mRNA_Ecto-sp13_S_contig86.20018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86.20018.1
Unique NamemRNA_Ecto-sp13_S_contig86.20018.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86.20018.1 vs. uniprot
Match: A0A6H5JTH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH5_9PHAE)

HSP 1 Score: 674 bits (1739), Expect = 3.880e-241
Identity = 351/369 (95.12%), Postives = 354/369 (95.93%), Query Frame = 1 
Query:    1 NRADAFVVAPPSHGATWRFSRQNHEQHRQQQQQISVTAVRGCSVGGSLARVVPRLKRRMSTAMNTNDGARWAPIPNVPNMKGGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELVEEEESGTAPPP 1107
            NRADAFVVAPPSHGA WR SRQN          +SVTAVR CSVG SLARVVPRLKRRMSTAMNTNDGARWAPIPNVPNM+GGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLA RSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPD+KSSRELVEEEESGTAPPP
Sbjct:   17 NRADAFVVAPPSHGAKWRSSRQNXXXXXXXXX-LSVTAVRRCSVGSSLARVVPRLKRRMSTAMNTNDGARWAPIPNVPNMEGGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLATRSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDTKSSRELVEEEESGTAPPP 384
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BLAST of mRNA_Ecto-sp13_S_contig86.20018.1 vs. uniprot
Match: D7FQU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU3_ECTSI)

HSP 1 Score: 554 bits (1428), Expect = 2.380e-195
Identity = 287/290 (98.97%), Postives = 288/290 (99.31%), Query Frame = 1 
Query:  238 MKGGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELVEEEESGTAPPP 1107
            MKGG +PEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQ AYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELVEEEESGTAPPP
Sbjct:    1 MKGGADPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELVEEEESGTAPPP 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86.20018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTH5_9PHAE3.880e-24195.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQU3_ECTSI2.380e-19598.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86contigEcto-sp13_S_contig86:21591..26047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score559.3
Seed ortholog evalue1.1e-156
Seed eggNOG ortholog2880.D7FQU3
Model size1538
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-16_000740.1
Cds size936
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86.20018.1prot_Ecto-sp13_S_contig86.20018.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86 22019..25873 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.8545864-UTR-Ecto-sp13_S_contig86:21590..220181681464131.8545864-UTR-Ecto-sp13_S_contig86:21590..22018Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 21591..22018 -
