mRNA_Ecto-sp13_S_contig860.20021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig860.20021.1
Unique NamemRNA_Ecto-sp13_S_contig860.20021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig860.20021.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 1732 bits (4486), Expect = 0.000e+0
Identity = 1080/1193 (90.53%), Postives = 1103/1193 (92.46%), Query Frame = 1 
Query:    1 MAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEVLGEEAQGRDRPVERWHQ----------PGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GSDPRAGAPGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYLPPSLNPGASPVPNSSSAAANIQPAKSSASGPGGASPVXXXLXXXXXXXXARTDERASALGQHRLPAIDFTGAAKRDAVARAREDGRRGVVKPSSWRQPSPETGGLTPTAAEGGXXXXXXXXXXXXXXXXVSGELEEADAVDSGEXXXXXXXXXXXXXDFLALPTERTENTGGDSGEASSETXXXXXXXTAPEQASPAALAKAFALAASGALASDGRSNVVRGAGGSGVGREERYYLEGGDGKTQGAASAALPDDQLSELEAQLNEGTSCDVEGWLLLAMHRLPRTGGSAKAVLNTISASDVACGASGPMGSVDQAAIKSALRTFVRPLERAEGGHAEVLWLLYLRVFDFLPGKSEDALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSLSEDVSCYRRQIEALLLLQPRAVDMRASPQDSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEANVKMILYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDARDGQGRRTLLRTREGGGHARKGEGKGARREEGGAKAGGSTEAGDDDGQRLPAGVAAALKRAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGGGLADLLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGCWAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRNEQSVNLVPQPSGERIQAVYAFLRFVESRLEAARSESESANDAGRGALEDARRVLRDALVGMWTGGXXXXXXXXXXXXXXXXXRSDSDRWLEEEGGESVRRALEGAKASLFRWADGGSGGCDAPGGNGERQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAMILSTQQQQKQQ 3543
            MAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFE+LGEE+QGRDRPVERWHQ          PGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G +PRA APGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYLPP LNPG S  P S+SAAAN+QPAKSSASGPG  SPV   L        ARTDERASALGQHRLPAIDFTGAAKRDAVARARE+GRRGVVKPSS RQP+ ETGG+TPTAAEGG    XXXXXXXXXXXX  GELEEADAVDSGEXXXXXXXXXXXXX FLALPTER EN GGD GEASS T        APEQASPAALAKAFALAASGALAS GR NVVRGAGGSGVGREERYYLEGGDGKTQGAASAALPDDQLS LEA+LNEG SCDVEGWLLLAMH+LPR GGSAKAVLNTIS  DVACGASGPMGSVDQAA+KSALRTFVRPLERA+G  AEVLWLLYLR+F FLPGKS+DALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSL EDVSCYRRQIEALLLLQPRA DMRASPQD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEA VKMI+YLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDARDGQGRRTLLRT EGGGH R+GEG GA R  GGA AGGSTEA DD+GQRLPAGVAAALK APRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGG LA LLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGCWAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRR+EQSVNLVP PSGERIQAVYAFLRFVESRLEAARSESESANDA RGALEDARRVLRDALVGMWTG    XXXXXXXXXXXXX RS+S RWLEEEGGESVR+ALEGAKASLFRWADGGSGGCDAPGGNGERQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAA+ILSTQQ++KQQ
Sbjct:   66 MAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEMLGEESQGRDRPVERWHQVGASIRRRLVPGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEPRAEAPGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYLPP-LNPGTSSAPISASAAANVQPAKSSASGPGSTSPVPGPLAAAA----ARTDERASALGQHRLPAIDFTGAAKRDAVARARENGRRGVVKPSSSRQPTSETGGVTPTAAEGGTADQXXXXXXXXXXXX--GELEEADAVDSGEXXXXXXXXXXXXX-FLALPTERAENNGGDGGEASSGTA------AAPEQASPAALAKAFALAASGALASGGRGNVVRGAGGSGVGREERYYLEGGDGKTQGAASAALPDDQLSALEAKLNEGASCDVEGWLLLAMHQLPRAGGSAKAVLNTIS--DVACGASGPMGSVDQAAVKSALRTFVRPLERADGAQAEVLWLLYLRLFAFLPGKSDDALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSLPEDVSCYRRQIEALLLLQPRAADMRASPQDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEVKMIVYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDARDGQGRRTLLRTFEGGGHEREGEGNGATRXXGGANAGGSTEASDDNGQRLPAGVAAALKHAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGGDLAALLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGCWAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRDEQSVNLVPPPSGERIQAVYAFLRFVESRLEAARSESESANDADRGALEDARRVLRDALVGMWTG-VSSXXXXXXXXXXXXXARSESYRWLEEEGGESVRQALEGAKASLFRWADGGSGGCDAPGGNGERQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAIILSTQQRRKQQ 1241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig860.20021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE0.000e+090.53C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig860contigEcto-sp13_S_contig860:180..6300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1722.2
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LUC8
Preferred nameCol2a1
Model size3543
KEGG koko:K15502,ko:K19721
KEGG Pathwayko04974,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0001894,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006469,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008037,GO:0008038,GO:0008039,GO:0008150,GO:0008285,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016020,GO:0016021,GO:0019207,GO:0019210,GO:0019220,GO:0019221,GO:0019222,GO:0019887,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