mRNA_Ecto-sp13_S_contig86.20020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE) HSP 1 Score: 417 bits (1071), Expect = 1.550e-135 Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 1
Query: 4 TKQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVS 612
TKQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVL+FDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEK+MDKVRDSALRPLEGE WWK ADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV+
Sbjct: 692 TKQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKNMDKVRDSALRPLEGECWWKGADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVA 894
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A7S2HVI8_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVI8_9STRA) HSP 1 Score: 283 bits (723), Expect = 7.480e-89 Identity = 130/198 (65.66%), Postives = 152/198 (76.77%), Query Frame = 1
Query: 16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
N +HS RCD +K++IAQE RD+VIYFPYN+DFRGR YPIPPNLN LGSD RG+L F++ KPLGEKGL+WLKVHLANLYG DK +F+DR+ F HM +V DSA RPLEG WW A+SPWQ LAVC +LT AL P+P + S +PVH DGSCNGLQHYAALG D GGA VNL+P EPQDVY VC +V K+
Sbjct: 167 NCELHSQRCDTILKLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKVHLANLYGFDKANFNDRMQFTMDHMSEVYDSAARPLEGNRWWTKAESPWQVLAVCKELTEALSHPNPEAFESGMPVHMDGSCNGLQHYAALGRDVEGGASVNLTPHHEPQDVYMEVCAIVNHKI 364
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A7S2HVK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVK7_9STRA) HSP 1 Score: 283 bits (723), Expect = 1.160e-86 Identity = 130/198 (65.66%), Postives = 152/198 (76.77%), Query Frame = 1
Query: 16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
N +HS RCD +K++IAQE RD+VIYFPYN+DFRGR YPIPPNLN LGSD RG+L F++ KPLGEKGL+WLKVHLANLYG DK +F+DR+ F HM +V DSA RPLEG WW A+SPWQ LAVC +LT AL P+P + S +PVH DGSCNGLQHYAALG D GGA VNL+P EPQDVY VC +V K+
Sbjct: 425 NCELHSQRCDTILKLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKVHLANLYGFDKANFNDRMQFTMDHMSEVYDSAARPLEGNRWWTKAESPWQVLAVCKELTEALSHPNPEAFESGMPVHMDGSCNGLQHYAALGRDVEGGASVNLTPHHEPQDVYMEVCAIVNHKI 622
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: D8LUV8_BLAHO (DNA-directed RNA polymerase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LUV8_BLAHO) HSP 1 Score: 275 bits (704), Expect = 1.700e-86 Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 1
Query: 7 KQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
KQKN ++HSLRCD+ K+DIA+EF++ IYFP N+DFRGR YPIPP+LN LG+D RG+L F KPLGE+GL+WLK+ +ANLYG DK+SFDDR +V++H+ +R+S PL WWK+ D PWQ LA C + A+DSP P YLS +PVHQDGSCNGLQHYAALGLD GG QVNL PS +P DVYS V +VK+++
Sbjct: 135 KQKNYDLHSLRCDLGYKLDIAREFQNDTIYFPMNLDFRGRVYPIPPHLNHLGNDLCRGLLSFARKKPLGERGLFWLKIQVANLYGNDKISFDDRSKWVDEHLPAIRESVRNPLAPNAWWKEGDDPWQLLATCMEYIRAIDSPHPEAYLSNIPVHQDGSCNGLQHYAALGLDKTGGTQVNLVPSSKPGDVYSAVLRIVKERI 335
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA) HSP 1 Score: 284 bits (727), Expect = 4.450e-86 Identity = 131/203 (64.53%), Postives = 158/203 (77.83%), Query Frame = 1
Query: 7 KQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSS 615
K++NA + SLRCD +IK+ IA+EFR+H YFPYN+DFRGR YP+PPNLN LGSD RG+L F E +PLG+ GL WLK+HLANL G+DK+SFDDRVAFVE M+ V+DSA RPL G GWW+ A+ PWQ LAVC ++ AA++S DP +LS +PVH DGSCNGLQHYAALG D G QVNL S P+DVY+GVCD V K V S
Sbjct: 635 KKRNAELFSLRCDTEIKLSIAEEFRNHTFYFPYNLDFRGRAYPVPPNLNHLGSDMCRGMLRFAEKRPLGKNGLRWLKIHLANLCGQDKLSFDDRVAFVEGKMENVQDSAARPLNGHGWWQKAEEPWQALAVCKEIVAAVESGDPESFLSGVPVHMDGSCNGLQHYAALGRDEEGAKQVNLIHSAVPRDVYTGVCDRVIKHVHS 837
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: Q0QFS3_9MYCE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Liceales sp. orange ball TaxID=373140 RepID=Q0QFS3_9MYCE) HSP 1 Score: 267 bits (682), Expect = 1.430e-85 Identity = 122/201 (60.70%), Postives = 150/201 (74.63%), Query Frame = 1
Query: 7 KQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
+Q N ++HSL CD K+D+A + DH Y P+N+DFRGR YP+PP+LN LGSD RG+L+ D AKPLG +GL+WLKVHLANLYG DKV F+ RVAFV+K++D V D+ PL G WW AD PWQCLA C +LTAA+ S DP + SR+PVHQDGSCNGLQHYAALG D G +VNL PS PQDVY+GV +V K++
