mRNA_Ecto-sp13_S_contig86.20020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86.20020.1
Unique NamemRNA_Ecto-sp13_S_contig86.20020.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE)

HSP 1 Score: 417 bits (1071), Expect = 1.550e-135
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 1
Query:    4 TKQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVS 612
            TKQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVL+FDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEK+MDKVRDSALRPLEGE WWK ADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV+
Sbjct:  692 TKQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKNMDKVRDSALRPLEGECWWKGADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVA 894          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A7S2HVI8_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVI8_9STRA)

HSP 1 Score: 283 bits (723), Expect = 7.480e-89
Identity = 130/198 (65.66%), Postives = 152/198 (76.77%), Query Frame = 1
Query:   16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
            N  +HS RCD  +K++IAQE RD+VIYFPYN+DFRGR YPIPPNLN LGSD  RG+L F++ KPLGEKGL+WLKVHLANLYG DK +F+DR+ F   HM +V DSA RPLEG  WW  A+SPWQ LAVC +LT AL  P+P  + S +PVH DGSCNGLQHYAALG D  GGA VNL+P  EPQDVY  VC +V  K+
Sbjct:  167 NCELHSQRCDTILKLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKVHLANLYGFDKANFNDRMQFTMDHMSEVYDSAARPLEGNRWWTKAESPWQVLAVCKELTEALSHPNPEAFESGMPVHMDGSCNGLQHYAALGRDVEGGASVNLTPHHEPQDVYMEVCAIVNHKI 364          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A7S2HVK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVK7_9STRA)

HSP 1 Score: 283 bits (723), Expect = 1.160e-86
Identity = 130/198 (65.66%), Postives = 152/198 (76.77%), Query Frame = 1
Query:   16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
            N  +HS RCD  +K++IAQE RD+VIYFPYN+DFRGR YPIPPNLN LGSD  RG+L F++ KPLGEKGL+WLKVHLANLYG DK +F+DR+ F   HM +V DSA RPLEG  WW  A+SPWQ LAVC +LT AL  P+P  + S +PVH DGSCNGLQHYAALG D  GGA VNL+P  EPQDVY  VC +V  K+
Sbjct:  425 NCELHSQRCDTILKLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKVHLANLYGFDKANFNDRMQFTMDHMSEVYDSAARPLEGNRWWTKAESPWQVLAVCKELTEALSHPNPEAFESGMPVHMDGSCNGLQHYAALGRDVEGGASVNLTPHHEPQDVYMEVCAIVNHKI 622          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: D8LUV8_BLAHO (DNA-directed RNA polymerase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LUV8_BLAHO)

HSP 1 Score: 275 bits (704), Expect = 1.700e-86
Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 1
Query:    7 KQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
            KQKN ++HSLRCD+  K+DIA+EF++  IYFP N+DFRGR YPIPP+LN LG+D  RG+L F   KPLGE+GL+WLK+ +ANLYG DK+SFDDR  +V++H+  +R+S   PL    WWK+ D PWQ LA C +   A+DSP P  YLS +PVHQDGSCNGLQHYAALGLD  GG QVNL PS +P DVYS V  +VK+++
Sbjct:  135 KQKNYDLHSLRCDLGYKLDIAREFQNDTIYFPMNLDFRGRVYPIPPHLNHLGNDLCRGLLSFARKKPLGERGLFWLKIQVANLYGNDKISFDDRSKWVDEHLPAIRESVRNPLAPNAWWKEGDDPWQLLATCMEYIRAIDSPHPEAYLSNIPVHQDGSCNGLQHYAALGLDKTGGTQVNLVPSSKPGDVYSAVLRIVKERI 335          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA)