1681464131.9464283-UTR-Ecto-sp13_S_contig86:25873..260471681464131.9464283-UTR-Ecto-sp13_S_contig86:25873..26047Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 25874..26047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.867706-CDS-Ecto-sp13_S_contig86:22018..221391681464131.867706-CDS-Ecto-sp13_S_contig86:22018..22139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 22019..22139 -
1681464131.8813908-CDS-Ecto-sp13_S_contig86:22306..225301681464131.8813908-CDS-Ecto-sp13_S_contig86:22306..22530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 22307..22530 -
1681464131.8921325-CDS-Ecto-sp13_S_contig86:22705..229001681464131.8921325-CDS-Ecto-sp13_S_contig86:22705..22900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 22706..22900 -
1681464131.9032083-CDS-Ecto-sp13_S_contig86:23508..236041681464131.9032083-CDS-Ecto-sp13_S_contig86:23508..23604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 23509..23604 -
1681464131.9141634-CDS-Ecto-sp13_S_contig86:24575..247041681464131.9141634-CDS-Ecto-sp13_S_contig86:24575..24704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 24576..24704 -
1681464131.9260337-CDS-Ecto-sp13_S_contig86:25103..252051681464131.9260337-CDS-Ecto-sp13_S_contig86:25103..25205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 25104..25205 -
1681464131.936086-CDS-Ecto-sp13_S_contig86:25804..258731681464131.936086-CDS-Ecto-sp13_S_contig86:25804..25873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 25805..25873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86.20018.1

>prot_Ecto-sp13_S_contig86.20018.1 ID=prot_Ecto-sp13_S_contig86.20018.1|Name=mRNA_Ecto-sp13_S_contig86.20018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp
MSTAMNTNDGARWAPIPNVPNMKGGTNPEEMMRQMSIPDLAQKLDQAEST
FGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVE
MAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYAR
CLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVAS
ALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPI
TAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELV
EEEESGTAPPP*
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mRNA from alignment at Ecto-sp13_S_contig86:21591..26047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86.20018.1 ID=mRNA_Ecto-sp13_S_contig86.20018.1|Name=mRNA_Ecto-sp13_S_contig86.20018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:21591..26047- (Ectocarpus species13 EcNAP12_S_4_19m)
AATAGGGCTGATGCTTTCGTGGTGGCTCCGCCTAGTCATGGAGCTACTTG
GCGCTTCTCTCGGCAAAACCACGAGCAGCACCGGCAGCAGCAGCAGCAAA
TCAGCGTCACAGCCGTACGGGGGTGCTCTGTAGGCGGTAGTCTCGCTCGA
GTCGTGCCGAGGCTGAAGCGAAGGATGTCCACGGCGATGAACACCAATGA
CGGGGCGCGATGGGCACCGATACCCAATGTACCCAACATGAAGGTGAGCT
TCGTCGAGGATCTCGGTTCAGCTGCTGGCTCTCTGGTTTCCTTACGTGGC
GTGCTGCTGTGTCTACGGCCCTGCTTTGATGGACTACATGTAATCTGTTG
TGAATGTGAGTCCTGTCTTGTTGGCTGCGTGATAACTCCGTAAGAACTTG