Sbjct: 7 RQLNNDLHSLWCDATYKLDVAAKMMDHTFYLPHNVDFRGRAYPLPPHLNQLGSDLCRGLLLLDTAKPLGPRGLWWLKVHLANLYGVDKVPFEARVAFVDKNIDNVMDAGDNPLGGRMWWLKADDPWQCLATCTELTAAIRSGDPENFKSRIPVHQDGSCNGLQHYAALGGDEIGARKVNLIPSDSPQDVYAGVATLVAKRI 207
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: Q0QFR1_ACACA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii TaxID=5755 RepID=Q0QFR1_ACACA) HSP 1 Score: 266 bits (679), Expect = 1.150e-83 Identity = 120/198 (60.61%), Postives = 148/198 (74.75%), Query Frame = 1
Query: 16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
N N+HSLRCD+ K+ +A+E +D Y+P+NMDFRGRTYPIPP+LN LG D RG+L F E KPLGE GL WLKVHLAN++G DK++F+DRV FVE +M+ + DSA PL G+ WW AD PWQCLA +L A +S P Y+S LP+HQDGSCNGLQHYAALG D G QVNL PS PQDVYSGV ++V +++
Sbjct: 63 NYNLHSLRCDVTYKLQVAKECQDRTFYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFAEGKPLGESGLRWLKVHLANVFGNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLKADKPWQCLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLLPSERPQDVYSGVVELVVRRL 260
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: UPI000644856E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644856E) HSP 1 Score: 273 bits (699), Expect = 4.340e-83 Identity = 125/198 (63.13%), Postives = 154/198 (77.78%), Query Frame = 1
Query: 16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
NAN+HSLRCD K+++A++ D+ YFP+N+DFRGR+YPIPP+LN +GSD R +L F EAKPLG +GL WL+V +AN+YG DKVSF+DR+AF E+HMD + DSA PL+G WW ADSPWQ LA C +LT AL SP P +LS LP+HQDG+CNGLQHYAALG D GG +VNL PSP+PQDVYSGV +V K V
Sbjct: 466 NANLHSLRCDTVYKLNVAKQLHDYKFYFPHNIDFRGRSYPIPPHLNHMGSDLCRSMLRFAEAKPLGARGLQWLRVQVANVYGVDKVSFEDRIAFTEEHMDDIFDSADNPLKGRKWWLKADSPWQTLAACIELTDALRSPKPEEFLSSLPIHQDGTCNGLQHYAALGGDEMGGLKVNLLPSPKPQDVYSGVAVMVSKLV 663
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A0C9TFI6_PAXIN (DNA-directed RNA polymerase (Fragment) n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9TFI6_PAXIN) HSP 1 Score: 263 bits (673), Expect = 9.630e-83 Identity = 123/204 (60.29%), Postives = 150/204 (73.53%), Query Frame = 1
Query: 10 QKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSSHV 621
Q AN HS RC + K++I++ F Y P+N+DFRGR YPIPP+LN +G D SRG+L+F EAKPLGE+GL WLK+HLANLYG DK SFD+RV FV K +D + DSA +PLEG WW AD PWQCLA C DL AAL+S DP +LS LPVHQDG+CNGLQHYAALG D G AQVNL+ + P DVY+ V ++V++ V V
Sbjct: 176 QDKANNHSERCSVNYKIEISRAFLGDAFYLPHNLDFRGRAYPIPPHLNHIGDDLSRGLLMFAEAKPLGERGLRWLKIHLANLYGFDKGSFDERVEFVMKRLDDIYDSAEKPLEGRRWWTTADDPWQCLATCMDLRAALESGDPHAHLSNLPVHQDGTCNGLQHYAALGGDGQGAAQVNLAVTDRPSDVYTFVANMVEEIVKRDV 379
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A2A9NPX3_9AGAR (DNA-directed RNA polymerase n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NPX3_9AGAR) HSP 1 Score: 275 bits (703), Expect = 4.930e-82 Identity = 126/204 (61.76%), Postives = 154/204 (75.49%), Query Frame = 1
Query: 10 QKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSSHV 621
Q+ AN HS RC + K++IA+ F Y P+N+DFRGR YPIPP+LN +G D SRG+L F EAKPLGE+GL WLK+HLANLYG DK +FD+RV FVEKHM+++ DSALRPL+G WW AD PWQCLA C +L AAL+S DP YLS +PVHQDG+CNGLQHYAALG D G QVNLS + P DVYS V ++V+K ++ V
Sbjct: 714 QRKANNHSDRCSVNYKIEIARAFLGDTFYLPHNLDFRGRAYPIPPHLNHIGDDLSRGLLTFAEAKPLGERGLRWLKIHLANLYGFDKANFDERVEFVEKHMEEIYDSALRPLDGNRWWSKADDPWQCLAACFELHAALESEDPHAYLSSIPVHQDGTCNGLQHYAALGGDQEGAKQVNLSTADRPSDVYSYVGNMVEKMIAEDV 917 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig86.20020.1 >prot_Ecto-sp13_S_contig86.20020.1 ID=prot_Ecto-sp13_S_contig86.20020.1|Name=mRNA_Ecto-sp13_S_contig86.20020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp MHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSback to top mRNA from alignment at Ecto-sp13_S_contig86:38967..41188- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig86.20020.1 ID=mRNA_Ecto-sp13_S_contig86.20020.1|Name=mRNA_Ecto-sp13_S_contig86.20020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:38967..41188- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86:38967..41188- >mRNA_Ecto-sp13_S_contig86.20020.1 ID=mRNA_Ecto-sp13_S_contig86.20020.1|Name=mRNA_Ecto-sp13_S_contig86.20020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:38967..41188- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |