mRNA_Ecto-sp13_S_contig8598.20012.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8598.20012.1
Unique NamemRNA_Ecto-sp13_S_contig8598.20012.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 7.390e-52
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 3 
Query:   45 GADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDGEPVEFSCSGDAGVSSGSSCCEADCGXXXXXXXSSRGSGAASCCTSSIQSAGILCSASGAAPCIL 356
            GADYDANGAGVCDMPCGGDADEICGGFYA+SVYENGADDG P EFSCSGDAGVSSGSSCCEADC XXXXXXXSSRGSGAASCCTS+IQSAGILCS SGAAPCIL
Sbjct:  216 GADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGVPDEFSCSGDAGVSSGSSCCEADCXXXXXXXXSSRGSGAASCCTSNIQSAGILCSDSGAAPCIL 319
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.270e-50
Identity = 91/104 (87.50%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   45 GADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDGEPVEFSCSGDAGVSSGSSCCEADCGXXXXXXXSSRGSGAASCCTSSIQSAGILCSASGAAPCIL 356
            GADYDANGAGVCDMPCGGDADEICGGFYAISVYEN   DGEPVEFSCSGDAGVSSGSSCCEADC        SSRGSGAASCCTSSIQSAG LCS SGAAPCIL
Sbjct:  159 GADYDANGAGVCDMPCGGDADEICGGFYAISVYEN---DGEPVEFSCSGDAGVSSGSSCCEADCDTCGGSGCSSRGSGAASCCTSSIQSAGTLCSDSGAAPCIL 259
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.620e-50
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 3 
Query:   45 GADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDGEPVEFSCSGDAGVSSGSSCCEADCGXXXXXXXSSRGSGAASCCTSSIQSAGILCSASGAAPCIL 356
            GADYDANGAGVCDMPCGGDADEICGGFYA+SVYENGADDG P EFSCSGDAGVSSGSSCCEADC XXXXXXXSSRGSGAASCCTS+IQSAGILCS SGAAPCIL
Sbjct:  386 GADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGVPDEFSCSGDAGVSSGSSCCEADCXXXXXXXXSSRGSGAASCCTSNIQSAGILCSDSGAAPCIL 489
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.840e-39
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:   45 GADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDGEPVEFSCSGDAGVSSGSSCCEADCGXXXXXXXSSRGSGAASCCTSSIQSAGILCSASGAAPCIL 356
            GADYDANG G+CD+PC GD +EICGGFYA+SVYEN ADDG P EFSCSGDAGVS G+SCCE    XXXXXXXS RGSGAASCCTSSIQ+AG LCS SGAAPCIL
Sbjct:  249 GADYDANGEGICDIPCSGDVNEICGGFYAMSVYEN-ADDGVPNEFSCSGDAGVSFGTSCCEXXXXXXXXXXXSMRGSGAASCCTSSIQAAGTLCSDSGAAPCIL 351
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.680e-10
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:   48 ADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDG 164
            ADYDANGAG CDM C GDA EICGGFYA+SVYEN  D G
Sbjct:  127 ADYDANGAGECDMACSGDASEICGGFYAMSVYENPDDSG 165
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.900e-10
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 3 
Query:   48 ADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDGEPVEFS 182
            ADYDANGAG CDM C GD+ EICGGFY++SVYEN  D   PV+ S
Sbjct:  249 ADYDANGAGECDMDCSGDSSEICGGFYSMSVYENDVD---PVDLS 290
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: D7G4N8_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 6.130e-8
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:   51 DYDANGAGVCDMPCGGDADEICGGFYAISVYE 146
            DYDANG  VCDMPC G++DE+CGG Y +SVY+
Sbjct:   31 DYDANGFSVCDMPCSGNSDEMCGGAYTMSVYQ 62
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-7
