prot_Ecto-sp13_S_contig86034.20029.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86034.20029.1
Unique Nameprot_Ecto-sp13_S_contig86034.20029.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length62
Homology
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.440e-32
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQ 
Sbjct:  202 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQA 257          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.650e-32
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            LPADTPRRVCQYAFLKNDIVWICK+CQADETCVLCNDCFRSSDHEGHEVYFYHAQ 
Sbjct:  203 LPADTPRRVCQYAFLKNDIVWICKDCQADETCVLCNDCFRSSDHEGHEVYFYHAQA 258          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S2DRZ5_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRZ5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.790e-26
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            L    PR+VCQYAF KNDIVWIC+ CQADETCVLCN CFR S HEGHEVYFYHAQ 
Sbjct:    4 LSKRAPRQVCQYAFRKNDIVWICRTCQADETCVLCNACFRDSSHEGHEVYFYHAQA 59          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S1XL72_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL72_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.050e-24
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    7 RRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            RRVCQYAF +NDIVWICKECQADETCVLCNDCF  S+HEGHEVYFYHAQ 
Sbjct:  116 RRVCQYAFKRNDIVWICKECQADETCVLCNDCFIDSEHEGHEVYFYHAQA 165          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S3HTB1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTB1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.660e-23
Identity = 35/51 (68.63%), Postives = 46/51 (90.20%), Query Frame = 0
Query:    6 PRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            PR+VCQY F  NDIVW+CK+CQ DETCV+CN+C+++S+HEGH+VYFYH+ V
Sbjct:   75 PRKVCQYQFRTNDIVWMCKQCQRDETCVICNECYQASNHEGHDVYFYHSTV 125          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: W7U0V5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.810e-22
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    3 ADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            A  P R+CQ+AF +NDIVWICK+CQ DETCVLCNDCFR S H+GHEVYFY  Q 
Sbjct:  246 AMAPHRICQFAFKRNDIVWICKDCQKDETCVLCNDCFRLSQHQGHEVYFYQTQA 299          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A1E7FD43_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD43_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.370e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            L    PRRVCQ+ F KNDIVW+C+ CQADETCVLC+ C++ SDHEGH+V FYHAQ 
Sbjct:   63 LSRSVPRRVCQHPFKKNDIVWVCRTCQADETCVLCHACYKGSDHEGHDVAFYHAQA 118          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A448Z6T2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.030e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    1 LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            L    PRRVCQ+ F KNDIVW+C+ CQADETCVLC+ C++ SDHEGH+V FYHAQ 
Sbjct:  242 LSRTVPRRVCQHPFKKNDIVWVCRTCQADETCVLCHACYKGSDHEGHDVAFYHAQA 297          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7R9VHK1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHK1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.030e-20
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    6 PRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            PRRVCQ+ F +NDIVW+C+ CQ+DETCVLC+ C+  SDHEGH+V FYHAQ 
Sbjct:  129 PRRVCQHPFKRNDIVWVCRTCQSDETCVLCHACYSQSDHEGHDVAFYHAQA 179          
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Match: A0A7S2Y701_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y701_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-20
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    6 PRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVYFYHAQV 56
            PRRVCQ+ F KNDIVW+C+ CQADETCVLC++C+  SDHEGH+V FYHAQ 
Sbjct:  122 PRRVCQHPFRKNDIVWVCRTCQADETCVLCHNCYSQSDHEGHDVAFYHAQA 172          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86034.20029.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M8_ECTSI1.440e-3298.21E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JTE4_9PHAE3.650e-3296.43E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A7S2DRZ5_9STRA1.790e-2678.57E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dic... [more]
A0A7S1XL72_9STRA1.050e-2488.00E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pha... [more]
A0A7S3HTB1_9STRA3.660e-2368.63E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Spu... [more]
W7U0V5_9STRA6.810e-2272.22E3 ubiquitin-protein ligase n=2 Tax=Monodopsidacea... [more]
A0A1E7FD43_9STRA4.370e-2167.86E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Fra... [more]
A0A448Z6T2_9STRA6.030e-2167.86E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]
A0A7R9VHK1_9STRA1.030e-2068.63E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A7S2Y701_9STRA1.080e-2072.55E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003126Zinc finger, UBR-typeSMARTSM00396push_1coord: 8..61
e-value: 4.9E-4
score: 21.2
IPR003126Zinc finger, UBR-typePFAMPF02207zf-UBRcoord: 10..53
e-value: 8.3E-12
score: 45.1
NoneNo IPR availableGENE3D2.10.110.30coord: 10..58
e-value: 2.7E-14
score: 54.9
NoneNo IPR availablePANTHERPTHR21497:SF24E3 UBIQUITIN-PROTEIN LIGASE UBR1coord: 6..54
IPR039164E3 ubiquitin-protein ligase UBR1-likePANTHERPTHR21497UBIQUITIN LIGASE E3 ALPHA-RELATEDcoord: 6..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86034contigEcto-sp13_S_contig86034:364..549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86034.20029.1mRNA_Ecto-sp13_S_contig86034.20029.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86034 364..549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86034.20029.1 ID=prot_Ecto-sp13_S_contig86034.20029.1|Name=mRNA_Ecto-sp13_S_contig86034.20029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
LPADTPRRVCQYAFLKNDIVWICKECQADETCVLCNDCFRSSDHEGHEVY
FYHAQVPVRRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003126Znf_UBR
IPR039164UBR1-like