mRNA_Ecto-sp13_S_contig8594.20009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 248 bits (634), Expect = 8.040e-73 Identity = 127/193 (65.80%), Postives = 147/193 (76.17%), Query Frame = 2
Query: 1184 SQEADCKKMVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGGFAITA 1762
S+EADCKKMVDTA+EKFG LHVAFNNAGVF+ FA++T+D++D LL++NVKSLAWCFKYQIPAM +TAGGKGSIIVNTS TA+RT+ +P M ASGVRVNSV PGHVETP YG+MP ETL A+T T QLIA PI+PEEIA VV+FLAS DAAMV GS+Y MDGG+AI A
Sbjct: 64 SKEADCKKMVDTAIEKFGGLHVAFNNAGVFRAVPFADITEDTIDDLLNINVKSLAWCFKYQIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 226 bits (576), Expect = 1.750e-64 Identity = 116/194 (59.79%), Postives = 136/194 (70.10%), Query Frame = 2
Query: 1181 VSQEADCKKMVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGGFAITA 1762
VS+E DCKKMVDTA+EKFG LHVAFNNAGVFKT F ++T+D++D +L+ NVKS+AWC KYQIPAM TAGGKGSIIVNTS T +R S +P + ASGVRVNSV PG VETP +GDMPV+TL A QL+ P PEEIAKVV+FLAS DA MV GS+Y MDGG+A+ A
Sbjct: 65 VSKEMDCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI) HSP 1 Score: 155 bits (391), Expect = 2.860e-40 Identity = 80/138 (57.97%), Postives = 96/138 (69.57%), Query Frame = 2
Query: 1208 MVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAA 1621
MVDTA++KFG LHVAFNNAGV+++A FA++ +D++D LL++NVKSLAWCFKYQIPAM +AGGKGSIIVNTS TA+R S P M ASGVRVNSV G V+TP +GDMP ETL A
Sbjct: 1 MVDTAIQKFGGLHVAFNNAGVYRSAPFADIMEDTIDDLLNINVKSLAWCFKYQIPAMKDSAGGKGSIIVNTSSTALRPSASPGMTGSGMYAASKAAAELLMKYAAIEGAASGVRVNSVARGLVKTPIFGDMPDETLVA 138
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.720e-28 Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 2
Query: 1184 SQEADCKKMVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGGFAI 1756
S + D K++VD A+E +GA++V+F NAG+++TA A +TK LD L D NVK +A+ KYQ+ A+ +GGKGS+++N+S + P G RVNS+ PG V T G GD P + + KT L+ +PEEIA+ V FLAS DA+ V G+ DGGF++
Sbjct: 65 SVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEK-SGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVAT-GLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSL 253
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: A0A7W0CME5_9ACTN (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=2 Tax=Streptosporangiaceae TaxID=2004 RepID=A0A7W0CME5_9ACTN) HSP 1 Score: 98.2 bits (243), Expect = 3.410e-19 Identity = 71/198 (35.86%), Postives = 100/198 (50.51%), Query Frame = 2
Query: 1172 QPPVSQEADCKKMVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNT-SGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPV---ETLAAITK--TDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGG 1747
Q VS DC+++VDTAVE+FG LHV FNNAG+ + T ++ + D ++ VNV+S+ KY IPAM +G IVNT SG ++ +G+RVNSV PG +TP + E AA K D+ + P+EIA+ V+FLAS A+ + GS+ V+DGG
Sbjct: 53 QADVSSPEDCRRVVDTAVERFGGLHVLFNNAGIIRRTTVLDLDVEEWDRVMAVNVRSVFLMCKYAIPAMT-----EGGSIVNTGSGWGLKGG-----GNAISYCASKAAVVNMTRALAIDHAKAGIRVNSVNPGDTDTPMLREEARQLREDWAAFEKDAADRPMGRSGTPDEIAQAVLFLASDAASYITGSALVVDGG 240
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: A0A7C4R8I1_9ARCH (SDR family oxidoreductase n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A7C4R8I1_9ARCH) HSP 1 Score: 97.4 bits (241), Expect = 8.130e-19 Identity = 62/192 (32.29%), Postives = 92/192 (47.92%), Query Frame = 2
Query: 1181 VSQEADCKKMVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGGFAI 1756
V+ D KMV +EKF + + NNAG++ F MT+ D +++VN+K + C K +P M GK I+N S A +V A G+ VN++ PG +ETPG M ETL I + L + +PE++AK+VVFLAS D++ + G V DGG+ +
Sbjct: 70 VTNPDDVGKMVKATIEKFNRIDILVNNAGIYPFKPFTEMTEQDWDKVMNVNLKGMFNCTKAVVPRMIEQKYGK---IINISSIA---GSVVAFPQLVHYSASKAGIVGFTRSLALELAPYGINVNAIAPGPIETPGTKSMEKETLEQIVRAIPLGRIG-KPEDVAKLVVFLASDDSSFITGQCIVCDGGYTL 254
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: UPI0003822421 (SDR family oxidoreductase n=1 Tax=Catelliglobosispora koreensis TaxID=129052 RepID=UPI0003822421) HSP 1 Score: 96.7 bits (239), Expect = 1.320e-18 Identity = 71/198 (35.86%), Postives = 96/198 (48.48%), Query Frame = 2
Query: 1172 QPPVSQEADCKKMVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNT-SGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVE-----TLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGG 1747
Q VS++ DC ++V AVE+FG LHV FNNAG+ + T + D D ++ VNVKS+ + IPAM S G IVNT SG ++ A+G+RVNSV PG +TP D + A D+ + +PEEIA V+FLAS A+ V GS+ V+DGG
Sbjct: 59 QADVSEDQDCARVVAAAVERFGGLHVLFNNAGIIRRTTALGIEPDEWDRVMAVNVKSVYLMCRNAIPAMTS-----GGAIVNTGSGWGLKGG-----GNALSYCASKAAVVNMTRALAIDHAAAGIRVNSVNPGDTDTPMLRDEARQLSEDWAAFAADAADRPMGRAGRPEEIAAAVLFLASDAASYVTGSALVVDGG 246
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: A0A2V7VX45_9BACT (Short-chain dehydrogenase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7VX45_9BACT) HSP 1 Score: 96.7 bits (239), Expect = 1.490e-18 Identity = 65/195 (33.33%), Postives = 102/195 (52.31%), Query Frame = 2
Query: 1181 VSQEADCKKMVDTAVEKFGALHVAFNNAGVFKTA--TFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAAITKTDQLIAMP----IQPEEIAKVVVFLASGDAAMVNGSSYVMDGG 1747
VS+ DC+ MV A E+FGALHVAFNNAG+F A + N +++ D ++D+N+K + KY++PA+ GG SII S AI + VP + +R NS+ PG VETP ++ + + +L+ +P + EE+A +FLAS +++ VN +S+++DGG
Sbjct: 61 VSKAKDCEAMVKFAEEQFGALHVAFNNAGIFDAADESVTNTSEEVWDRVIDINLKGVFLGCKYEVPALLRAGGG--SIINTASFVAIMGAAVPQIAYTASKGGVLAMTREIAVEFAR----QNIRANSLCPGPVETPLLAELLADPAR---RNRRLVHIPPGRFARAEEMANAALFLASDESSYVNATSFLVDGG 246
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: A0A4Q3PYI7_9BURK (SDR family oxidoreductase (Fragment) n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3PYI7_9BURK) HSP 1 Score: 95.5 bits (236), Expect = 1.650e-18 Identity = 62/191 (32.46%), Postives = 95/191 (49.74%), Query Frame = 2
Query: 1181 VSQEADCKKMVDTAVEKFGALHVAFNNAGVF-KTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTAIRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGYGDMPVETLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGGF 1750
V + D K VD AV +FGALH+AFNNAG+ A++ ++ +L+DVN+ S+ +C YQIP M GG IVN + A G+R+NS+ PG+++TP +P E A+ + + +P+E+A+VV+FL S A+ V GS Y++DG +
Sbjct: 33 VGKPDDVKAAVDAAVARFGALHLAFNNAGIGGPLGLVADIEIEAYRNLMDVNLHSVFYCMHYQIPVMLKAGGGA---IVNMASVLGLVGDAQAAAYTAAKHGVAGMTKAAALGYAD----KGIRINSIHPGYIDTPLLSSLPKEAYDALVGQHPIGRLG-RPQEVAEVVLFLLSDRASFVTGSQYLVDGAY 215
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Match: UPI00177C3176 (SDR family oxidoreductase n=1 Tax=Algoriphagus sp. Y33 TaxID=2772483 RepID=UPI00177C3176) HSP 1 Score: 95.9 bits (237), Expect = 2.520e-18 Identity = 70/198 (35.35%), Postives = 97/198 (48.99%), Query Frame = 2
Query: 1181 VSQEADCKKMVDTAVEKFGALHVAFNNAGVF-KTATFANMTKDSLDSLLDVNVKSLAWCFKYQIPAMASTAGGKGSIIVNTSGTA--IRTSTVPAMXXXXXXXXXXXXXXXXXXXXXXXXXASGVRVNSVLPGHVETPGY-----GDMPVETLAAITKTDQLIAMPIQPEEIAKVVVFLASGDAAMVNGSSYVMDGGF 1750
VS+E D K MV+ V +G L AFNNAG+ K A A T + D L+++N+K + C KY+IP M GKGSI VNT+ A + T+P G+RVN++ PG ++TP + GD +E A Q+I PEEIA VFL S DA+ + G + +DGG+
Sbjct: 63 VSKEMDVKSMVEKTVSTYGKLDFAFNNAGIEGKVAPIAETTSEEFDRLMNINLKGVWLCMKYEIPEMLK--NGKGSI-VNTASAAGLVAVPTLPIYVASKHGVVGLTKTTAVDYAK------QGLRVNAICPGGIKTPMFERTVGGDNVLEAQIA---AQQVIGRLGTPEEIANAAVFLCSDDASFITGIALPVDGGW 248 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8594.20009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8594.20009.1 >prot_Ecto-sp13_S_contig8594.20009.1 ID=prot_Ecto-sp13_S_contig8594.20009.1|Name=mRNA_Ecto-sp13_S_contig8594.20009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp MVDTAVEKFGALHVAFNNAGVFKTATFANMTKDSLDSLLDVNVKSLAWCFback to top mRNA from alignment at Ecto-sp13_S_contig8594:1956..6363+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8594.20009.1 ID=mRNA_Ecto-sp13_S_contig8594.20009.1|Name=mRNA_Ecto-sp13_S_contig8594.20009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8594:1956..6363+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8594:1956..6363+ >mRNA_Ecto-sp13_S_contig8594.20009.1 ID=mRNA_Ecto-sp13_S_contig8594.20009.1|Name=mRNA_Ecto-sp13_S_contig8594.20009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8594:1956..6363+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |