mRNA_Ecto-sp13_S_contig86044.20031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86044.20031.1
Unique NamemRNA_Ecto-sp13_S_contig86044.20031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Match: D8LDS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.080e-18
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV 123
             + +FLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV
Sbjct:   50 EYFEFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV 90
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BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Match: A0A6H5KYY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.840e-18
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV 123
             + +FLVSWIPFYWLGKCLGLGLLYLPGGNIPTV+FERVVV
Sbjct:   50 EYFEFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVLFERVVV 90
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BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Match: G4YIB0_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YIB0_PHYSP)

HSP 1 Score: 46.2 bits (108), Expect = 8.560e-5
Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFE 111
            ++ +F +SW PFY+L KC+ LGLL  P  + P ++FE
Sbjct:   56 QYLEFFISWFPFYYLFKCILLGLLLTPSKHFPHLLFE 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDS5_ECTSI3.080e-1890.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYY1_9PHAE7.840e-1887.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4YIB0_PHYSP8.560e-545.95Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86044contigEcto-sp13_S_contig86044:414..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.2
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D8LDS5
Model size123
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.TB2/DP1, HVA22 family
EggNOG OGs2EAKW@1,2SGUB@2759
Ec32 ortholog descriptionTB2/DP1/HVA22-related protein
Ec32 orthologEc-08_003160.1
Cds size123
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.028743-CDS-Ecto-sp13_S_contig86044:413..5361681464133.028743-CDS-Ecto-sp13_S_contig86044:413..536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86044 414..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86044.20031.1prot_Ecto-sp13_S_contig86044.20031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86044 414..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86044.20031.1

>prot_Ecto-sp13_S_contig86044.20031.1 ID=prot_Ecto-sp13_S_contig86044.20031.1|Name=mRNA_Ecto-sp13_S_contig86044.20031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV
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mRNA from alignment at Ecto-sp13_S_contig86044:414..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86044.20031.1 ID=mRNA_Ecto-sp13_S_contig86044.20031.1|Name=mRNA_Ecto-sp13_S_contig86044.20031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86044:414..536+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACACGCTAAGTTCTTGGTGTCATGGATACCGTTTTACTGGCTGGGCAA
GTGCCTCGGCCTGGGGCTGCTCTACCTCCCCGGGGGAAACATACCTACCG
TGGTTTTCGAGCGGGTGGTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86044:414..536+

>mRNA_Ecto-sp13_S_contig86044.20031.1 ID=mRNA_Ecto-sp13_S_contig86044.20031.1|Name=mRNA_Ecto-sp13_S_contig86044.20031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86044:414..536+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACACGCTAAGTTCTTGGTGTCATGGATACCGTTTTACTGGCTGGGCAA
GTGCCTCGGCCTGGGGCTGCTCTACCTCCCCGGGGGAAACATACCTACCG
TGGTTTTCGAGCGGGTGGTCGTC
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