mRNA_Ecto-sp13_S_contig86034.20029.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86034.20029.1
Unique NamemRNA_Ecto-sp13_S_contig86034.20029.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.440e-32
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQ 
Sbjct:  202 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQA 257
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.650e-32
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            LPADTPRRVCQYAFLKNDIVWICK+CQADETCVLCNDCFRSSDHEGHEVYFYHAQ 
Sbjct:  203 LPADTPRRVCQYAFLKNDIVWICKDCQADETCVLCNDCFRSSDHEGHEVYFYHAQA 258
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S2DRZ5_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRZ5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.790e-26
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            L    PR+VCQYAF KNDIVWIC+ CQADETCVLCN CFR S HEGHEVYFYHAQ 
Sbjct:    4 LSKRAPRQVCQYAFRKNDIVWICRTCQADETCVLCNACFRDSSHEGHEVYFYHAQA 59
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S1XL72_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL72_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.050e-24
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   19 RRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            RRVCQYAF +NDIVWICKECQADETCVLCNDCF  S+HEGHEVYFYHAQ 
Sbjct:  116 RRVCQYAFKRNDIVWICKECQADETCVLCNDCFIDSEHEGHEVYFYHAQA 165
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S3HTB1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTB1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.660e-23
Identity = 35/51 (68.63%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   16 PRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            PR+VCQY F  NDIVW+CK+CQ DETCV+CN+C+++S+HEGH+VYFYH+ V
Sbjct:   75 PRKVCQYQFRTNDIVWMCKQCQRDETCVICNECYQASNHEGHDVYFYHSTV 125
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: W7U0V5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.810e-22
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    7 ADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            A  P R+CQ+AF +NDIVWICK+CQ DETCVLCNDCFR S H+GHEVYFY  Q 
Sbjct:  246 AMAPHRICQFAFKRNDIVWICKDCQKDETCVLCNDCFRLSQHQGHEVYFYQTQA 299
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A1E7FD43_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD43_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.370e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            L    PRRVCQ+ F KNDIVW+C+ CQADETCVLC+ C++ SDHEGH+V FYHAQ 
Sbjct:   63 LSRSVPRRVCQHPFKKNDIVWVCRTCQADETCVLCHACYKGSDHEGHDVAFYHAQA 118
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A448Z6T2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.030e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            L    PRRVCQ+ F KNDIVW+C+ CQADETCVLC+ C++ SDHEGH+V FYHAQ 
Sbjct:  242 LSRTVPRRVCQHPFKKNDIVWVCRTCQADETCVLCHACYKGSDHEGHDVAFYHAQA 297
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7R9VHK1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHK1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.030e-20
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   16 PRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            PRRVCQ+ F +NDIVW+C+ CQ+DETCVLC+ C+  SDHEGH+V FYHAQ 
Sbjct:  129 PRRVCQHPFKRNDIVWVCRTCQSDETCVLCHACYSQSDHEGHDVAFYHAQA 179
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BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S2Y701_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y701_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-20
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   16 PRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 168
            PRRVCQ+ F KNDIVW+C+ CQADETCVLC++C+  SDHEGH+V FYHAQ 
Sbjct:  122 PRRVCQHPFRKNDIVWVCRTCQADETCVLCHNCYSQSDHEGHDVAFYHAQA 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M8_ECTSI1.440e-3298.21E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JTE4_9PHAE3.650e-3296.43E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A7S2DRZ5_9STRA1.790e-2678.57E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dic... [more]
A0A7S1XL72_9STRA1.050e-2488.00E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pha... [more]
A0A7S3HTB1_9STRA3.660e-2368.63E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Spu... [more]
W7U0V5_9STRA6.810e-2272.22E3 ubiquitin-protein ligase n=2 Tax=Monodopsidacea... [more]
A0A1E7FD43_9STRA4.370e-2167.86E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Fra... [more]
A0A448Z6T2_9STRA6.030e-2167.86E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]
A0A7R9VHK1_9STRA1.030e-2068.63E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A7S2Y701_9STRA1.080e-2072.55E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86034contigEcto-sp13_S_contig86034:364..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score127.1
Seed ortholog evalue2.9e-27
Seed eggNOG ortholog2880.D7G2M8
Model size186
KEGG koko:K10625,ko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
Cds size186
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.949837-CDS-Ecto-sp13_S_contig86034:363..5491681464132.949837-CDS-Ecto-sp13_S_contig86034:363..549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86034 364..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86034.20029.1prot_Ecto-sp13_S_contig86034.20029.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86034 364..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86034.20029.1

>prot_Ecto-sp13_S_contig86034.20029.1 ID=prot_Ecto-sp13_S_contig86034.20029.1|Name=mRNA_Ecto-sp13_S_contig86034.20029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVY
FYHAQVPVRRA*
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mRNA from alignment at Ecto-sp13_S_contig86034:364..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86034.20029.1 ID=mRNA_Ecto-sp13_S_contig86034.20029.1|Name=mRNA_Ecto-sp13_S_contig86034.20029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86034:364..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCTGCCGACACCCCGCGGCGAGTGTGCCAGTACGCCTTCCTGAAGAA
CGACATCGTCTGGATCTGCAAGGAGTGCCAGGCGGACGAGACGTGCGTGT
TGTGCAACGACTGCTTCCGGAGCAGCGACCACGAGGGTCACGAGGTGTAC
TTCTATCACGCGCAGGTACCGGTACGACGCGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86034:364..549+

>mRNA_Ecto-sp13_S_contig86034.20029.1 ID=mRNA_Ecto-sp13_S_contig86034.20029.1|Name=mRNA_Ecto-sp13_S_contig86034.20029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86034:364..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCTGCCGACACCCCGCGGCGAGTGTGCCAGTACGCCTTCCTGAAGAA
CGACATCGTCTGGATCTGCAAGGAGTGCCAGGCGGACGAGACGTGCGTGT
TGTGCAACGACTGCTTCCGGAGCAGCGACCACGAGGGTCACGAGGTGTAC
TTCTATCACGCGCAGGTACCGGTACGACGCGCATGA
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