HSP 1 Score: 284 bits (727), Expect = 4.450e-86
Identity = 131/203 (64.53%), Postives = 158/203 (77.83%), Query Frame = 1
Query:    7 KQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSS 615
            K++NA + SLRCD +IK+ IA+EFR+H  YFPYN+DFRGR YP+PPNLN LGSD  RG+L F E +PLG+ GL WLK+HLANL G+DK+SFDDRVAFVE  M+ V+DSA RPL G GWW+ A+ PWQ LAVC ++ AA++S DP  +LS +PVH DGSCNGLQHYAALG D  G  QVNL  S  P+DVY+GVCD V K V S
Sbjct:  635 KKRNAELFSLRCDTEIKLSIAEEFRNHTFYFPYNLDFRGRAYPVPPNLNHLGSDMCRGMLRFAEKRPLGKNGLRWLKIHLANLCGQDKLSFDDRVAFVEGKMENVQDSAARPLNGHGWWQKAEEPWQALAVCKEIVAAVESGDPESFLSGVPVHMDGSCNGLQHYAALGRDEEGAKQVNLIHSAVPRDVYTGVCDRVIKHVHS 837          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: Q0QFS3_9MYCE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Liceales sp. orange ball TaxID=373140 RepID=Q0QFS3_9MYCE)

HSP 1 Score: 267 bits (682), Expect = 1.430e-85
Identity = 122/201 (60.70%), Postives = 150/201 (74.63%), Query Frame = 1
Query:    7 KQKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
            +Q N ++HSL CD   K+D+A +  DH  Y P+N+DFRGR YP+PP+LN LGSD  RG+L+ D AKPLG +GL+WLKVHLANLYG DKV F+ RVAFV+K++D V D+   PL G  WW  AD PWQCLA C +LTAA+ S DP  + SR+PVHQDGSCNGLQHYAALG D  G  +VNL PS  PQDVY+GV  +V K++
Sbjct:    7 RQLNNDLHSLWCDATYKLDVAAKMMDHTFYLPHNVDFRGRAYPLPPHLNQLGSDLCRGLLLLDTAKPLGPRGLWWLKVHLANLYGVDKVPFEARVAFVDKNIDNVMDAGDNPLGGRMWWLKADDPWQCLATCTELTAAIRSGDPENFKSRIPVHQDGSCNGLQHYAALGGDEIGARKVNLIPSDSPQDVYAGVATLVAKRI 207          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: Q0QFR1_ACACA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii TaxID=5755 RepID=Q0QFR1_ACACA)

HSP 1 Score: 266 bits (679), Expect = 1.150e-83
Identity = 120/198 (60.61%), Postives = 148/198 (74.75%), Query Frame = 1
Query:   16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
            N N+HSLRCD+  K+ +A+E +D   Y+P+NMDFRGRTYPIPP+LN LG D  RG+L F E KPLGE GL WLKVHLAN++G DK++F+DRV FVE +M+ + DSA  PL G+ WW  AD PWQCLA   +L  A +S  P  Y+S LP+HQDGSCNGLQHYAALG D  G  QVNL PS  PQDVYSGV ++V +++
Sbjct:   63 NYNLHSLRCDVTYKLQVAKECQDRTFYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFAEGKPLGESGLRWLKVHLANVFGNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLKADKPWQCLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLLPSERPQDVYSGVVELVVRRL 260          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: UPI000644856E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644856E)

HSP 1 Score: 273 bits (699), Expect = 4.340e-83
Identity = 125/198 (63.13%), Postives = 154/198 (77.78%), Query Frame = 1
Query:   16 NANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKV 609
            NAN+HSLRCD   K+++A++  D+  YFP+N+DFRGR+YPIPP+LN +GSD  R +L F EAKPLG +GL WL+V +AN+YG DKVSF+DR+AF E+HMD + DSA  PL+G  WW  ADSPWQ LA C +LT AL SP P  +LS LP+HQDG+CNGLQHYAALG D  GG +VNL PSP+PQDVYSGV  +V K V
Sbjct:  466 NANLHSLRCDTVYKLNVAKQLHDYKFYFPHNIDFRGRSYPIPPHLNHMGSDLCRSMLRFAEAKPLGARGLQWLRVQVANVYGVDKVSFEDRIAFTEEHMDDIFDSADNPLKGRKWWLKADSPWQTLAACIELTDALRSPKPEEFLSSLPIHQDGTCNGLQHYAALGGDEMGGLKVNLLPSPKPQDVYSGVAVMVSKLV 663          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A0C9TFI6_PAXIN (DNA-directed RNA polymerase (Fragment) n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9TFI6_PAXIN)

HSP 1 Score: 263 bits (673), Expect = 9.630e-83
Identity = 123/204 (60.29%), Postives = 150/204 (73.53%), Query Frame = 1
Query:   10 QKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSSHV 621
            Q  AN HS RC +  K++I++ F     Y P+N+DFRGR YPIPP+LN +G D SRG+L+F EAKPLGE+GL WLK+HLANLYG DK SFD+RV FV K +D + DSA +PLEG  WW  AD PWQCLA C DL AAL+S DP  +LS LPVHQDG+CNGLQHYAALG D  G AQVNL+ +  P DVY+ V ++V++ V   V
Sbjct:  176 QDKANNHSERCSVNYKIEISRAFLGDAFYLPHNLDFRGRAYPIPPHLNHIGDDLSRGLLMFAEAKPLGERGLRWLKIHLANLYGFDKGSFDERVEFVMKRLDDIYDSAEKPLEGRRWWTTADDPWQCLATCMDLRAALESGDPHAHLSNLPVHQDGTCNGLQHYAALGGDGQGAAQVNLAVTDRPSDVYTFVANMVEEIVKRDV 379          
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Match: A0A2A9NPX3_9AGAR (DNA-directed RNA polymerase n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NPX3_9AGAR)

HSP 1 Score: 275 bits (703), Expect = 4.930e-82
Identity = 126/204 (61.76%), Postives = 154/204 (75.49%), Query Frame = 1
Query:   10 QKNANMHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVRDSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSSHV 621
            Q+ AN HS RC +  K++IA+ F     Y P+N+DFRGR YPIPP+LN +G D SRG+L F EAKPLGE+GL WLK+HLANLYG DK +FD+RV FVEKHM+++ DSALRPL+G  WW  AD PWQCLA C +L AAL+S DP  YLS +PVHQDG+CNGLQHYAALG D  G  QVNLS +  P DVYS V ++V+K ++  V
Sbjct:  714 QRKANNHSDRCSVNYKIEIARAFLGDTFYLPHNLDFRGRAYPIPPHLNHIGDDLSRGLLTFAEAKPLGERGLRWLKIHLANLYGFDKANFDERVEFVEKHMEEIYDSALRPLDGNRWWSKADDPWQCLAACFELHAALESEDPHAYLSSIPVHQDGTCNGLQHYAALGGDQEGAKQVNLSTADRPSDVYSYVGNMVEKMIAEDV 917          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86.20020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU39_9PHAE1.550e-13597.54DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A7S2HVI8_9STRA7.480e-8965.66DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S2HVK7_9STRA1.160e-8665.66DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
D8LUV8_BLAHO1.700e-8660.70DNA-directed RNA polymerase n=1 Tax=Blastocystis h... [more]
A0A4D9D3J6_9STRA4.450e-8664.53DNA-directed RNA polymerase n=2 Tax=Monodopsidacea... [more]
Q0QFS3_9MYCE1.430e-8560.70DNA-directed RNA polymerase (Fragment) n=1 Tax=Lic... [more]
Q0QFR1_ACACA1.150e-8360.61DNA-directed RNA polymerase (Fragment) n=1 Tax=Aca... [more]
UPI000644856E4.340e-8363.13hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0C9TFI6_PAXIN9.630e-8360.29DNA-directed RNA polymerase (Fragment) n=1 Tax=Pax... [more]
A0A2A9NPX3_9AGAR4.930e-8261.76DNA-directed RNA polymerase n=1 Tax=Amanita thiers... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86contigEcto-sp13_S_contig86:38967..41188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score404.1
Seed ortholog evalue3.9e-110
Seed eggNOG ortholog2880.D7FQU5
Preferred namerpom-1
Model size624
KEGG koko:K00960,ko:K10908,ko:K11446
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000959,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034245,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons5
EggNOG free text desc.dna-directed rna polymerase
EggNOG OGsCOG5108@1,KOG1038@2759
EC2.7.7.6
Cds size600
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03029,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86.20020.1prot_Ecto-sp13_S_contig86.20020.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86 38967..41164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.1867142-CDS-Ecto-sp13_S_contig86:38966..391151681464132.1867142-CDS-Ecto-sp13_S_contig86:38966..39115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 38967..39115 -
1681464132.2006874-CDS-Ecto-sp13_S_contig86:39647..398041681464132.2006874-CDS-Ecto-sp13_S_contig86:39647..39804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 39648..39804 -
1681464132.2149763-CDS-Ecto-sp13_S_contig86:40113..401941681464132.2149763-CDS-Ecto-sp13_S_contig86:40113..40194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 40114..40194 -
1681464132.2243907-CDS-Ecto-sp13_S_contig86:40462..406421681464132.2243907-CDS-Ecto-sp13_S_contig86:40462..40642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 40463..40642 -
1681464132.2334838-CDS-Ecto-sp13_S_contig86:41131..411641681464132.2334838-CDS-Ecto-sp13_S_contig86:41131..41164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 41132..41164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.2449172-UTR-Ecto-sp13_S_contig86:41164..411881681464132.2449172-UTR-Ecto-sp13_S_contig86:41164..41188Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 41165..41188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86.20020.1