030100,GO:0030154,GO:0030182,GO:0030234,GO:0031224,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0033673,GO:0034097,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042592,GO:0043086,GO:0043549,GO:0044092,GO:0044424,GO:0044425,GO:0044464,GO:0045807,GO:0045859,GO:0045936,GO:0046425,GO:0046426,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051716,GO:0060249,GO:0060255,GO:0060438,GO:0060541,GO:0060627,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:0072091,GO:0080090,GO:0098772,GO:1902531,GO:1902532,GO:1904892,GO:1904893,GO:2000647
Exons8
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_004490.1
Cds size3543
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01009,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig860.20021.1prot_Ecto-sp13_S_contig860.20021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig860 180..6300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.3579967-CDS-Ecto-sp13_S_contig860:179..15021681464132.3579967-CDS-Ecto-sp13_S_contig860:179..1502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 180..1502 -
1681464132.3810794-CDS-Ecto-sp13_S_contig860:1853..24451681464132.3810794-CDS-Ecto-sp13_S_contig860:1853..2445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 1854..2445 -
1681464132.3942642-CDS-Ecto-sp13_S_contig860:2939..31391681464132.3942642-CDS-Ecto-sp13_S_contig860:2939..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 2940..3139 -
1681464132.4054718-CDS-Ecto-sp13_S_contig860:3747..38791681464132.4054718-CDS-Ecto-sp13_S_contig860:3747..3879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 3748..3879 -
1681464132.4167511-CDS-Ecto-sp13_S_contig860:4075..43121681464132.4167511-CDS-Ecto-sp13_S_contig860:4075..4312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 4076..4312 -
1681464132.429467-CDS-Ecto-sp13_S_contig860:4580..51331681464132.429467-CDS-Ecto-sp13_S_contig860:4580..5133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 4581..5133 -
1681464132.4393554-CDS-Ecto-sp13_S_contig860:5482..58381681464132.4393554-CDS-Ecto-sp13_S_contig860:5482..5838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 5483..5838 -
1681464132.4526339-CDS-Ecto-sp13_S_contig860:6150..63001681464132.4526339-CDS-Ecto-sp13_S_contig860:6150..6300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 6151..6300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig860.20021.1

