prot_Ecto-sp13_S_contig860.20022.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig860.20022.1
Unique Nameprot_Ecto-sp13_S_contig860.20022.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length287
Homology
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BLAST of mRNA_Ecto-sp13_S_contig860.20022.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.400e-7
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 
Query:  248 ITKSTVAVSKAAVHTTLSAPSKSGGGVSVPRRLATSPRTG 287
            +TKSTVAV+KAAV TTLSAP+KSG GVSVPRRLATSPRTG
Sbjct:    1 MTKSTVAVTKAAVPTTLSAPTKSGSGVSVPRRLATSPRTG 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig860.20022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE8.400e-787.50C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig860contigEcto-sp13_S_contig860:6406..10198 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig860.20022.1mRNA_Ecto-sp13_S_contig860.20022.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig860 6405..10198 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig860.20022.1 ID=prot_Ecto-sp13_S_contig860.20022.1|Name=mRNA_Ecto-sp13_S_contig860.20022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
GDIEGRVVSCTTRIAKNMAQPWHVSRGRARGRGSSKQWPGRGPHRANVWT
PSTATATTTTAAAAGAASATVVSASSPPALTARTSARKAADLVEAASTQS
ASEIEAHLKEAEERLAIAVAQEAEVRAIADEHLEREAYLTKLLQDLYRHQ
REEQQGGTSSSPQDGPAVLTANADPIIDLVSTASTSGGSSSGKAPAAPTP
VAPAVAVTRDLAIRDAAPAVAATRCLAVQDAPAQALPEPDPAAVPPPITK
STVAVSKAAVHTTLSAPSKSGGGVSVPRRLATSPRTG
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