>prot_Ecto-sp13_S_contig86.20020.1 ID=prot_Ecto-sp13_S_contig86.20020.1|Name=mRNA_Ecto-sp13_S_contig86.20020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MHSLRCDMKIKVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFS
RGVLVFDEAKPLGEKGLYWLKVHLANLYGEDKVSFDDRVAFVEKHMDKVR
DSALRPLEGEGWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVHQD
GSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVSSHV*
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mRNA from alignment at Ecto-sp13_S_contig86:38967..41188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86.20020.1 ID=mRNA_Ecto-sp13_S_contig86.20020.1|Name=mRNA_Ecto-sp13_S_contig86.20020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:38967..41188- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACCAAGCAAAAGAACGCCAATATGCACTCCCTACGCTGCGACATGAA GATCAAGGTGAGAGAACAAAATTTTGCGTTCAAGCGAGAAGGGGAAAGGG CAAGGGTGGCTCAAAGAGATGCTTGTGGGTGAAGATATGGTCGGCATAGA CCATGTCCGCGACACCACGGGGCTAGACGTACCGTAGGGTATGGGCAAGT TCAAGTTCGTGTCCTCGGAGCCCCCTGCCGACATGACATGACCACCTCAG GCATGAACAACATTTAGGGTTTGGGGTCGCCTGGGCTTGACCGGATTGCG TGGCACCTCTCTCTCTTTCCCTGGTAAGTAGCCATGCCAACAGACGGACA GACCACCTCGCCGGCGATCGGCCTCGGCAGCTGTCGGGTCAACAATTAAC CCAATCAGCCCAACCCGTTTTTCTTTAATTTTCGTCAGCGCAACCTTGGC TCACCCACCCGCTTTTGTCTGTAGACCGAGAGCAAAAAAACACAACCTGT ACCATACCCCCCGCTTGTTTGTTGTGTGCAATCGTTTTTGTTGAAGGTGG ATATCGCACAGGAGTTCCGCGACCACGTGATCTACTTCCCGTACAACATG GACTTCCGGGGACGGACGTACCCCATACCCCCGAACCTGAACATCCTGGG GTCGGACTTTTCTCGAGGGGTCCTGGTGTTCGACGAGGCCAAACCGCTGG GGGAGAAGGGGCTCTACTGGCTCAAGGTAGATGAAGGAAGCCATCGAAAG ACCAAACATGTATGCGTATGCATTGGCTGCTTGTTTTTTCGGAGATCGCG GTCTGCTTCCTCTGGCCCCTGGGTGTCTTTCAGTGTTGGTCGTTGTTGTT GGGCTTGTGGTGATTCTTTCGAACCCCTTCCTATCGGCGATTTCGTGAAA CCTTGTCTTAACCTTCCGTTTGTAACTTTGTTTGTGGTGGTCTTGTGCCT GTCTACCTGTCTGCCTGTGTTGGGCTTGATTCAACCGCGTTCAGGTGCAT CTGGCGAACTTGTACGGAGAAGACAAGGTTTCCTTTGACGACCGCGTCGC TTTCGTCGAGAAGCATATGGACAAGGTTAGTGGCATGCATGTGTACGACC GAATCAGTGTCCACCAGTAATCCCAGCATACGTACATAATCGCAGCTTCT CCCTCGTCGTTGGAAGGGTTGGAAAATCGTCATTGTCACAAATGAATGTC GAAGCATATGCGGTAAAAACGACAATCCTGGTGAGAGGTGAGAGAAGAGA GCAAGATGACCCCTGAATCTACTAGACGGCGCCTGAATTTTTTCTTGCCC TTTTCTTTTTGGCGCGTCCTCCATCTACCCGTGCCCGACGTGTGTCGATG GTGGTGCTCTCGACGATGACGGCAACAACCACAGGTCCGAGATAGCGCCT TGCGGCCGCTGGAGGGCGAGGGCTGGTGGAAGGACGCGGACAGCCCCTGG CAGTGCCTCGCCGTGTGTGCCGACCTCACGGCTGCGCTCGACAGCCCAGA CCCCGCTCGGTACCTCTCGCGACTGCCCGTGCACCAGGACGGTGAGACGA GATACGGTGGAGGGGGCTAGGTAAAGATAAGCGGACGCCTCATGAAGACG CTTGACGCCATCTCGTTGTAGCTTTGACAGGAGTTAGCGTACTTTAGTGT GGTTCCGTTTGCAAATGAAAAGGCCGCGCACCTTTGTTTTAATGTAGGTG TAAGGAATCGTATCAGGTGGAGATTCGCTCCTCGTCCTGTTTTTAGCCAA CAGTCCAACGCTGTCGTGTCATTCGCTCGTTTCCCGCGCTCTCCTCAACC GTGGTGCTATATCCTTGGACCAGGACTTGGTGTTTGTTTGCCAGTGGACA GAAAGAAAAAAAATGTGCTTTTCGGATCAGACCAGAGCAAGTTTCAGCTG TACGTACGTACGGTGAACCAACCCACCAAGCAACATCTGTTCGGCGTTGC AATCGACGTCCAATACGACACCCACCGCGCAGACTCATGTGCTGTGTAGT GTATGCATAACACCAAACGCCCATTCGTTCGTTGGTGCTGCTCCGTTTGT TTTGGGCTGGTTTCCTATCTCAGGTTCGTGCAACGGGCTCCAGCACTACG CGGCGTTGGGGTTGGATGCAAATGGCGGGGCTCAGGTGAACCTTTCCCCT TCCCCCGAGCCTCAGGACGTGTACAGCGGTGTGTGTGACGTCGTCAAGAA GAAGGTCAGTAGCCACGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86:38967..41188-

