mRNA_Ecto-sp13_S_contig860.20022.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig860.20022.1
Unique NamemRNA_Ecto-sp13_S_contig860.20022.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig860.20022.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.400e-7
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  742 ITKSTVAVSKAAVHTTLSAPSKSGGGVSVPRRLATSPRTG 861
            +TKSTVAV+KAAV TTLSAP+KSG GVSVPRRLATSPRTG
Sbjct:    1 MTKSTVAVTKAAVPTTLSAPTKSGSGVSVPRRLATSPRTG 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig860.20022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE8.400e-787.50C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig860contigEcto-sp13_S_contig860:6405..10198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size864
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_004490.2
Cds size861
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.2846107-CDS-Ecto-sp13_S_contig860:6405..65641681464132.2846107-CDS-Ecto-sp13_S_contig860:6405..6564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 6406..6564 -
1681464132.2958388-CDS-Ecto-sp13_S_contig860:6995..72441681464132.2958388-CDS-Ecto-sp13_S_contig860:6995..7244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 6996..7244 -
1681464132.306848-CDS-Ecto-sp13_S_contig860:7943..80681681464132.306848-CDS-Ecto-sp13_S_contig860:7943..8068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 7944..8068 -
1681464132.3171015-CDS-Ecto-sp13_S_contig860:8664..87381681464132.3171015-CDS-Ecto-sp13_S_contig860:8664..8738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 8665..8738 -
1681464132.3264074-CDS-Ecto-sp13_S_contig860:9944..101981681464132.3264074-CDS-Ecto-sp13_S_contig860:9944..10198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig860 9945..10198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig860.20022.1prot_Ecto-sp13_S_contig860.20022.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig860 6406..10198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig860.20022.1

>prot_Ecto-sp13_S_contig860.20022.1 ID=prot_Ecto-sp13_S_contig860.20022.1|Name=mRNA_Ecto-sp13_S_contig860.20022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
GDIEGRVVSCTTRIAKNMAQPWHVSRGRARGRGSSKQWPGRGPHRANVWT
PSTATATTTTAAAAGAASATVVSASSPPALTARTSARKAADLVEAASTQS
ASEIEAHLKEAEERLAIAVAQEAEVRAIADEHLEREAYLTKLLQDLYRHQ
REEQQGGTSSSPQDGPAVLTANADPIIDLVSTASTSGGSSSGKAPAAPTP
VAPAVAVTRDLAIRDAAPAVAATRCLAVQDAPAQALPEPDPAAVPPPITK
STVAVSKAAVHTTLSAPSKSGGGVSVPRRLATSPRTG
