_S_contig8605:2..6420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8605.20033.1 ID=mRNA_Ecto-sp13_S_contig8605.20033.1|Name=mRNA_Ecto-sp13_S_contig8605.20033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8605:2..6420- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCATCCTAGTCTCGCTGTCCTGCGTCGTGCTGATTTGGGTAGGCGTCAC
GTGCAGCAGCCACTTCAGCCGACCATGGACTTTAATACTTCTACACACCG
AAGGCACTGGCTTTTCACCAAGGAAACACTGCGTGAGTCCGATGGAAGTG
GTGCAACGTGTAAATTACCCGCAATGACTTCCTTTTTGTTCCACCATCCA
CTCTGCACGTCTCATTTGTAGCACCGGTACAGCACTGCTACAGCAGCCAC
CATCTCTATGCCTGTGTGTGCTGCCACAGCTTGTGGCTACTACCAGTACC
AGTGACTTCACGTATTCGTGCATCTGGAGCTGGGACCAACGTACACTTAT
GTACAAATGTAACATCTCAAGGAATTTGCCGGGCACATCGAACGTTCGAA
ATCTGACCGCCTGCGGTGTCGAGTGTAAAATTGGAACACTGAGAGGTGCA
TTCAAGTATCTTTGGTGTGCCTCTGTAGCATTAGTCTACAGCACTATGCA
TACTGTACAGCAGCAGTATGTGAGACCACAGAGGTGCTTTCGACAGCAGA
AACAAAAGGTACACCAGAAACAGAAAGAGAAGTACACAGTAGATACTTAC
GGCAGCGAACAATCATAGAGACGATGCCCTTTCCCCTTAGCTACATGATC
CGGCTGCGCACAATCGAACATGAACATGAACCAGGAGAAGTCCAAGAGGA
GACTGCAAAGCTTGCAGCTGAGGCCTGCGCTGCTGGAACTCCTCCAGAGG
TGAGGGAATGCTGTGAAGGCAGATCGTCTTACATGGGCCGACCGAAACAC
GATGACTGCATATGGCAGCTGGTTACACGGCAGGACTGGCCGTAGAAACG
ATGTGCGGACGGTTTACCTTAAGATAGCATCCGATCGCATCCACTTGAAA
ACGCTGTTGTATGCGTACATGGGAGCGAAGAGAATGTGTGCAGGGGCAAC
ACACAGCCAAGATGGAGGCAAATGCATGCACTCCACATAGCAGCCCCCCA
CCGTACGACACGACACCATGATACCATGGTGATGGAACTTGCCTTGCGGT
TTGCTGCGTTTGTTGTTGTCCCCCTATCTCATACTCCAAGGCGAGTAGGG
TACAACCCTGATTCATTTTTCAGACGAACCGTATCTTCTAGTACATGCAG
CCTGCAACACTTGTCTGCCTAGCTGTCTCATGCTGTTACCTACCCTCTCA
CTTGTCCGTTGCAGGGGTCTCGAAGCTTTGCGGTAACGAGGTCGACCGCC
GGCAACAAGAGCGGCGGGCAGGTTACCACGGACAGTGAGGAAGGAACTCT
GGACGTGAAGGGGGAGGGAGGTGTGCCTGATAGGAAAATTCAAGAGCTTA
GTTCGCGGCTCGCCTATGTGTGCAGACGAAATTGAATTGACAGCAAGCTG
ACCCAGGTGGCGGGCACATCACCGCTGCAAGAAAGACGGACTAACGTGTC
ATGTCTAGAGGTTGGCTTGCAATGTGTGCAGGCCGTCTCTTTGTTGAGCC
TGCCGATACCGTTCTACAACAGCCATGTTGCGTAGGCTCTGCCCGCCGCG
TATTTGTATGTTCTCCCATCGAGTACTTCGCCGTTTCGGCACCGCGATGG
TTTTGACATGTACGACATCACGATGTTTGATTGCCATACCAACCACCCTC
AGTCAAGCATGCTGCCGGATGTGGTTGTACATGGCCAGCTGTGATGTATG
GAAGATTGATTGCAGGGAACAAGCGGTGCTTGAACTTCAGAATGGTACCA
