mRNA_Ecto-sp13_S_contig8593.20008.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8593.20008.1
Unique NamemRNA_Ecto-sp13_S_contig8593.20008.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8593.20008.1 vs. uniprot
Match: D7FQH7_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQH7_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 4.820e-162
Identity = 327/369 (88.62%), Postives = 333/369 (90.24%), Query Frame = 1 
Query:    1 MLSSLPAETAFPQHKRRSSKGMKVLGTPNREPPSSCLSSLTSNPSAFFGPAWSPSSSPASTVRSPLPLDADQPGSPDSSRVESVRKGEAFSSATGKATRSYVHEEEGRATTPQKHRTHGGAVHDR-------------RKLSFGGLSRGLLRLLGQRTLSDDSSKIGPKTGKQDKPKANVVFLGDRSEEDRESDEAPSTDSVTDERRQPPFGGGDEAEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPPXXXXXXXXXXXXXXXXXXXTGDERFQLPSRGGDEGPHQVRSPLVVGPSKRVAAEEADVENCRSATIDPRAVEIAASSTAEQAKVAVMPDTLAREAAEQGLVLPCGPSDEEKV 1068
            MLSSLPAETAFPQHKRRS KGMKVLGTPN EPPSSCLSSLTSNPSAFFGPAWSPSSSPASTVRSPLPLDADQPGSP SSR ES+RK +AFSSATGKATRSYVHEEEGRATTPQKHRTHGGAV+D              RKLSFGGLS+GLLRLLGQRTLSDDSSK GPKTGKQD PKA VVF GDRSEEDRESDEAPSTDSVTDERRQPPFGGGDEA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+A  XXXXXXXXXXXXXXXXXXX  DERFQLPSRGGDE PHQVRSPLVVGPSKRVAAEEADVENCR ATIDPRAVEIAA STAE AK AVMPDTL R+AAEQGLVLPCGPSDEEKV
Sbjct:    1 MLSSLPAETAFPQHKRRSIKGMKVLGTPNLEPPSSCLSSLTSNPSAFFGPAWSPSSSPASTVRSPLPLDADQPGSPGSSRAESLRKEKAFSSATGKATRSYVHEEEGRATTPQKHRTHGGAVNDTXXXXXXXXXXXXXRKLSFGGLSKGLLRLLGQRTLSDDSSKTGPKTGKQDAPKAKVVFPGDRSEEDRESDEAPSTDSVTDERRQPPFGGGDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALXXXXXXXXXXXXXXXXXXXXXXDERFQLPSRGGDEVPHQVRSPLVVGPSKRVAAEEADVENCRPATIDPRAVEIAAPSTAELAKAAVMPDTLVRQAAEQGLVLPCGPSDEEKV 369
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8593.20008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQH7_ECTSI4.820e-16288.62Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8593contigEcto-sp13_S_contig8593:206..1273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score492.7
Seed ortholog evalue1.5e-136
Seed eggNOG ortholog2880.D7FQH7
Model size1068
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Glycosyl transferase family 21
EggNOG OGs2C0MJ@1,2S2MV@2759
Ec32 ortholog descriptionCellulose synthase (UDP-forming), family GT2
Ec32 orthologEc-22_003060.1
Cds size1068
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.6215868-CDS-Ecto-sp13_S_contig8593:205..12731681464130.6215868-CDS-Ecto-sp13_S_contig8593:205..1273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8593 206..1273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8593.20008.1prot_Ecto-sp13_S_contig8593.20008.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8593 206..1273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8593.20008.1

>prot_Ecto-sp13_S_contig8593.20008.1 ID=prot_Ecto-sp13_S_contig8593.20008.1|Name=mRNA_Ecto-sp13_S_contig8593.20008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MLSSLPAETAFPQHKRRSSKGMKVLGTPNREPPSSCLSSLTSNPSAFFGP
AWSPSSSPASTVRSPLPLDADQPGSPDSSRVESVRKGEAFSSATGKATRS
YVHEEEGRATTPQKHRTHGGAVHDRRKLSFGGLSRGLLRLLGQRTLSDDS
SKIGPKTGKQDKPKANVVFLGDRSEEDRESDEAPSTDSVTDERRQPPFGG