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mRNA from alignment at Ecto-sp13_S_contig860:6405..10198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig860.20022.1 ID=mRNA_Ecto-sp13_S_contig860.20022.1|Name=mRNA_Ecto-sp13_S_contig860.20022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig860:6405..10198- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGATATAGAAGGAAGAGTGGTCTCGTGTACCACACGCATCGCCAAAAA
CATGGCGCAGCCGTGGCATGTAAGCCGTGGACGAGCAAGAGGGAGGGGTA
GCTCCAAACAATGGCCTGGTCGTGGGCCTCATCGAGCCAATGTCTGGACT
CCCTCGACAGCAACAGCAACAACGACTACAGCAGCAGCAGCTGGAGCGGC
TTCGGCAACGGTGGTCTCCGCTTCGTCCCCACCCGCTCTAACAGCTCGAA
CAAGGTGAAGGACATGCTTTGGTTCACGTTGATTGTGTATCACCCGCAGT
CGTAGCGTTGTCCAGCAGGCGGACTGCCGTGTTTGGTGCGGCAATGCAGC
ATGTGACACAACTAGGAGATCATGGAGATCGTCTGCCTGCTGCGCCCATG
GGTGTTTCATGTGAGCCCTGTCTACGAGGTGCTGCTGCTGCTGTGATCGA
AAGCGGTAGATCGGTGACGTTGGTACATTGGTTGGCGCATATGCTTCTGC
TGTTGGGCGTATGACACTCATCTGCTGAGCTCTGTCGAATCGGACCCCAA
TTACTAGTCAAGTCTAGAGTCGGTGACACGGGCAAACTTTGAACTTTTGA
AATTCGCGCATGGCGACGACCAACAACACGAAGAGACAGGGGATGAAAAG
TACGGCTTTAAGACAAGCCACCTGCACGAGGCTCGGCCTCACTGATGAGA
AGCACAGCGTGCTGACAGAGGTTTTCCCTGTGGGCAAAATTCCCAATTGA
TTGCGTGGACATTGGACAGCGACGGCACTACACCATTTGTACGTATCAGT
CTGCACGTCCCCAAGTGTTGCGGTGTAGTCCACACTGTACCAGCCTCTCG
GTGGGCTTATCAGAGCACAGCAGTGTCATCCAGGCGTGGTGTAAGATGAA
AATCAGAACAGGTACTGCAGCAAGACCAGCCTACAGGTGGCTACCAACTG
CCAGTTGTGACGTTTCTCAAACTCAACAGCTGACACAGCCGAAGTGTGTT
TTGACTCGATACAGCCTAACGAACGTCATCGAACCAACATTTGAAATTTG
AATTTTGCCAATTCTGTATGCATTTCTACCAAGTATTGACTGCTGTCGGC
AACACGCCACCTTTACAGAAACAGACGTCGAACTACAGATTAACACGCCC
TCGGTATGTAGAGCACCCGTTGTGCCTGGAGAGAAACGAGTCTTGATAAT
GCTTCGCCGACGTACCGCGCCTCGATGCGCATCCTGCCGTCTATTTCCTC
TAGATGCGAGGGATACTTTTACTGTTTACCTCGAAGTTGTTTTCTTGTAC
TAAAAAAACAACAAATGTATGCTCGGAAACAACTTGCACTGCAGTAGGGC
AAATCAATGTGGCCAAGGAACCCGCGAATCCAAGAAGCTAGGGACGTGTG
TTTGTGATGGTTTGGCTTCAACATTTTTTTTTTCACCATGCCGCAACACG
ACGGCGGCAGCGCTCGCAAGGCAGCGGACCTCGTGGAAGCCGCGTCCACC
CAGTCGGCGTCCGAGATCGAAGCCCACCTGAAAGGTGCGCAACTTTTTGC
TACAGCACACTCTAACAAAGCGGAAGGAAAATCTGCCTTTTTGAGACAGG
CCGTGCGTGATGACAGCCGCCGTAAGCGTTCTTACGCAGCGCGAGGTTTT
CAACGAGAAGGTCTGCCGGCGCTTCTCTGCGGTCGTCAGCTTGCCCCCGT
GCGTCATCTTGTGGGGTCTAATACTTGACGAGATGGCCTGTACTACCGGC
AGGGTGCTGTTGCGTACCTGAAAAGCATGAAAACAATATTACGAACTCAC
GTGTCGTTGGGTTCTCCAAGGCCCTGGCGTGTATTGCTCAACCGCGCCCC
CCCCATGGCCAAGCGCCCAGCCGTGGACCGAACACGTAGACAAAGCGAGG
AGCCCTCTCTCGCATGTTTCCATTCCCCCACGCCGACGGTCGGTGTAGTT
TTCCGTTAGTGTCGAATTCCGCCCGTTCATCATCATCACGCCGAAGAACA
CACGCGAATCGTCTACGGGTTGCAACCTACTTACGCAAAAAAGCATCCAT
CAATTTTCTTTGTTCTCTGGTCCGACCTGGGGGGGGGGGGGGTCAAACGA
ACGGATGGACCACTTTGGCCGTGCTCACAGAGGCAGAAGAACGATTGGCG
ATCGCCGTGGCTCAGGAGGCAGAGGTACGGGCTATCGCGGACGAACACCT
AGAGAGGGAGGCGTATCTGACGAAGCTCCTCCAAGATCTCTACCGGCATC
AGAGAGTGAGTGTGCTTCCGAGGTTGTGCTTGTACGGGACAAGTAGTACT
TTTTGACGACAACGAGGCAGGCCGCCTCCGTCTAGAACGCCTACGCGCCG
TTTGTTTGCACTTTTTTTCTCCATGGAGAACGGTAGCTGTGGCAACCACG