TACATCTACGGCAGTACGCTGTGCCGATCTCCCCCGGTTTCGGCGATAAA
TTGTACGTCCGACACTCTTTGTACTGCTGTTCCTCAAATACTAAATACCG
GACACGTGCACTGTTGAGACACATACCGGTTTGGCATCGACAACAGCTTC
GATTTTCTTTCTGTCCATGTCCGCCGCTGTTCCAATCCAATCTCAAGACA
CTCCACCCGTTGTACGCACAAGTCTGGCTGCTTGTCTTGGAATGCGTGAT
TTGCAATGTTGGAGTGTGGCCGTTTGACGCCCGAACGCGGCTCGTCATAG
CTCACCGCTTGGAAGTCCCGAGTAGCCTGACTCACTTGTCTATTGGTGCT
GACATACTGACGGCAGGAGTGCCAGCCACGGACACCGGAGAGGGCGACGG
TGGCGGGAAAGGGCACTGGGATGGGAGCGGGAAAAAAAGACCAGCGCCGA
CTGCGCCATCGGCGGAACTACTGCTCACGGTATGCCGGCCGGGCGCGTTT
ACATGTGGTAACATGTGCATTCAGGATGTGCTTTTGTTTCGTGGCCCGCG
GCCGCAGGCAAGTGCGCCCACTCGTTATTTAGTCGATCGACGAAGAAAGC
ACAACATAAATGCGGTGCAGCTACAATATACGTCTCTACCCCCTGCCGTG
TTTCCTGTGGCAGCTGTGAAAGAGTTCAGGGATGAACGTTGGTCCTCATG
GAAACGTTCAAGTCCCATTATTTTACCCGCGTTCTGTGCAATAGACAGCC
TACCCGAGGAGTGGGTTCAAGTAGCACCGCGTCAGACGGTGATGCAAGAA
CATGTGCAAAAAGCCAACAGAGGAAAGCCAGATCTCTTATGCATATGTAT
GCGTGTGCCGAATGCACACGTGGTATACGTGTGCGTGCCGACGTCTGAAC
ATGAGGCTCAGGGGTCTGCACGGTGCCCATTGCTGCCCTGCATCACCTCG
ATCTACAGCCGCTCTGACAGCTGCCGCGCAAGCGCTCAGCTGTTTGCATG
TGCTGACACAACTACTGCTATTTAACTTCAGAAACAGCTGTCATCGCTTT
TGTTTTGGTTGCAGCTGGAGCTGTTCATGTAGAATGCTGAAGTGTGTACT
TGCTTCTTGACATGGCGATTGACGCTGACGCACGTCCATAGTCGTACAGC
CCCAAAAAACTTGTTGAGGTTCTGGAGAAGGATTTACAAATCAGTATATG
GTCTTGCCGTATGATGAGGACCCGATGCGCGAGATTCTGGAATTTTGGTA
TTGGCTGTCTGCAAGTAAATAGCGTTGTGGACGTCCGTCATTTTGGCTCG
CATCCATGGAGGTAGTTGTCGCCCCCGAATAATGACCCTCAAGATCCCCC
CGGCCTGTGTAACGGAATGTGAACCGTCTCGTCATTCCGACGCGCCGATG
GAAGGAGAGTTTTTCTCCCCCTACCTCCCGCTGCGTCTCGGCTATACCCC
CTAAAAAGTCCATTCGTACGAATCTACCCCCGTCGCTGTGCTTCTGATTT
TCGCACCGAACCTGAACGTGTGCCTTCCTTTCTGACGACGCCGTGGGCTT
GGGATAAGGAAAGGTGGAGGAAGAGTGCCTAGTGAAGAATTACTACGCGA
AGAAAATTCAAGAGACGTGCGGCCGCGACTCGGCAGATGAAGATCTACGG
AGATCTGACAAGGTCCAGGTACGAACCGCACCCATTCGGAAGGAGACGGA
GGTTCACTTTCTAGACGACAGCTGTCGGCGATCTACTCTGCCAGTGGCAG
ACACGGCTGATTTCGCACGTTTCCGGAAGTGATTTCGGCAAGCGTGGCGC
GGTCGCACTTTTCCCCAGTGTAAGCACTGTTCGCGCGTTTTCGAAGAAGG
AAGCTACAATAGTTCGGTCATGATGGCTTTGCCATTCGTGATTGATTCGT
TGTTCGCCGTCGGTCATGACGATCGCGTAGTCGTCATGGAGGCACACCTC
AGCATACCTTAGCCTCTTTCTGACCCCCCGTCTCTGCCGTCATCATGTCC
TTCGCTGTTTGTTCCCCTCCCTGTCGCGCTCGGACTACTCCCGTCCGCAG