GDEAEVALPGDRSEECKESREAPSTDSISDEECKLPSGGGNAPPGGWSEE
DEEFSEAPSTDSVTGDERFQLPSRGGDEGPHQVRSPLVVGPSKRVAAEEA
DVENCRSATIDPRAVEIAASSTAEQAKVAVMPDTLAREAAEQGLVLPCGP
SDEEKV
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mRNA from alignment at Ecto-sp13_S_contig8593:206..1273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8593.20008.1 ID=mRNA_Ecto-sp13_S_contig8593.20008.1|Name=mRNA_Ecto-sp13_S_contig8593.20008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8593:206..1273- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTATCCTCCTTGCCGGCTGAGACCGCTTTCCCACAGCACAAACGGCG
GAGCAGCAAGGGCATGAAGGTGCTGGGCACCCCCAACCGCGAGCCCCCCT
CGTCTTGCTTGTCCTCGCTGACGTCGAATCCGAGTGCGTTTTTCGGGCCG
GCGTGGTCGCCATCGTCCTCGCCAGCGTCGACAGTTCGATCGCCCCTGCC
CCTCGACGCCGATCAGCCGGGAAGCCCGGACTCTTCGCGCGTAGAGTCCG
TTCGAAAGGGGGAAGCGTTCTCTTCGGCGACTGGCAAGGCGACGCGGAGC
TATGTTCACGAGGAGGAGGGCAGGGCAACGACTCCACAAAAGCATAGGAC
GCACGGCGGTGCTGTTCACGACAGACGGAAATTATCGTTCGGGGGGTTGT
CGAGGGGGTTACTCCGCCTCCTCGGCCAAAGGACTCTCAGCGATGATTCG
TCGAAAATCGGTCCCAAGACCGGGAAACAGGATAAGCCGAAAGCCAATGT
CGTGTTTCTTGGAGATCGGTCCGAAGAAGACAGAGAGTCCGACGAAGCCC
CTTCGACGGATTCCGTCACCGACGAACGACGCCAACCCCCCTTTGGCGGA
GGAGACGAGGCCGAGGTCGCTCTTCCTGGAGATCGGTCCGAAGAATGCAA
AGAGTCCAGAGAAGCTCCTTCGACGGATTCCATCTCCGACGAAGAGTGCA
AACTCCCTTCCGGCGGAGGAAACGCGCCCCCTGGAGGTTGGTCCGAAGAA
GACGAAGAGTTCAGCGAAGCTCCTTCGACGGATTCTGTCACCGGCGACGA
ACGATTCCAACTCCCTTCCCGTGGAGGAGACGAGGGCCCTCACCAAGTGC
GCTCGCCACTGGTAGTAGGACCGTCGAAGAGAGTTGCCGCCGAAGAAGCA
GACGTGGAAAATTGCAGGTCCGCAACGATAGATCCAAGGGCGGTGGAGAT
TGCCGCGTCCTCTACCGCCGAGCAGGCGAAGGTGGCGGTAATGCCAGACA
CCCTGGCAAGGGAAGCGGCGGAACAAGGGTTGGTTTTGCCTTGCGGCCCG
TCGGATGAAGAAAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8593:206..1273-

>mRNA_Ecto-sp13_S_contig8593.20008.1 ID=mRNA_Ecto-sp13_S_contig8593.20008.1|Name=mRNA_Ecto-sp13_S_contig8593.20008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8593:206..1273- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTATCCTCCTTGCCGGCTGAGACCGCTTTCCCACAGCACAAACGGCG
GAGCAGCAAGGGCATGAAGGTGCTGGGCACCCCCAACCGCGAGCCCCCCT
CGTCTTGCTTGTCCTCGCTGACGTCGAATCCGAGTGCGTTTTTCGGGCCG
GCGTGGTCGCCATCGTCCTCGCCAGCGTCGACAGTTCGATCGCCCCTGCC
CCTCGACGCCGATCAGCCGGGAAGCCCGGACTCTTCGCGCGTAGAGTCCG
TTCGAAAGGGGGAAGCGTTCTCTTCGGCGACTGGCAAGGCGACGCGGAGC
TATGTTCACGAGGAGGAGGGCAGGGCAACGACTCCACAAAAGCATAGGAC
GCACGGCGGTGCTGTTCACGACAGACGGAAATTATCGTTCGGGGGGTTGT
CGAGGGGGTTACTCCGCCTCCTCGGCCAAAGGACTCTCAGCGATGATTCG
TCGAAAATCGGTCCCAAGACCGGGAAACAGGATAAGCCGAAAGCCAATGT
CGTGTTTCTTGGAGATCGGTCCGAAGAAGACAGAGAGTCCGACGAAGCCC
CTTCGACGGATTCCGTCACCGACGAACGACGCCAACCCCCCTTTGGCGGA
GGAGACGAGGCCGAGGTCGCTCTTCCTGGAGATCGGTCCGAAGAATGCAA
AGAGTCCAGAGAAGCTCCTTCGACGGATTCCATCTCCGACGAAGAGTGCA
AACTCCCTTCCGGCGGAGGAAACGCGCCCCCTGGAGGTTGGTCCGAAGAA
GACGAAGAGTTCAGCGAAGCTCCTTCGACGGATTCTGTCACCGGCGACGA
ACGATTCCAACTCCCTTCCCGTGGAGGAGACGAGGGCCCTCACCAAGTGC
GCTCGCCACTGGTAGTAGGACCGTCGAAGAGAGTTGCCGCCGAAGAAGCA
GACGTGGAAAATTGCAGGTCCGCAACGATAGATCCAAGGGCGGTGGAGAT
TGCCGCGTCCTCTACCGCCGAGCAGGCGAAGGTGGCGGTAATGCCAGACA
CCCTGGCAAGGGAAGCGGCGGAACAAGGGTTGGTTTTGCCTTGCGGCCCG
TCGGATGAAGAAAAGGTA
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