AGATATCGCGTCGCTTGGGGGTAAGTGTTTCGCCTGAACAGCTTGGTTTC
GAGATCACGACGACACACACCGCTGCTCCTGCTGCTGCTCGGTTTGGTAT
TACTGTTTTGATGGGGCACTAGTCGGCTAATTTTGAGGGACGGAGGGGGG
GTTATTGGCCCCACTTCTAGTATGTGAGAGTGGGTACCACGTTCATGCCG
GCACGCACCCGAATCAAACCAAACGTGCAGCCTGTATGTGCAAGTGCGGG
GTGAGGGGTTACCGTCCTTATTGAGGCTAAAAACGCTGCAAGGTTTTGGT
TTCTTCCAGTATATGCTTATGAGTAGACTCCATGAAAACATCATTAAGAA
CCGTCGACGTTCGGCATTCAAGCGCCCGATGTCGATCGCTCATGGATGTT
GCCCATCTGCTGAGGTGCATGTCGGGCTCCTCAGCCCGAATTCGCGAATG
AAAGCTTGCTTCGTTTTCTCGCCAGGCCTTGGTGCTCATTTCTCTGCGTG
CCTCTGTTCCATGTGTATGCGCTTGCACGCTCCGATTGTTTTCCCTCGCT
GTAGGAAGAGCAGCAAGGAGGCACATCGTCATCGCCACAAGATGGCCCTG
CGGTGCTTACAGCCAACGCCGACCCCATCATAGACTTGGTTAGCACAGCG
AGCACTAGCGGTGGTAGCTCAAGTGGAAAGGCACCGGCAGCACCAACGCC
AGTAGCACCAGCAGTAGCGGTAACACGCGATTTGGCGATCCGAGATGCAG
CACCAGCAGTAGCGGCAACGCGCTGTTTGGCGGTACAAGATGCACCCGCC
CAGGTACGTGACGTGTACTAACACGCGGTGCATGCATGCACGGACGGCGT
ACAAGTTTGTGACCCGCAATTTTTCCTACCCACGCTTCGTGGTTTAGAGA
AACGGGCTGCCTTGTAGTCTGGAGACATTGGAGCGTGAGGAACTCTCACT
CTCCGACAAAGTAGTTGGGCTATATCATGCCGCTGCTGCTGCTGTTGTAG
GTGCGTGTAGTAAGCCCAGATGGACTGTGGAGCACCGCCGGAGACGGTTT
ACTGCGCCTGGTGCCTGGTCGTTAAAGAAACGCTGCCTTCGGGAAAGTGC
GAGCTCCAGCCATAAGCTGCTGCAATACCGAGAACAAGCAATATTTGACG
TTTCAAGACTACGACTTTTTTTTTTAGCTCTCACAAATCTTGCCTATTGC
TGTGCCTATCATCCATCTGATTTTCCCTCGCCAGGCCTTGCCTGAACCTG
ACCCCGCCGCAGTGCCGCCGCCGATAACAAAGTCGACGGTTGCGGTGTCG
AAGGCGGCCGTGCATACCACCCTCTCGGCTCCCAGTAAGAGCGGTGGCGG
CGTTTCTGTCCCACGGCGGCTGGCAACTAGTCCGCGGACAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig860:6405..10198-

>mRNA_Ecto-sp13_S_contig860.20022.1 ID=mRNA_Ecto-sp13_S_contig860.20022.1|Name=mRNA_Ecto-sp13_S_contig860.20022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig860:6405..10198- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGATATAGAAGGAAGAGTGGTCTCGTGTACCACACGCATCGCCAAAAA
CATGGCGCAGCCGTGGCATGTAAGCCGTGGACGAGCAAGAGGGAGGGGTA
GCTCCAAACAATGGCCTGGTCGTGGGCCTCATCGAGCCAATGTCTGGACT
CCCTCGACAGCAACAGCAACAACGACTACAGCAGCAGCAGCTGGAGCGGC
TTCGGCAACGGTGGTCTCCGCTTCGTCCCCACCCGCTCTAACAGCTCGAA
CAAGCGCTCGCAAGGCAGCGGACCTCGTGGAAGCCGCGTCCACCCAGTCG
GCGTCCGAGATCGAAGCCCACCTGAAAGAGGCAGAAGAACGATTGGCGAT
CGCCGTGGCTCAGGAGGCAGAGGTACGGGCTATCGCGGACGAACACCTAG
AGAGGGAGGCGTATCTGACGAAGCTCCTCCAAGATCTCTACCGGCATCAG
AGAGAAGAGCAGCAAGGAGGCACATCGTCATCGCCACAAGATGGCCCTGC
GGTGCTTACAGCCAACGCCGACCCCATCATAGACTTGGTTAGCACAGCGA
GCACTAGCGGTGGTAGCTCAAGTGGAAAGGCACCGGCAGCACCAACGCCA
GTAGCACCAGCAGTAGCGGTAACACGCGATTTGGCGATCCGAGATGCAGC
ACCAGCAGTAGCGGCAACGCGCTGTTTGGCGGTACAAGATGCACCCGCCC
AGGCCTTGCCTGAACCTGACCCCGCCGCAGTGCCGCCGCCGATAACAAAG
TCGACGGTTGCGGTGTCGAAGGCGGCCGTGCATACCACCCTCTCGGCTCC
CAGTAAGAGCGGTGGCGGCGTTTCTGTCCCACGGCGGCTGGCAACTAGTC
CGCGGACAGGA
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