prot_Ecto-sp13_S_contig85980.20013.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig85980.20013.1
Unique Nameprot_Ecto-sp13_S_contig85980.20013.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85980.20013.1 vs. uniprot
Match: D8LP93_ECTSI (EsV-1-60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP93_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-21
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0 
Query:    1 AVDTGATDSDDGSTAQLANANKKRTLLALGGSILSVGVLAQVYDQYTRFTAPGRS 55
            AVDT AT+SDDGST QLANANKK+TLLALGGSILS+GVLAQVYDQYTR+T+PG S
Sbjct:   30 AVDTEATESDDGSTEQLANANKKKTLLALGGSILSLGVLAQVYDQYTRYTSPGSS 84
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BLAST of mRNA_Ecto-sp13_S_contig85980.20013.1 vs. uniprot
Match: Q8QKV8_ESV1K (EsV-1-60 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV8_ESV1K)

HSP 1 Score: 82.4 bits (202), Expect = 1.490e-18
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    1 AVDTGATDSDDGSTAQLANANKKRTLLALGGSILSVGVLAQVYDQYTRFTAPGRSL 56
            AVDT A ++DDG+T QLAN  KK+TLLALGGS+LS+GVLAQVYDQYTR+T+ GRSL
Sbjct:   30 AVDTEAIENDDGTTVQLANVTKKKTLLALGGSVLSLGVLAQVYDQYTRYTSVGRSL 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85980.20013.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP93_ECTSI1.010e-2185.45EsV-1-60 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QKV8_ESV1K1.490e-1875.00EsV-1-60 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..56
NoneNo IPR availableTMHMMTMhelixcoord: 26..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85980contigEcto-sp13_S_contig85980:1..171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85980.20013.1mRNA_Ecto-sp13_S_contig85980.20013.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig85980 1..363 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig85980.20013.1 ID=prot_Ecto-sp13_S_contig85980.20013.1|Name=mRNA_Ecto-sp13_S_contig85980.20013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
AVDTGATDSDDGSTAQLANANKKRTLLALGGSILSVGVLAQVYDQYTRFT
APGRSL*
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