prot_Ecto-sp13_S_contig86044.20031.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86044.20031.1
Unique Nameprot_Ecto-sp13_S_contig86044.20031.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length41
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Match: D8LDS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.080e-18
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 
Query:    1 RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV 41
             + +FLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV
Sbjct:   50 EYFEFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV 90
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BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Match: A0A6H5KYY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.840e-18
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 0 
Query:    1 RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV 41
             + +FLVSWIPFYWLGKCLGLGLLYLPGGNIPTV+FERVVV
Sbjct:   50 EYFEFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVLFERVVV 90
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BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Match: G4YIB0_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YIB0_PHYSP)

HSP 1 Score: 46.2 bits (108), Expect = 8.560e-5
Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0 
Query:    1 RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFE 37
            ++ +F +SW PFY+L KC+ LGLL  P  + P ++FE
Sbjct:   56 QYLEFFISWFPFYYLFKCILLGLLLTPSKHFPHLLFE 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86044.20031.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDS5_ECTSI3.080e-1890.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYY1_9PHAE7.840e-1887.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4YIB0_PHYSP8.560e-545.95Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004345TB2/DP1/HVA22-related proteinPFAMPF03134TB2_DP1_HVA22coord: 3..40
e-value: 1.5E-7
score: 31.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..41
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86044contigEcto-sp13_S_contig86044:414..536 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86044.20031.1mRNA_Ecto-sp13_S_contig86044.20031.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86044 414..536 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86044.20031.1 ID=prot_Ecto-sp13_S_contig86044.20031.1|Name=mRNA_Ecto-sp13_S_contig86044.20031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
RHAKFLVSWIPFYWLGKCLGLGLLYLPGGNIPTVVFERVVV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22