>prot_Ecto-sp13_S_contig860.20021.1 ID=prot_Ecto-sp13_S_contig860.20021.1|Name=mRNA_Ecto-sp13_S_contig860.20021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1181bp
MAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEVLGEEAQGRDRPVERWHQ
PGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSAATATGGGRTSG
AATTAPPSGGTKRKGRDDAVNSPGTAAAAAAAGSDPRAGAPGAKRRRVDA
NAIMCPFELNGVCNDDDCRYQHLDVYLPPSLNPGASPVPNSSSAAANIQP
AKSSASGPGGASPVPGPLASAAAAAAARTDERASALGQHRLPAIDFTGAA
KRDAVARAREDGRRGVVKPSSWRQPSPETGGLTPTAAEGGAADQAGGGGG
GGGGGNVSGELEEADAVDSGEETTSVGGEEEEEEDFLALPTERTENTGGD
SGEASSETASAAAAATAPEQASPAALAKAFALAASGALASDGRSNVVRGA
GGSGVGREERYYLEGGDGKTQGAASAALPDDQLSELEAQLNEGTSCDVEG
WLLLAMHRLPRTGGSAKAVLNTISASDVACGASGPMGSVDQAAIKSALRT
FVRPLERAEGGHAEVLWLLYLRVFDFLPGKSEDALGMAEYALEKFPTSRR
IWRLYHSMLQTSPGWSLSEDVSCYRRQIEALLLLQPRAVDMRASPQDSGS
GGGGGGPGAKATSSGSLGKNKSGNGGTGGTGGGDGGSGAEANVKMILYLV
LERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDARDGQGRRTLLRT
REGGGHARKGEGKGARREEGGAKAGGSTEAGDDDGQRLPAGVAAALKRAP
RDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGGGLAD
LLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQG
CWAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCL
RRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDT
YHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRNEQSVNLVPQP
SGERIQAVYAFLRFVESRLEAARSESESANDAGRGALEDARRVLRDALVG
MWTGGSSSSSAAASSAAGGGAARSDSDRWLEEEGGESVRRALEGAKASLF
RWADGGSGGCDAPGGNGERQLSTIVFSLWVLGGASAAIGSLDHILSAESF
SGVSAERKRLAWLQRLEAAMILSTQQQQKQQ
back to top

mRNA from alignment at Ecto-sp13_S_contig860:180..6300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig860.20021.1 ID=mRNA_Ecto-sp13_S_contig860.20021.1|Name=mRNA_Ecto-sp13_S_contig860.20021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6121bp|location=Sequence derived from alignment at Ecto-sp13_S_contig860:180..6300- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATTGGAGGGGGCATGGTTCCCGGCGGGGATGACTTGCTGACCCG
CGACGCGGGGACGATAGCGGAGTACATACGGCTGATGTCCTTCGAGGTGT
TGGGCGAGGAGGCGCAGGGGCGGGATCGTCCGGTGGAGCGGTGGCATCAG
GTGGGGGCATCGATTCGGCGTCGTCTTGAGGTGTTTGTTTTGACCGGATG
GAGCGTTGTCTCAATACAAGAAGCGTGTTGTGGCCTCTTGTTTTTTTCTG
GGCGGTGCTGGCTTTTGTCCGTCTTCCCCCCCGAAGTGTCTACGCCGCAT
CCAAAAACAGGCTGCTGCTCCGACCCCATTCTAATTATGGTGTACCATAA
AACGAGACCTCGAACCGGTCGCCCATGGTGAAGGAGGCGCGGAATGGTCC
CCACCTATGCTGTGCTGACACGGCTGCTCGGATGCCCGCACTTGTGTCAT
GCTAAAACTCAGCCCGGATTGTCGCTGACGGAGGCACTGGACAAGGCCGA
GGCGACCGCCGCGCGACCGGCTCGCCTGCCGAACCTGCTAGCCCTTGCCG