GCGACCGCTGTTGCTTACTTCCACCGCTTCTATCTATCCAACAGCGTGCT
CGAACACGATCCGAAGATCTTGATGTAAGACAAGACAGACTGCAGTTGTG
AAGAATGTTGAGAGAGACCAAGAGAGAGAGAGAGGGGGGGGTGGGGAGGG
AGGCAGAGAGAAAGAGAGTGGGAGGCACGTGTGACCCAGCAGTCCTCCCT
TGGTGGTGCTGCAAGGTTTGGTACTGTATGTCTTTTCGTCTCACTTGATT
TTTTCTGCCGAGTTTGGCACCCTTTGAATCCCACCCGGTCCTGAGAAGTA
TTCATGTCTGCAGATTACTGTTAGTGCTTTTGCTCTATGCATACGACGGG
TAGTTCAATCGGCCCTGGTTTGCGAAGCTGTTTGATATCGAAACACGATG
TTAGGTTTTGGACTCCGGGGATCCCCGTCAAGTTTCTTACGCCTGAAGTA
CAAGTTCCCTCCGCCAACCCCGATGCCCCCACTCCCCGTGAATCATACAG
CTTGACGTGCGTGTTTCTGGCGAGCAAGACTGAGGAGCAGATGACCAACG
TGAACCTTTTGGCGAAGGCGACGGGGCTCGATGACTTACAGATCCTGGGG
AAGGAACTGACCTTATTGCAGGTGGGTTGGAGCGATGTTGGCTGCTGCGA
CCAGGGGACGTATAGGGGATAGGGCACGTCGATGGTAAGCCAACCACCAG
TGCTCCCAAGCCACGCGTTGAAGTTGACGGACTGGCGATCATCCTGCAAC
GAGCTGCGGCGGTTCCTCTCTCTCTCTCTCGCCTTCGGGTCGCTAGTTTC
ACGTCGTGTATCACGAAACAGCCAAACCGAACACAATGTTGATGTTTCTG
CTTGCTCTCGTGCCCCTGCCGAAACGAAACTGTATCAGGGTCTGAGCTTT
CACCTGGCGGTGTTCCACCCCTACAGAGCTCTACCGGCGCTGGTCGAGGG
TGCCCGGTTGAAAGCCAAAACGGAAGGGATCCCGCCGCAGCCGGAGAGAA
TCATGGCACTACACGATGGAGCCAGGGCTGCCCTCGACGATATTTTGGTG
AGATGAGATGGCGCACCTAGCATCGAGCGCAAGGGCTACAACCGCCGCTG
TGCTAATACGAGAGACTACTTGGGGCGCGTTGAATTCGTTCTTGGAGCGG
CGTGATACTCTTTTGTGATGGTGCGAAGCACACAAAAGTGGACGCCCATG
AAATAGGTGCGTGTTTTGATTTCTGATGCCCAGAAAGGCGTTCGCCTCAG
CATCGCACATAGCATGATGACACCAACCGGGCCGCTGACATGTGTGCAGT
CCCGTGTATTCTTAACTAGGGTAGTAGCGTGCGGTCGCTACCCTTTTGGA
TGTCATACAACCGCATGGAGATGATCGCAGCAGCAGAGGCACTGCTGTTG
TTTTCAACTCGCCATCTTGTGCGGGCCAGCGAAGCGATTACGCACGATGT
CATTTGGCTGTTCGACTGTAACCTTTGGTGTTTGAAACGTTCGCAAAATT
TGCAAATGGTACAACCTTGAAGCTTTTGTGTTGCGTTCCTGTCGCCCCCT
CTCACCCTTGAAAATATCGTCCGCGTGGCCCTATTTCTACATGTACGCTT
CTCGCGAATGAAAGGTGACCGACCTTCCGTTTCTCCACCCGCCCTCGCGA
TTAGCATTGGCCGCGCTGCTCCGAGAATGTGAGTTCATGCCTTTTAGTAG
ACAGCACAGCAGTGGGGGTAGGCTAGAGTGTGCGTCGACCCTGGTTTGGT
AACATCAACCCAGACGGCGTCGTGCCCTCAACTACTGTGCTGACGAACCA
AAACCTTGTGCTTGTTTTTTTCTCATCCTCCCTTAGGGCTTTGCCCCACA
AACTATTGGAAGTGTTGATGACTAGCCTGCCGAGTACGTCACGGAAGGAA
GACGCCACAGCAGCTCGTCGATAACATGTCGCTACCTCGCCGGTTTGTAG
TGTTGTTTCTTGCGGTATACTGTATGGATGTCGACCTGATGCCGCCCAGC
GACAGACTGCCTGCAACGAACCACTCCCCCCTGCCCCCGCCCCGGCGCTC
