mRNA_Ecto-sp13_S_contig85837.19995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85837.19995.1
Unique NamemRNA_Ecto-sp13_S_contig85837.19995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85837.19995.1 vs. uniprot
Match: A0A6H5JKZ2_9PHAE (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.300e-35
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:   10 EVRAMEEELSRRGARLEVVRYGGGAMHAFTRPEKTSQVDREAGLSYCKYAEEDSWRRVVELLREEFA 210
            +VRAMEEELSRRGARLEVVRYGG AMHAFTRPEKTSQVDR+AGLSYCKYAEEDSWRRVVELLREEFA
Sbjct:  302 QVRAMEEELSRRGARLEVVRYGGSAMHAFTRPEKTSQVDRDAGLSYCKYAEEDSWRRVVELLREEFA 368
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BLAST of mRNA_Ecto-sp13_S_contig85837.19995.1 vs. uniprot
Match: A0A0G4EJ35_VITBC (DLH domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ35_VITBC)

HSP 1 Score: 54.3 bits (129), Expect = 7.040e-7
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   19 AMEEELSRRGARLEVVRYGGGAMHAFTRPEKTSQVDREAGLSYCKYAEEDSWRRVVELLREEF 207
            A ++ELS +    ++  YGG A H+FTRPEK +Q DR+AGL YC  +E  S+R     L++ F
Sbjct:  228 AFQQELSDQRTDWQIHIYGG-AKHSFTRPEKVTQADRDAGLQYCPKSERRSYRTTKAFLQDIF 289
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BLAST of mRNA_Ecto-sp13_S_contig85837.19995.1 vs. uniprot
Match: A0A5B8MBQ6_9CHLO (Dienelactone hydrolase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MBQ6_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.180e-6
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   19 AMEEELSRRGARLEVVRYGGGAMHAFTRPEKTSQVDREAGLSYCKYAEEDSWRRVVELLREEFA 210
            A  EE+  +GAR ++  +GG  +HAFTRP+KT+Q  +E G  Y KYA + SW       +  F+
Sbjct:  198 AFAEEMESKGARWQLHEFGG-CVHAFTRPDKTTQEHKEKGFFYDKYAADSSWAMTRAFFKSVFS 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85837.19995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JKZ2_9PHAE7.300e-3595.52DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0G4EJ35_VITBC7.040e-744.44DLH domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A5B8MBQ6_9CHLO1.180e-640.63Dienelactone hydrolase n=3 Tax=Chloropicon primus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85837contigEcto-sp13_S_contig85837:336..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score120.2
Seed ortholog evalue3.6e-25
Seed eggNOG ortholog2880.D8LC04
Model size213
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGs2SB8C@2759,COG0412@1
Cds size192
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.4444437-UTR-Ecto-sp13_S_contig85837:335..3561681464129.4444437-UTR-Ecto-sp13_S_contig85837:335..356Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85837 336..356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.4549184-CDS-Ecto-sp13_S_contig85837:356..5481681464129.4549184-CDS-Ecto-sp13_S_contig85837:356..548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85837 357..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85837.19995.1prot_Ecto-sp13_S_contig85837.19995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85837 357..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85837.19995.1

>prot_Ecto-sp13_S_contig85837.19995.1 ID=prot_Ecto-sp13_S_contig85837.19995.1|Name=mRNA_Ecto-sp13_S_contig85837.19995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MEEELSRRGARLEVVRYGGGAMHAFTRPEKTSQVDREAGLSYCKYAEEDS
WRRVVELLREEFA*
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mRNA from alignment at Ecto-sp13_S_contig85837:336..548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85837.19995.1 ID=mRNA_Ecto-sp13_S_contig85837.19995.1|Name=mRNA_Ecto-sp13_S_contig85837.19995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85837:336..548+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCTCCCGAGGTGAGAGCGATGGAAGAGGAATTATCGCGGCGAGGGGC
AAGGCTCGAGGTCGTCCGGTACGGCGGGGGTGCCATGCACGCCTTCACGA
GACCCGAGAAGACGAGTCAGGTCGACAGGGAGGCGGGCCTGTCGTACTGC
AAGTACGCCGAAGAGGACTCGTGGCGGAGAGTCGTGGAGCTACTGCGGGA
GGAGTTTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85837:336..548+

>mRNA_Ecto-sp13_S_contig85837.19995.1 ID=mRNA_Ecto-sp13_S_contig85837.19995.1|Name=mRNA_Ecto-sp13_S_contig85837.19995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85837:336..548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAGGAATTATCGCGGCGAGGGGCAAGGCTCGAGGTCGTCCGGTA
CGGCGGGGGTGCCATGCACGCCTTCACGAGACCCGAGAAGACGAGTCAGG
TCGACAGGGAGGCGGGCCTGTCGTACTGCAAGTACGCCGAAGAGGACTCG
TGGCGGAGAGTCGTGGAGCTACTGCGGGAGGAGTTTGCGTGA
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