CGGCCATCCGCCCTGTCGACAGCAGTGCTGCTACAGCCACCGGCGGTGGC
CGTACAAGCGGGGCCGCCACTACTGCTCCCCCCTCGGGGGGAACGAAGCG
AAAAGGTAGGGATGATGCCGTGAACTCGCCTGGGACGGCAGCGGCGGCGG
CGGCTGCGGGCAGTGACCCGAGAGCGGGGGCGCCGGGCGCGAAACGGAGG
CGTGTGGACGCGAACGCTATCATGTGCCCCTTCGAGCTCAACGGGGTGTG
CAACGACGACGATTGCAGGTGGCCGTTGTAAACGTCTTGTGTTCTTCTTC
GGCAAACGGGGTAGAGTTGTTTTGGTTGTGCTGTGCGAGGTTTGGCTTGA
GTGAGGTGTCGCGTGTGCGTTTGGCGTGCGAGTCACGAACGCTGCCGTGC
GCGTCGTGTGTCTACCATTTGTTTTGTTCGTCCATGGCGAGGCACTTCCT
TGTTCGCTCCGGAGAGTTTTTCCTCGACGACTGGCACATACTGCTGTCCA
TCCTCGACGCAAGTCAAACGACGAAACGACCAAAAGGAATAAACTCCCCG
GTTACACCCAGACTACGACACCCATTGACACAAGCCGTGCCGCCGCCCGC
CGTCTCCTCTTGACCAGGTACCAGCACTTGGACGTCTACCTACCACCCTC
GTTAAACCCGGGTGCGTCCCCTGTCCCCAACTCTTCATCAGCAGCAGCAA
ATATCCAGCCGGCCAAATCCTCGGCATCAGGCCCCGGCGGTGCTTCGCCG
GTCCCGGGGCCGCTAGCGTCGGCGGCGGCGGCGGCGGCGGCGAGAACTGA
CGAGAGGGCTTCAGCGCTCGGGCAGCACCGGCTCCCCGCCATCGACTTCA
CGGGCGCGGCGAAGAGAGACGCCGTTGCCCGCGCTAGAGAAGACGGGCGG
CGGGGTGTTGTCAAACCCTCGTCGTGGAGGCAGCCATCTCCCGAGACCGG
GGGGTTGACGCCGACGGCGGCGGAAGGGGGTGCTGCCGATCAGGCAGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCAACGTCAGCGGGGAGTTGGAGGAA
GCAGACGCTGTCGACTCCGGGGAAGAGACGACAAGCGTGGGCGGGGAGGA
AGAAGAAGAAGAAGACTTCCTCGCACTCCCGACAGAGCGTACGGAAAACA
CCGGCGGCGACAGCGGCGAGGTGATAATTTTTTTTCCCGAGTGTGAAAAA
GAGGGGTGGATGTAGACAAGAGCAACAGCTGCGCGGGTCCTTGGCCCGTC
GACGAAACCTTGTCGTGTGTTTGTCGTTGGGAGAAGGTGGCACGTTGCGC
AGTCACTGCGCGTGCGGGAGCTTTGCGTGATGTCTTGTGTCGATGGTTAG
CCAGAAGAGGGGTCGAAGAGGCGTGCATGCACGGTCAATCTTGTCACAAT
ACCGCCGGCGTTTTTTTCCGTTTCTGTAACGACGGAAGGCATCCTCCGAG
ACCGCCTCCGCCGCCGCCGCCGCCACCGCTCCCGAGCAAGCGAGCCCCGC
GGCATTGGCAAAAGCTTTCGCTCTTGCCGCTTCGGGGGCTTTAGCCTCCG
ACGGCCGTAGCAACGTCGTGAGAGGGGCGGGGGGCTCCGGTGTCGGTCGA
GAGGAGCGGTACTACCTAGAGGGCGGAGACGGAAAGACCCAAGGTGCTGC
TTCGGCCGCTCTACCGGACGATCAGGTGTGTGGTGACTCGTTCGCGTATG
TGGGGTGACCGCCCTGCCCCAAGCTTTTTTTTGTTGCTCTCAAGTTGGGC
GTAGGCTTCCGTTAACGATATACGACGGTGGCCATGTCAAGCCGCAACGA
CCTCCTCAACGGCCGCCCTCACTCCGACCTACGGTATATTTCCCCTGTCG
GTGTGGCGTCCCGCTTCGCAGCTGAGTGAGCTGGAGGCCCAGCTCAATGA
AGGGACGAGCTGCGACGTGGAGGGCTGGTTGCTCCTCGCGATGCACCGGC
TCCCTCGTACCGGGGGCTCCGCGAAGGCGGTTCTGAACACGATCTCGGCG
AGTGTTACGTTAGCGTTGCACATATGATAGCATACTAGTGCATGCTGCGT
ACCACGCCCCACCCGCCGCCGCCGCCGCCTCCTCTGTCAAAGTGTCTTCC
TCCGTGCTTGCTCTGCTCTGGTTTGTGTTCGCGCTTCCCCCCCCCCCCCC
CCCCCCCCCCTTCTCTTGTCGCCCTCCTTCTGCGTGCGAGAACTCCATGT
TTTCGTCTTCGTCCACGCTGCAGGCGGCCGAGAAGTTTTGTTTTGTATGC
ATACAGTCACAGAAAGACTTGTTCCCGCTCGAGATAATGCCGTAGCAGTC
GAGATGATTTCCTTGGGACCACCTGCAGGGGAAACGAAAGAGAGGAACGC