GATGCTCACTTCTCGTCATCCGTCGCAAAGACGTTGGGCCTATGTACGCG
GTCACCACCTCTGATCCAAAGATTTACTGCTGTACTGCATACAGTACGTA
CCCTGCTGGATTGCTGGAGAGTCGCATCTGGCAGCTGGTACTCGACAGCG
GGTCAGGAACGTTCTGCTCGAAGCATGTCGGTAAAAGCCTGCATGGATAG
ATGTTGATACCGTGCATGAGACAAAGCACATAGAGCAATTAAGTCTCAGA
GAGATGCGTGGTGCACCAACAACAAGCCCCTTCCCCGGCTTTCGTCACGC
ACGCGGTCCTTTTAATACATGTGCTTAGCTTCAAGCACCGAGGTTTATTT
TACGATTTTACCTCGTCGCAGCTGCGGCTACAGCTCACTGTTTTACTTTG
ATACCGTACGTGCTGTTTACAACATGTGGTGTTTGTCCTTAGGGTGGTAC
CAACCCGGAGGAAATGATGCGACAAATGTCTATTCCCGATCTGGCGCAGA
AGCTAGACCAGGCCGAGAGCACCTTCGGCCAAGTGCATCCTCAGGTACGC
CCACCAGCTAATGGCCAAGAATCATGCCAGTGAACTTCTGTATGTTAGAA
CTCGACGTGATTTGTTGTCTCGCAGGTGTTGTCGTTCGGTAGCAACATTC
ATTGACGGACAAAAAGCTCATCATCTTGATTTCCCGCTTCGTCTTGGCTG
TGCACTCGGGAGAAGTTTTCTCAAGAGATTGGCCGTACTCTGTACTCTGC
AAGGCTGCGGGGTACCCTCTCGAACACCATCTCCAAGCATTGGCCAAGCC
AACGACGCCCGAACAAGACACATTACCTGCTACCTTCACCATCACTGGTG
CTACTTCACCGCCACGTACCATGTTGCTAGGGTGTACGAGTCCCTCACAT
TTGCTCTTTACATGTGGCGCCAAATGTTGGGGCCAAATTGCAGGTGGCGG
CAGCGCTAATTCCCCTGTCTCAGGCGCTCTACGCGAACGGAGATTTGGGC
CCTGCTAGGCAATCGTGCACGCGTGCTCTCCAGATTTTGCAGAGGGCGTA
CAAGGAAAGGCCATCGGTCGAGGTAGGCAAGGAGTCAGATATGTTCAATT
GGGTCAAGAAAATGTTATGATGTACTACAACTTCTCTGTCAAGCCGCGGG
GGGCAAGTGAATCGTGTTGTGCTAAACTGTCACCCCGGGGCTGCTGTCAA
CCAGAGGTACGGGATATTTTAACATATTACAGTGAACGAAAATCCCGCCT
GGGTGTTGTTGCGAAAACCAGAGACATGAACCGCACACGAGGGCTAGAAA
GAATACCAGTGTTATCCCGCTACAGAGACAGACATCTTTACCTTTTCGAT
GGCCAACATGTCAGCGAGGTCGATACTATATCAAGACACACTTCCTGTTG
CTGCCGCGACTTCGGAACTAAATTGTACCGTATGCACCATGTACGAGAAA
GTATTCAAGAGAAAGATGTTGAATGGAAGTAGATGGGGTAGCTTGGTGCA
AGTAACAACAAGGATTGATAATTGCTGGAGCGAAGACGGTCGATTTGTTT
TTGTTTGCCCTTGAGGAAGGTCGGCGAAAAACTATCGCCCGGGCCCTAGA
CACTCAACACCTCAACGCAATTTTATACATAAATAGTTTGGCCAGGACAC
AAGTTGCCCTCAACGGACGCACCGTTTAATGGTAAGGCATCAAACATCGT
TCCCGGAGGGGGAGCGCGCACAAGGCGTCATATTGCTTGCTGCCAAACGC
TCTCTTTAATCTCGCGCACCTGATCTCCGTCGGATATGGCTTCTGCCCCC
GCCTTTCGAATCTCATGCCCTTGTGTGTGTGGCTGCAAGTGCTCCAGTTT
ACTCTGAAGTGATGACGGAAGCACTGTTTCGCACCTGCTTCAAATCCAAG
CCTCTGTCAGCCTTCATCCCAACCGCCAAGTCCGCTGTTGAAAGCTTTTG
TCTGCGTAACGCGCGCATTAGTCAGCAATATACACCAAGTGGCCTGCGCG
TAATACACGACTTCATTTGATGCCCACTTCCGCCCGGTTGTAGATGGCAG
AGGCGCTCCACACGCTGGCAATGATACAGCAGGCAGAGAGCCCGGAAGTG
GGAGACAAGGCCTTGGGATCGCAGAACATGGCGTTAGAGGTACGGAATAT
GGTGTCCACATACTTCATCCTCCTGTACAACCAGATATTCATTTTCTCTC
TCAAGTCTGGCAGGATTGTTGAGTATTTGCCCCGAAAAGACTACGCGTGA
CAAAAGTCGCCCACGGGTACCATCCGGGTCGTACACTCTAGGGCAGTGGT
ACACCGTCCTTGGTGGTGCGCACTGTTTTCATGTACGACTGCACGCCGGA
GTTTTAGGTATGTGAACGGATAGAGTACACCGCCGCAATGGCAAGACCAA
ACTTTTGGCACGAATCATCATCTTTGTTTTCGTGTTTTTGATGTTCCGAT
TGCTTTGAATTTGAGGCAATTTGATTGTCTTCTGAACTTCTGATCTCTTC
AGCTCTCACCTACAGTCTACCGTGGTTGCATGATTGGACTTTGATACCCT
CAGCCGTACATATCGCCTAGCGTGTGAACACCTTCTCGGTGGCCAGTTGC
GAGTGGATAAACCACTCTCCGTTGGACATCCATGTGCAACCATCATGTGC
