mRNA_Ecto-sp13_S_contig8578.19985.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8578.19985.1
Unique NamemRNA_Ecto-sp13_S_contig8578.19985.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8578.19985.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.120e-63
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSSVNHQRLLSGARWRGGGGGVSRRAARKGSGVTVRREESHTRVETEAVLKRIVRVQ 324
            VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSSVNHQRLLSGARWRGGGGGVSRRAARKGSGVTVRREESHTRVETEAV+KRIVRVQ
Sbjct:  786 VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSSVNHQRLLSGARWRGGGGGVSRRAARKGSGVTVRREESHTRVETEAVMKRIVRVQ 893
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BLAST of mRNA_Ecto-sp13_S_contig8578.19985.1 vs. uniprot
Match: A0A7S2A7N5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7N5_TRICV)

HSP 1 Score: 54.7 bits (130), Expect = 2.330e-6
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSS 162
             F PPAPSNWGLPDDG  Y Y +SFP+L+++ +G VR  K+  +   + R  +S
Sbjct:  166 TFTPPAPSNWGLPDDGRTYHY-VSFPKLDRNLFGKVRPPKQWDQIKKKRRRGAS 218
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BLAST of mRNA_Ecto-sp13_S_contig8578.19985.1 vs. uniprot
Match: A0A7S1YZ68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZ68_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.370e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSSV 165
             F PP PSNWGLPDDG  Y YG+ FP+L+   +G +R+ K+ +    + R  SS 
Sbjct:  901 TFAPPPPSNWGLPDDGRSYHYGM-FPKLDPKAFGKIRYPKQ-WSAKQKQRGASSA 953
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BLAST of mRNA_Ecto-sp13_S_contig8578.19985.1 vs. uniprot
Match: A0A7S4R4H9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4H9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.400e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSSV 165
             F PP PSNWGLPDDG  Y YG+ FP+L+   +G +R+ K+ +    + R  SS 
Sbjct: 1031 TFAPPPPSNWGLPDDGRSYHYGM-FPKLDPKAFGKIRYPKQ-WSAKQKQRGASSA 1083
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BLAST of mRNA_Ecto-sp13_S_contig8578.19985.1 vs. uniprot
Match: A0A7S4R4H5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4H5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.410e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHRNVSSV 165
             F PP PSNWGLPDDG  Y YG+ FP+L+   +G +R+ K+ +    + R  SS 
Sbjct: 1298 TFAPPPPSNWGLPDDGRSYHYGM-FPKLDPKAFGKIRYPKQ-WSAKQKQRGASSA 1350
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8578.19985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LU92_ECTSI1.120e-6399.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2A7N5_TRICV2.330e-648.15Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1YZ68_9STRA2.370e-645.45Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4R4H9_9STRA2.400e-645.45Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4R4H5_9STRA2.410e-645.45Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8578contigEcto-sp13_S_contig8578:679..1275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score219.9
Seed ortholog evalue5.6e-55
Seed eggNOG ortholog2880.D8LU92
Model size324
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
Exons2
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5347@1,KOG0703@2759,KOG2127@1,KOG2127@2759
Cds size324
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.7637184-CDS-Ecto-sp13_S_contig8578:678..8531681464128.7637184-CDS-Ecto-sp13_S_contig8578:678..853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8578 679..853 -
1681464128.7774138-CDS-Ecto-sp13_S_contig8578:1126..12751681464128.7774138-CDS-Ecto-sp13_S_contig8578:1126..1275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8578 1127..1275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8578.19985.1prot_Ecto-sp13_S_contig8578.19985.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8578 679..1275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8578.19985.1

>prot_Ecto-sp13_S_contig8578.19985.1 ID=prot_Ecto-sp13_S_contig8578.19985.1|Name=mRNA_Ecto-sp13_S_contig8578.19985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
VFNPPAPSNWGLPDDGSQYAYGLSFPRLNKDRYGTVRWAKRLFKTPDQHR
NVSSVNHQRLLSGARWRGGGGGVSRRAARKGSGVTVRREESHTRVETEAV
LKRIVRVQ
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mRNA from alignment at Ecto-sp13_S_contig8578:679..1275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8578.19985.1 ID=mRNA_Ecto-sp13_S_contig8578.19985.1|Name=mRNA_Ecto-sp13_S_contig8578.19985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8578:679..1275- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTCAACCCTCCGGCACCGTCTAACTGGGGTCTCCCCGACGACGGTAG
CCAGTACGCCTACGGCTTGTCTTTCCCGCGGCTCAACAAGGATCGGTACG
GCACTGTACGCTGGGCGAAGCGGTTGTTCAAGACCCCGGATCAGCACCGG
TGTGTTTCTCTTCTTCTGTTTCTCCTCCCTGTGTTTTTGTTTCTTTTTCC
TCCTTGTGGTTGGGCGGGCGGGGGAAAGGCTAAGAGGAGAGTAGCGAGTT
TATCCGTTTTTTTTACGACCGTTTTGGGTATTTGTTCCTTCATTATTGAG
TAGCATGGTAACCGCAAGGTTGTTTCAATGTGTTGCTTGTTTTCTCAAGT
ATTTGATATGCCTTCACCTATTGTACATGTCTCGTTTCTCGTGTGTGTGT
GCCATGCACGTGCCCCGGGTAGGAACGTGTCTTCCGTGAACCACCAGCGG
TTGCTGAGCGGCGCGAGGTGGCGCGGCGGTGGCGGAGGCGTCTCTCGCCG
CGCCGCCCGCAAGGGTTCCGGGGTCACGGTCCGGCGGGAGGAGAGCCACA
CCAGGGTGGAGACGGAGGCCGTCTTGAAGCGCATTGTTCGGGTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8578:679..1275-

>mRNA_Ecto-sp13_S_contig8578.19985.1 ID=mRNA_Ecto-sp13_S_contig8578.19985.1|Name=mRNA_Ecto-sp13_S_contig8578.19985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8578:679..1275- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTCAACCCTCCGGCACCGTCTAACTGGGGTCTCCCCGACGACGGTAG
CCAGTACGCCTACGGCTTGTCTTTCCCGCGGCTCAACAAGGATCGGTACG
GCACTGTACGCTGGGCGAAGCGGTTGTTCAAGACCCCGGATCAGCACCGG
AACGTGTCTTCCGTGAACCACCAGCGGTTGCTGAGCGGCGCGAGGTGGCG
CGGCGGTGGCGGAGGCGTCTCTCGCCGCGCCGCCCGCAAGGGTTCCGGGG
TCACGGTCCGGCGGGAGGAGAGCCACACCAGGGTGGAGACGGAGGCCGTC
TTGAAGCGCATTGTTCGGGTGCAG
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