CGCCGTCTGGGCGCTGTAGAGCGGTGATATTAGTGAACCGCGGCAAAGCG
CCAGAGTGGCATCCATCGCTGCGGTTTCCGAGACGGGGGTTGTGTAGCAG
CGCCTGTGCTCCCCGCAGCCACTTGTGGGTGGCCTGCTGCATTTTATCCT
ACCAAGCATCGCGTCGTTACTGTTTGTTTAGAAGGAGCAAGCATGAGGGC
AAGACCGTGCATGCACACTGACGAACAACAACAACGACAACAACAACAAC
AACAACAACAGGATGTTGCGTGCGGTGCGAGTGGGCCCATGGGAAGCGTC
GACCAAGCCGCAATAAAGTCTGCCCTGCGAACGTTCGTCCGGCCCCTGGA
GCGGGCGGAAGGGGGGCACGCAGAGGTGCTGTGGCTCTTGTACCTCAGGG
TATTTGATTTCCTTCCCGGGAAGAGCGAGGACGCTCTTGGCATGGCGGAA
TACGCCCTAGAGTGAGTGGAAGACATACACACATGGGAAAAGCTGTGTGT
TACACTTACCTACGGAGAACTGCAGCACTCTGGGACTCGGGGCGGGGGAA
CAAGGGCAACAATCTGCAATGAGAGAACACTTTTTTATTTTCAGTCATTG
GAACGACTGCCGCAGTTGAATTTGAACAGCAAGCGGCTAGCGACAGTGGT
CCTGTCGTTCTCGCGGAAACACGCATGTGTGCATTGTCCAAATGTCCATC
ATGTTGTCGGAACTCTCGTCATGTTTTCAATGCGTTGTATTGAAGGATAT
TGCACACAGCTATGTATGGTACGCCCGCATGCCTCACTTTGCCTCACAAC
ACGATGCGGGCTCTCGCTCTCTCAATCATCCCGGCAAAGGGTCGTTTTGT
CAGCCATGTGCTTGCGTTGTACCGCCTGCACGGGAGATTCGCGGAAAATA
CCAACGCTCTCCCCCCTCACGGGTGGCGCCCACACCTTGCTGCACTGCTG
CACAGGAAGTTCCCCACGTCGCGACGAATCTGGAGGCTCTACCACTCCAT
GTTGCAGACCTCTCCGGGGTGGAGCCTGTCGGAAGATGTGTCGTGTTACC
GTAGGCAGATAGAGGCGCTCCTACTCCTCCAGCCGCGGGCCGTAGATATG
CGGGCTTCACCACAAGACAGTGGCAGCGGCGGCGGCGGCGGCGGCCCCGG
TGCGAAGGCAACGAGTTCCGGATCGCTGGGCAAAAACAAGAGCGGCAACG
GTGGCACCGGTGGCACCGGCGGCGGCGACGGCGGCAGCGGCGCAGAGGCG
AATGTGAAGATGATTCTGTACCTAGTCCTCGAACGCTGCTCACTGTTGGC
GGAGGCCGGGTACAAGCTCCAAGCTGCCGCTGAGGTCCTCGACAGCCTCG
GGGCTCTCGCAGAGGGCCAGCCCCTGTGGGGATGGGACGCCAGGGACGGG
CAGGGGAGGAGGACGCTCCTGAGGACTCGCGAAGGCGGCGGCCACGCAAG
GAAAGGGGAGGGGAAGGGAGCTAGAAGAGAAGAAGGAGGAGCAAAGGCGG
GAGGTTCCACCGAAGCGGGCGACGACGATGGTCAGCGTTTACCGGCGGTG
AGCAACGGCCGCGCGACGTCGGCCATTTTTTGTTTTTTATTGCTGCTTTT
TCATGTGGTTGTGTGTCTGTCGTGTTGGTCGTGGCACCACGATAGGGTCG
TGTTCGTGTGTTTCTATTTGGAAATGTTTTTCTTTCGCCTTTTGACGAGG
GACCCAAGCTTCAGTCTGTGTCTCTTGCGGTGCGGGGTTCCCACAGCTTC
CATGTGGCTCCGAGTGCGACCTCTCCATTGATCTGGCTTGCGCCCCACCC
CCCCTCGCTCTCCGGCCGCCGTGATTGATGTTTGCTCGCACCCGCACACG
CTCAACCGGGCGGTATCCTTGTCATTTTCGTGGCTCCTGCCGGAACAGGG
TGTGGCGGCGGCGCTGAAACGCGCGCCGCGCGACTCGCGGTGCGTGCTGT
GGTTGACCGCGCTGCACCTTCTCGTCATGGGCGTGTTCCCCCGCCACGCG
CTCACGCTTGCCGAGAATGACGGCGGCGGCCTCGGCGGCAGCAACGATAC
CACCGCCGCAGGCGGTGGCCTTGCGGACTTGCTCCTGTGGCCCACGGAGT
GGCTGTCCCCCAAGAGCAGCGCGATCCTCCGGCTGTCGGCCAGCCCAGAC
CTGCAGGACGCGACCCTGAAGACGTTCATGACCGCCCTGTCCGACGTGGG
GCTGCTCCCCCCGCCGAGGAGCCAGGGTTGCTGGGCTCCCGCCATCAAGG
ACCGCGACGCCCTTCTGTCCAGCGCGGCCGAGGCAAAGGCCGCGCGGGCC
GGAGGCATGGCGCCGGACGCCTCTGCCCTGGAGGGACCCCCGCTCGTGCT