>mRNA_Ecto-sp13_S_contig86.20020.1 ID=mRNA_Ecto-sp13_S_contig86.20020.1|Name=mRNA_Ecto-sp13_S_contig86.20020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:38967..41188- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCCCTACGCTGCGACATGAAGATCAAGGTGGATATCGCACAGGA
GTTCCGCGACCACGTGATCTACTTCCCGTACAACATGGACTTCCGGGGAC
GGACGTACCCCATACCCCCGAACCTGAACATCCTGGGGTCGGACTTTTCT
CGAGGGGTCCTGGTGTTCGACGAGGCCAAACCGCTGGGGGAGAAGGGGCT
CTACTGGCTCAAGGTGCATCTGGCGAACTTGTACGGAGAAGACAAGGTTT
CCTTTGACGACCGCGTCGCTTTCGTCGAGAAGCATATGGACAAGGTCCGA
GATAGCGCCTTGCGGCCGCTGGAGGGCGAGGGCTGGTGGAAGGACGCGGA
CAGCCCCTGGCAGTGCCTCGCCGTGTGTGCCGACCTCACGGCTGCGCTCG
ACAGCCCAGACCCCGCTCGGTACCTCTCGCGACTGCCCGTGCACCAGGAC
GGTTCGTGCAACGGGCTCCAGCACTACGCGGCGTTGGGGTTGGATGCAAA
TGGCGGGGCTCAGGTGAACCTTTCCCCTTCCCCCGAGCCTCAGGACGTGT
ACAGCGGTGTGTGTGACGTCGTCAAGAAGAAGGTCAGTAGCCACGTTTGA
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