mRNA_Ecto-sp13_S_contig85980.20013.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85980.20013.1
Unique NamemRNA_Ecto-sp13_S_contig85980.20013.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85980.20013.1 vs. uniprot
Match: Q8QKV8_ESV1K (EsV-1-60 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV8_ESV1K)

HSP 1 Score: 180 bits (457), Expect = 4.010e-56
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 1 
Query:    1 AVDTGATDSDDGSTAQLANANKKRTLLALGGSILSVGVLAQVYDQYTRFTAPGRSL*SSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSIAQTSDEGMRTSGLEQESAAELAARASAQISS 363
            AVDT A ++DDG+T QLAN  KK+TLLALGGS+LS+GVLAQVYDQYTR+T+ GRSL SSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSIAQTSDEGMR+SGLEQESAAELAARASAQISS
Sbjct:   30 AVDTEAIENDDGTTVQLANVTKKKTLLALGGSVLSLGVLAQVYDQYTRYTSVGRSLSSSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSIAQTSDEGMRSSGLEQESAAELAARASAQISS 150
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BLAST of mRNA_Ecto-sp13_S_contig85980.20013.1 vs. uniprot
Match: D8LP93_ECTSI (EsV-1-60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP93_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.150e-55
Identity = 104/121 (85.95%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    1 AVDTGATDSDDGSTAQLANANKKRTLLALGGSILSVGVLAQVYDQYTRFTAPGRSL*SSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSIAQTSDEGMRTSGLEQESAAELAARASAQISS 363
            AVDT AT+SDDGST QLANANKK+TLLALGGSILS+GVLAQVYDQYTR+T+PG S  SSQYRSSSEMSPQELSRFQDRVSAAAAKLRRS+AQTS++ +R+SGLE+ESAAELAARASAQISS
Sbjct:   30 AVDTEATESDDGSTEQLANANKKKTLLALGGSILSLGVLAQVYDQYTRYTSPGSSFSSSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSMAQTSNQSVRSSGLEEESAAELAARASAQISS 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85980.20013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKV8_ESV1K4.010e-5686.78EsV-1-60 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP93_ECTSI1.150e-5585.95EsV-1-60 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85980contigEcto-sp13_S_contig85980:1..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size363
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.9949713-CDS-Ecto-sp13_S_contig85980:0..1711681464130.9949713-CDS-Ecto-sp13_S_contig85980:0..171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85980 1..171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.0182-UTR-Ecto-sp13_S_contig85980:171..3631681464131.0182-UTR-Ecto-sp13_S_contig85980:171..363Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85980 172..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85980.20013.1prot_Ecto-sp13_S_contig85980.20013.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85980 1..171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85980.20013.1

>prot_Ecto-sp13_S_contig85980.20013.1 ID=prot_Ecto-sp13_S_contig85980.20013.1|Name=mRNA_Ecto-sp13_S_contig85980.20013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
AVDTGATDSDDGSTAQLANANKKRTLLALGGSILSVGVLAQVYDQYTRFT
APGRSL*
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mRNA from alignment at Ecto-sp13_S_contig85980:1..363+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85980.20013.1 ID=mRNA_Ecto-sp13_S_contig85980.20013.1|Name=mRNA_Ecto-sp13_S_contig85980.20013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85980:1..363+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTCGACACAGGAGCAACCGACAGTGACGACGGAAGCACTGCACAGCT
GGCCAACGCCAACAAAAAGAGAACGCTGCTGGCGCTGGGTGGATCAATTT
TGTCTGTAGGCGTCCTCGCCCAGGTTTATGACCAGTACACTCGCTTCACG
GCTCCGGGTAGATCGTTGTAGTCGTCGCAATACCGCTCGTCGTCAGAAAT
GTCCCCGCAAGAGCTCTCTAGATTCCAGGACCGGGTGTCCGCAGCCGCGG
CGAAGCTACGACGAAGTATCGCACAGACATCCGACGAAGGCATGCGAACC
AGTGGATTGGAACAAGAGTCTGCCGCCGAACTCGCCGCCCGCGCCAGCGC
CCAGATTAGTTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85980:1..363+

>mRNA_Ecto-sp13_S_contig85980.20013.1 ID=mRNA_Ecto-sp13_S_contig85980.20013.1|Name=mRNA_Ecto-sp13_S_contig85980.20013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85980:1..363+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTCGACACAGGAGCAACCGACAGTGACGACGGAAGCACTGCACAGCT
GGCCAACGCCAACAAAAAGAGAACGCTGCTGGCGCTGGGTGGATCAATTT
TGTCTGTAGGCGTCCTCGCCCAGGTTTATGACCAGTACACTCGCTTCACG
GCTCCGGGTAGATCGTTGTAG
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