AACCATCTGTTACATCGGCTCTGATCTTAAAGCATCGTTTCCCTTCGTTT
TTCGTCACCCTGTTGCCCTCCGGCTCTCGTTACCCTGCTGTACACAGCTT
GCCATGCGTGTGTTCGGTCCAGATTCGGTAGAGGTTGCAGCATACGCCCG
CTGCTTGGCTCAGATGTCCGAGGACTATTCCCAGTTCCTATCCCCCGGTC
TTCCGCGGCCGTTCTACATGCCCAATCCGATACCGCTGTACCGCCAGACG
CTCTCCATCATCGAGAAAGTCATCGGACCCAAAGACCCTTCGGTGAGCCA
TCCTTTCAACCAATAATTGCACCGAGCTTGGAATAAACACCGATAAGCTG
ACCAGCTTTCGATTCTTGGTTCTTTTGGCCCTCATGACGCCTGGCTGTCA
GGTCACTCCTTTCCACAATTACTACCGCGCCCCCTCCGTGTGACACACCT
GCATGCCCTGTCTACAGGTGGCGTCCGCTTTAGATGATTTGGCGAGCGCC
CTTCTTTTCCATCGCGACGATGACTACACGGAAATGAAAGCAGTGACGCT
TCTCCCGGAGGCAGAAACCCTCGCCGCTCGCTCTCTCGCTATTTCGAGGG
CGTCCCTGGGCGAGGAACACCCGATAACGGCGGGAAGAGAACACAACCTA
GGCATGATCAAGAGAGGACTACAGAAGCCTAAAGAATCATTGTGAGCACA
CCGCACCTTGATCGCACTGCGCTTGGGAATCTTTTTGATGTAGGCCCGCT
CCGGGGCTGACGATACCCCCTGGATTGCGGCCCACCGTAGTGTATTTTCT
GTGCTGCCGCTCACTTTCGCACCCCTCACTTATCCGTTTGCTTTTTCTCT
TTCGGCAGAGATTGCTTCCGACGCGCGCTCGCAATTCGGGAAAAGGTTTT
GGGGGTAGATCACCCAGACTCGAAATCCTCGCGGGAGCTTGTGGAAGAAG
AGGAGAGCGGTACGGCGCCACCACCCTAAGTTTTGAACGTGTGTGCGTGG
CCTAGCCGCATTCTCCATAAGGAGCGTGTCTTACTTGACAGCTTGCGCGT
TGCCTCTCTCTCTCTGTACGAGGCTCGTTGCTCGCAGCGGATAGATTTTT
GTCTGCTTCGTATCGTTTTTTTGCTGTGGGAGCAACTTGAAACAGAAATA
CGAATCGAGCGCATATCTCTTCGCACACGGCACCCGACAACACGTGCAAG
TGGGCGATCCGTGATACAGTACTGTTTCAATGAGTGGCCGAGGGGCGTGT
TTGTCGGAGGATATGGTCTGACGCTTTCCTGGGGTCCCGTAGTGGGTGAA
CTTCGGCGAAATACGTTCATTGCTGCCATCCGCAATTTTTACGGATACAC
TCTACTCCGAGCGCACTCGTGTTTGTAGAGGAAGGAAGGCAAAGTCTTCT
TGCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86:21591..26047-

>mRNA_Ecto-sp13_S_contig86.20018.1 ID=mRNA_Ecto-sp13_S_contig86.20018.1|Name=mRNA_Ecto-sp13_S_contig86.20018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:21591..26047- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACGGCGATGAACACCAATGACGGGGCGCGATGGGCACCGATACC
CAATGTACCCAACATGAAGGGTGGTACCAACCCGGAGGAAATGATGCGAC
AAATGTCTATTCCCGATCTGGCGCAGAAGCTAGACCAGGCCGAGAGCACC
TTCGGCCAAGTGCATCCTCAGGTGGCGGCAGCGCTAATTCCCCTGTCTCA
GGCGCTCTACGCGAACGGAGATTTGGGCCCTGCTAGGCAATCGTGCACGC
GTGCTCTCCAGATTTTGCAGAGGGCGTACAAGGAAAGGCCATCGGTCGAG
ATGGCAGAGGCGCTCCACACGCTGGCAATGATACAGCAGGCAGAGAGCCC
GGAAGTGGGAGACAAGGCCTTGGGATCGCAGAACATGGCGTTAGAGCTTG
CCATGCGTGTGTTCGGTCCAGATTCGGTAGAGGTTGCAGCATACGCCCGC
TGCTTGGCTCAGATGTCCGAGGACTATTCCCAGTTCCTATCCCCCGGTCT
TCCGCGGCCGTTCTACATGCCCAATCCGATACCGCTGTACCGCCAGACGC
TCTCCATCATCGAGAAAGTCATCGGACCCAAAGACCCTTCGGTGGCGTCC
GCTTTAGATGATTTGGCGAGCGCCCTTCTTTTCCATCGCGACGATGACTA
CACGGAAATGAAAGCAGTGACGCTTCTCCCGGAGGCAGAAACCCTCGCCG
CTCGCTCTCTCGCTATTTCGAGGGCGTCCCTGGGCGAGGAACACCCGATA
ACGGCGGGAAGAGAACACAACCTAGGCATGATCAAGAGAGGACTACAGAA
GCCTAAAGAATCATTAGATTGCTTCCGACGCGCGCTCGCAATTCGGGAAA
AGGTTTTGGGGGTAGATCACCCAGACTCGAAATCCTCGCGGGAGCTTGTG
GAAGAAGAGGAGAGCGGTACGGCGCCACCACCCTAA
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