TTCCTATGTGAACACAGCGCGTCGAATGGAAGCACCTCCGTTTGACTTGC
CCGCTCTGCTAGGCAAGGAATTCGGCGATCGGGAGGGCTGGCAAGACGTG
CTGAGAGAGGCCCAGCGGTTGGCCCTAGAGTTGGACGCAATTTTGGTGAG
AAGCGAGAACCACAACATGTACAGCTTGAAGCCGTGACTGCTCTATCGGC
GAGATCACATGTAGTCTATCATTCAAACATTTACGTATCGGGAAGTGGAT
CCGGAACATCCTCAAGCCCAAGTTTGCCGGGGACCCTACCCGACGCCCAC
CCCCACAACACCCGCGCAATCCGGTAACCGTAGCGCCTTCGCCCGGTTCC
CCGTGCCCTCCCCCGTTACATACCACACGTCACACGGTAGCCGTATCGAG
TGGAAAAGGACAAGCTGATCGCGGTCAACAAGAAACTCAAGAAGCATGCG
TGGTGGTCGCAAAAGAGGGGTCGTGTTGAGGGTGGAGGCGGCCGCGAACG
GCGCAAGAGCAAGAAGATCAAGACCGAGGCATAGCATTGCACGGCACGTC
CTGACGCCAGGGTATATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8605:2..6420-

>mRNA_Ecto-sp13_S_contig8605.20033.1 ID=mRNA_Ecto-sp13_S_contig8605.20033.1|Name=mRNA_Ecto-sp13_S_contig8605.20033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8605:2..6420- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTTTAATACTTCTACACACCGAAGGCACTGGCTTTTCACCAAGGA
AACACTGCGAGAAGTCCAAGAGGAGACTGCAAAGCTTGCAGCTGAGGCCT
GCGCTGCTGGAACTCCTCCAGAGGGGTCTCGAAGCTTTGCGGTAACGAGG
TCGACCGCCGGCAACAAGAGCGGCGGGCAGGTTACCACGGACAGTGAGGA
AGGAACTCTGGACGTGAAGGGGGAGGGAGGAGTGCCAGCCACGGACACCG
GAGAGGGCGACGGTGGCGGGAAAGGGCACTGGGATGGGAGCGGGAAAAAA
AGACCAGCGCCGACTGCGCCATCGGCGGAACTACTGCTCACGGTGGAGGA
AGAGTGCCTAGTGAAGAATTACTACGCGAAGAAAATTCAAGAGACGTGCG
GCCGCGACTCGGCAGATGAAGATCTACGGAGATCTGACAAGGTCCAGGCG
ACCGCTGTTGCTTACTTCCACCGCTTCTATCTATCCAACAGCGTGCTCGA
ACACGATCCGAAGATCTTGATCTTGACGTGCGTGTTTCTGGCGAGCAAGA
CTGAGGAGCAGATGACCAACGTGAACCTTTTGGCGAAGGCGACGGGGCTC
GATGACTTACAGATCCTGGGGAAGGAACTGACCTTATTGCAGGGTCTGAG
CTTTCACCTGGCGGTGTTCCACCCCTACAGAGCTCTACCGGCGCTGGTCG
AGGGTGCCCGGTTGAAAGCCAAAACGGAAGGGATCCCGCCGCAGCCGGAG
AGAATCATGGCACTACACGATGGAGCCAGGGCTGCCCTCGACGATATTTT
GGTGACCGACCTTCCGTTTCTCCACCCGCCCTCGCGATTAGCATTGGCCG
CGCTGCTCCGAGAATCGCGTCGAATGGAAGCACCTCCGTTTGACTTGCCC
GCTCTGCTAGGCAAGGAATTCGGCGATCGGGAGGGCTGGCAAGACGTGCT
GAGAGAGGCCCAGCGGTTGGCCCTAGAGTTGGACGCAATTTTGCCGTATC
GAGTGGAAAAGGACAAGCTGATCGCGGTCAACAAGAAACTCAAGAAGCAT
GCGTGGTGGTCGCAAAAGAGGGGTCGTGTTGAGGGTGGAGGCGGCCGCGA
ACGGCGCAAGAGCAAGAAGATCAAGACCGAGGCATAG
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