CGCGCTGAACTGGCTCGCGTTCTGCCTGCGGCGGGGCCGGGTGGACGCGA
GGCAGGGGCGTATGATGGCGTTCGCGTGCTGCCGGAGGTTCCAGCTCTCC
CGGCCCGACCAGCCGGCGCTGCTGGAGCACTTCCTGCTCGAGCACGCCGT
CTCCAAGACGAGGACCCTGGGCGACACCTACCACGAGATCTCCCGCGCGT
TCGACGCCGACGGGGTCGCCGCGGGAGCCTTGCGCGAGAGGCGGGATGGC
GAGGGCAAGAGCGCTAGCCTTAACCCTGCCGGCGCCAGACGCAGGAACGA
ACAGTCGGTGAACTTGGTGCCCCAGCCGTCGGGGGAACGGATCCAGGCGG
TGTACGCGTTCCTGCGGTTCGTCGAGTCGCGGCTGGAGGCCGCGCGGTCG
GAGTCGGAGTCGGCGAACGACGCCGGTCGAGGTGCGCTCGAGGACGCGCG
GCGCGTGCTGCGCGACGCTCTGGTGGGCATGTGGACGGGGGGGTCGTCGT
CGTCGTCGGCGGCGGCGTCGAGCGCTGCCGGCGGCGGCGCTGCCCGCTCG
GACTCCGACCGTTGGCTCGAAGAAGAGGGCGGGGAGTCGGTGCGGCGAGC
CCTCGAGGGCGCCAAGGCTTCTCTGTTTCGCTGGGCCGACGGCGGAAGTG
GTGGCTGCGATGCTCCCGGGGGAAATGGGGAACGTCAGCTATCAACGATC
GTCTTTTCCCTGTGGGTTCTGGGGGGCGCTTCTGCCGCGATTGGATCTCT
GGACCATATTCTCAGCGCTGAATCGTTTTCGGGCGTGTCGGCGGAGCGGA
AACGGCTTGCGTGGCTGCAGAGGCTAGAGGCTGCCATGATTCTGTCGACG
CAGCAGCAGCAGAAGCAGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig860:180..6300-

>mRNA_Ecto-sp13_S_contig860.20021.1 ID=mRNA_Ecto-sp13_S_contig860.20021.1|Name=mRNA_Ecto-sp13_S_contig860.20021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig860:180..6300- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATTGGAGGGGGCATGGTTCCCGGCGGGGATGACTTGCTGACCCG
CGACGCGGGGACGATAGCGGAGTACATACGGCTGATGTCCTTCGAGGTGT
TGGGCGAGGAGGCGCAGGGGCGGGATCGTCCGGTGGAGCGGTGGCATCAG
CCCGGATTGTCGCTGACGGAGGCACTGGACAAGGCCGAGGCGACCGCCGC
GCGACCGGCTCGCCTGCCGAACCTGCTAGCCCTTGCCGCGGCCATCCGCC
CTGTCGACAGCAGTGCTGCTACAGCCACCGGCGGTGGCCGTACAAGCGGG
GCCGCCACTACTGCTCCCCCCTCGGGGGGAACGAAGCGAAAAGGTAGGGA
TGATGCCGTGAACTCGCCTGGGACGGCAGCGGCGGCGGCGGCTGCGGGCA
GTGACCCGAGAGCGGGGGCGCCGGGCGCGAAACGGAGGCGTGTGGACGCG
AACGCTATCATGTGCCCCTTCGAGCTCAACGGGGTGTGCAACGACGACGA
TTGCAGGTACCAGCACTTGGACGTCTACCTACCACCCTCGTTAAACCCGG
GTGCGTCCCCTGTCCCCAACTCTTCATCAGCAGCAGCAAATATCCAGCCG
GCCAAATCCTCGGCATCAGGCCCCGGCGGTGCTTCGCCGGTCCCGGGGCC
GCTAGCGTCGGCGGCGGCGGCGGCGGCGGCGAGAACTGACGAGAGGGCTT
CAGCGCTCGGGCAGCACCGGCTCCCCGCCATCGACTTCACGGGCGCGGCG
AAGAGAGACGCCGTTGCCCGCGCTAGAGAAGACGGGCGGCGGGGTGTTGT
CAAACCCTCGTCGTGGAGGCAGCCATCTCCCGAGACCGGGGGGTTGACGC
CGACGGCGGCGGAAGGGGGTGCTGCCGATCAGGCAGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCAACGTCAGCGGGGAGTTGGAGGAAGCAGACGCTGT
CGACTCCGGGGAAGAGACGACAAGCGTGGGCGGGGAGGAAGAAGAAGAAG
AAGACTTCCTCGCACTCCCGACAGAGCGTACGGAAAACACCGGCGGCGAC
AGCGGCGAGGCATCCTCCGAGACCGCCTCCGCCGCCGCCGCCGCCACCGC
TCCCGAGCAAGCGAGCCCCGCGGCATTGGCAAAAGCTTTCGCTCTTGCCG
CTTCGGGGGCTTTAGCCTCCGACGGCCGTAGCAACGTCGTGAGAGGGGCG