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:   48 ADYDANGAGVCDMPCGGDADEICGGFYAISVYENGADDGEPVEFSCSGD 194
            A+YD NG GVCDM C GD+ E+CGG YA+SVYEN   + +P    C  D
Sbjct:  186 AEYDVNGVGVCDMACSGDSREVCGGSYAMSVYENDNVEVDPSYRGCFAD 234
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.300e-6
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:   48 ADYDANGAGVCDMPCGGDADEICGGFYAISVYE 146
            ADY ANG GVCDMPC G++DE+CGG Y +SVY+
Sbjct:  238 ADYAANGFGVCDMPCTGNSDEMCGGPYTMSVYQ 270
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BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Match: D7FQI0_ECTSI (Imm upregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI0_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 5.580e-5
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  469 VVPRI-AHLGHHTLPTNRAMVALLLHQSWRNSAQLVS 576
            V PR  AHL    LPTNRA V+LLL QSWRNSAQLVS
Sbjct:  104 VTPRYYAHLARQVLPTNRATVSLLLRQSWRNSAQLVS 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8598.20012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KQV8_9PHAE7.390e-5294.23WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JU45_9PHAE1.270e-5087.50WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K646_9PHAE3.620e-5094.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW06_9PHAE3.840e-3980.77WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K060_9PHAE1.680e-1079.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH79_ECTSI3.900e-1068.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4N8_ECTSI6.130e-868.75WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVT8_9PHAE1.600e-755.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS7_9PHAE3.300e-669.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQI0_ECTSI5.580e-572.97Imm upregulated 8 n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8598contigEcto-sp13_S_contig8598:4962..6781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.918261-UTR-Ecto-sp13_S_contig8598:4961..51811681464130.918261-UTR-Ecto-sp13_S_contig8598:4961..5181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8598 4962..5181 -
1681464130.930449-UTR-Ecto-sp13_S_contig8598:5555..55701681464130.930449-UTR-Ecto-sp13_S_contig8598:5555..5570Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8598 5556..5570 -
1681464130.9517431-UTR-Ecto-sp13_S_contig8598:5846..58841681464130.9517431-UTR-Ecto-sp13_S_contig8598:5846..5884Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8598 5847..5884 -
1681464130.9620588-UTR-Ecto-sp13_S_contig8598:6736..67811681464130.9620588-UTR-Ecto-sp13_S_contig8598:6736..6781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8598 6737..6781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.9413013-CDS-Ecto-sp13_S_contig8598:5570..58461681464130.9413013-CDS-Ecto-sp13_S_contig8598:5570..5846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8598 5571..5846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8598.20012.1prot_Ecto-sp13_S_contig8598.20012.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8598 5571..5846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8598.20012.1