GGGGGCTCCGGTGTCGGTCGAGAGGAGCGGTACTACCTAGAGGGCGGAGA
CGGAAAGACCCAAGGTGCTGCTTCGGCCGCTCTACCGGACGATCAGCTGA
GTGAGCTGGAGGCCCAGCTCAATGAAGGGACGAGCTGCGACGTGGAGGGC
TGGTTGCTCCTCGCGATGCACCGGCTCCCTCGTACCGGGGGCTCCGCGAA
GGCGGTTCTGAACACGATCTCGGCGAGTGATGTTGCGTGCGGTGCGAGTG
GGCCCATGGGAAGCGTCGACCAAGCCGCAATAAAGTCTGCCCTGCGAACG
TTCGTCCGGCCCCTGGAGCGGGCGGAAGGGGGGCACGCAGAGGTGCTGTG
GCTCTTGTACCTCAGGGTATTTGATTTCCTTCCCGGGAAGAGCGAGGACG
CTCTTGGCATGGCGGAATACGCCCTAGAGAAGTTCCCCACGTCGCGACGA
ATCTGGAGGCTCTACCACTCCATGTTGCAGACCTCTCCGGGGTGGAGCCT
GTCGGAAGATGTGTCGTGTTACCGTAGGCAGATAGAGGCGCTCCTACTCC
TCCAGCCGCGGGCCGTAGATATGCGGGCTTCACCACAAGACAGTGGCAGC
GGCGGCGGCGGCGGCGGCCCCGGTGCGAAGGCAACGAGTTCCGGATCGCT
GGGCAAAAACAAGAGCGGCAACGGTGGCACCGGTGGCACCGGCGGCGGCG
ACGGCGGCAGCGGCGCAGAGGCGAATGTGAAGATGATTCTGTACCTAGTC
CTCGAACGCTGCTCACTGTTGGCGGAGGCCGGGTACAAGCTCCAAGCTGC
CGCTGAGGTCCTCGACAGCCTCGGGGCTCTCGCAGAGGGCCAGCCCCTGT
GGGGATGGGACGCCAGGGACGGGCAGGGGAGGAGGACGCTCCTGAGGACT
CGCGAAGGCGGCGGCCACGCAAGGAAAGGGGAGGGGAAGGGAGCTAGAAG
AGAAGAAGGAGGAGCAAAGGCGGGAGGTTCCACCGAAGCGGGCGACGACG
ATGGTCAGCGTTTACCGGCGGGTGTGGCGGCGGCGCTGAAACGCGCGCCG
CGCGACTCGCGGTGCGTGCTGTGGTTGACCGCGCTGCACCTTCTCGTCAT
GGGCGTGTTCCCCCGCCACGCGCTCACGCTTGCCGAGAATGACGGCGGCG
GCCTCGGCGGCAGCAACGATACCACCGCCGCAGGCGGTGGCCTTGCGGAC
TTGCTCCTGTGGCCCACGGAGTGGCTGTCCCCCAAGAGCAGCGCGATCCT
CCGGCTGTCGGCCAGCCCAGACCTGCAGGACGCGACCCTGAAGACGTTCA
TGACCGCCCTGTCCGACGTGGGGCTGCTCCCCCCGCCGAGGAGCCAGGGT
TGCTGGGCTCCCGCCATCAAGGACCGCGACGCCCTTCTGTCCAGCGCGGC
CGAGGCAAAGGCCGCGCGGGCCGGAGGCATGGCGCCGGACGCCTCTGCCC
TGGAGGGACCCCCGCTCGTGCTCGCGCTGAACTGGCTCGCGTTCTGCCTG
CGGCGGGGCCGGGTGGACGCGAGGCAGGGGCGTATGATGGCGTTCGCGTG
CTGCCGGAGGTTCCAGCTCTCCCGGCCCGACCAGCCGGCGCTGCTGGAGC
ACTTCCTGCTCGAGCACGCCGTCTCCAAGACGAGGACCCTGGGCGACACC
TACCACGAGATCTCCCGCGCGTTCGACGCCGACGGGGTCGCCGCGGGAGC
CTTGCGCGAGAGGCGGGATGGCGAGGGCAAGAGCGCTAGCCTTAACCCTG
CCGGCGCCAGACGCAGGAACGAACAGTCGGTGAACTTGGTGCCCCAGCCG
TCGGGGGAACGGATCCAGGCGGTGTACGCGTTCCTGCGGTTCGTCGAGTC
GCGGCTGGAGGCCGCGCGGTCGGAGTCGGAGTCGGCGAACGACGCCGGTC
GAGGTGCGCTCGAGGACGCGCGGCGCGTGCTGCGCGACGCTCTGGTGGGC
ATGTGGACGGGGGGGTCGTCGTCGTCGTCGGCGGCGGCGTCGAGCGCTGC
CGGCGGCGGCGCTGCCCGCTCGGACTCCGACCGTTGGCTCGAAGAAGAGG
GCGGGGAGTCGGTGCGGCGAGCCCTCGAGGGCGCCAAGGCTTCTCTGTTT
CGCTGGGCCGACGGCGGAAGTGGTGGCTGCGATGCTCCCGGGGGAAATGG
GGAACGTCAGCTATCAACGATCGTCTTTTCCCTGTGGGTTCTGGGGGGCG
CTTCTGCCGCGATTGGATCTCTGGACCATATTCTCAGCGCTGAATCGTTT
TCGGGCGTGTCGGCGGAGCGGAAACGGCTTGCGTGGCTGCAGAGGCTAGA
GGCTGCCATGATTCTGTCGACGCAGCAGCAGCAGAAGCAGCAG
back to top