>prot_Ecto-sp13_S_contig8598.20012.1 ID=prot_Ecto-sp13_S_contig8598.20012.1|Name=mRNA_Ecto-sp13_S_contig8598.20012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MPCGGDADEICGGFYAISVYENGADDGEPVEFSCSGDAGVSSGSSCCEAD
CGTCGGSGCSSRGSGAASCCTSSIQSAGILCSASGAAPCIL*
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mRNA from alignment at Ecto-sp13_S_contig8598:4962..6781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8598.20012.1 ID=mRNA_Ecto-sp13_S_contig8598.20012.1|Name=mRNA_Ecto-sp13_S_contig8598.20012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8598:4962..6781- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGCGCCGGCTCGGCATTCTACGGAACGCAGTACTCGACGGAGGTACG
ACGTCGTGTAGAGTAATGTGACGTGCGAATCGCGTGTTTTGAAACCCCGG
AGGATATTTATTGGCGTGTGGTGGCTGGTGGTTATGCCGTGTGTACAGGT
TCGCTCCTGAAGGCACGCTTTGAACCGGCCGTAATTTATTACGGTGGTTC
GGAACTGCTTGAGCGGCAGTGTGATACACGTGCAGGTCAACAACAGGCAA
AAAAGGAAACGTTCGTCGTGGTCTAGCTGTGTCACCACGGCGAAGAATGA
TGTTGTGAATGATCTTGTCACGCTCTAACCTACATAGCCGGGAGGCCTTG
ACAACCAAATGGAACATGATTTTTCAACACCCTTCCCCAGAAACTGACAT
ACTGTCATGCCGAGCTGAGTTTTCCTATTCTTCGGACAACATTCTCAGTT
GCTGTGCTTATACGTGCGACAGCGACGAAACAAGCTGCTTGTATTAAGAA
CGCCTCGGGTGATGGGTCGCATCAATATACCAAGCACACAGAGTCCGCCC
ACCCATGCGTTGGTGATGCATTCGTGGCAACATGCGAACCACACCTGCAG
ATATAGTCTTCAGTCATCCTCTCTCTTGCTGCAAATAAATATCCTCCTCT
TTAGACTATGCGAGAAGAGGGAGTAATAATAAACTCGTCGAGATTGGGAG
ATGCGACCCTTTTTTCCGGTCATCTGTTGCCGCTAGTTCCGCCTCGCCCA
CCTTCACTATTCTCATTCTATCGACAAGCTGCAACCTCATGCGTATTAAA
AACGTCACGACAAAATTCTCCCCATTCTGTTCACGGCAACCACTTGCCTG
CTGTATACTAAACCACCTCGGACAACAGTGCTGGTGCGGCGCCGAAGGCG
CTGACTACGATGCCAACGGCGCGGGTGTCTGCGACATGCCTTGCGGCGGT
GACGCCGACGAGATCTGCGGAGGTTTCTACGCCATCTCGGTCTACGAGAA
CGGCGCGGACGACGGGGAGCCCGTGGAGTTCTCGTGCTCCGGCGATGCAG
GAGTGTCGTCCGGCTCTTCCTGCTGCGAAGCCGACTGCGGCACTTGCGGA
GGCTCGGGTTGCAGCTCCCGCGGCTCCGGCGCCGCTTCGTGCTGCACCTC
GAGCATCCAGTCCGCTGGCATCCTTTGCTCCGCCTCCGGGGCCGCCCCGT
GCATCCTCTAAGCTTCTACCCTCGCTGTTAGGTGAGCCACGCCCCCGTCT
CCGCGTGGGTTCGAAGCGCGTCTTCTGAGTGTTTGTTCGACGAAAACCGC
TAGAAAAGCCAGATGGGTCCGCACCTACAGTCAATGTATCAGGTGTTAGT
CCCGCATGTGTTTTCGAAATGACTACTCGGACGTCCTTCCGCACCCCAGG
GTGCGAAGGTTTAGGTATTGTACTTTTTCTCCGGGCAAGCTCCCTCAAAT
TTACCACAGAAGTTGATCTTGGCAACCTTCGACCACTGATTGGCGACGTC
TTTCTTTTGCCTGGTTCGCGAACTACTAGACGCAAGAGAAAATAAACTTT
TCTTCTGCTTTTGGTTCTTCCCCAAGACTCTCGAGGAATTTCTGGTGTAG
ATCGACGAACCTTGTTGTAACTACTTCCCTTCCTCTCTGGCCACGGACTT
TTCCGCCGCTACCTTGCCTGGACCTTTCGCTTGTTTCGCCACATGTTGTG
CCGCGTATCGCGCATCTCGGCCATCACACCTTGCCGACCAACAGGGCGAT
GGTAGCGCTTCTTCTCCACCAATCCTGGAGAAACTCGGCGCAATTGGTGT
CGTTTCAAGACCTCTGGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8598:4962..6781-

>mRNA_Ecto-sp13_S_contig8598.20012.1 ID=mRNA_Ecto-sp13_S_contig8598.20012.1|Name=mRNA_Ecto-sp13_S_contig8598.20012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8598:4962..6781- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTGCGGCGGTGACGCCGACGAGATCTGCGGAGGTTTCTACGCCAT
CTCGGTCTACGAGAACGGCGCGGACGACGGGGAGCCCGTGGAGTTCTCGT
GCTCCGGCGATGCAGGAGTGTCGTCCGGCTCTTCCTGCTGCGAAGCCGAC
TGCGGCACTTGCGGAGGCTCGGGTTGCAGCTCCCGCGGCTCCGGCGCCGC
TTCGTGCTGCACCTCGAGCATCCAGTCCGCTGGCATCCTTTGCTCCGCCT
CCGGGGCCGCCCCGTGCATCCTCTAA
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