mRNA_Ecto-sp13_S_contig8575.19983.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8575.19983.1
Unique NamemRNA_Ecto-sp13_S_contig8575.19983.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.420e-28
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL
Sbjct:  998 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 1049
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: D8LDI0_ECTSI (Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.420e-28
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL
Sbjct:  964 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 1015
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A7S4E930_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E930_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.170e-25
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GKV+TEEEDAFLLNMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA+EL
Sbjct:  130 RGKVWTEEEDAFLLNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNASEL 181
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A835ZE29_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE29_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.640e-25
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GK +TEEEDAFL+NMMHRYGYGNWEVIR +I+KAWQF FDWFFKSRNAAEL
Sbjct:  873 KGKTYTEEEDAFLINMMHRYGYGNWEVIRTQIKKAWQFHFDWFFKSRNAAEL 924
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A8J2SZN3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZN3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.650e-24
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GKV+TEEEDAFLLNMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA+EL
Sbjct:  979 RGKVWTEEEDAFLLNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNASEL 1030
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: F0YAG6_AURAN (Uncharacterized protein RUV1 n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG6_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 3.630e-23
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GKV+TEEEDAFL+NMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA EL
Sbjct:  884 RGKVWTEEEDAFLVNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNAQEL 935
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A7S1BGS6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGS6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.520e-21
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +G+ +TEEEDAFL++MM R+G+G+WE IRMEIRKAWQFRFDWFFKSRNA EL
Sbjct:  647 KGRAYTEEEDAFLVSMMFRHGFGSWERIRMEIRKAWQFRFDWFFKSRNAVEL 698
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A7S1XXH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.240e-21
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GK++T EED FL+NMMHR+GYG WE IR+E+R+AWQFRFDW+FKSR+A E+
Sbjct:  187 KGKMYTLEEDVFLINMMHRHGYGEWERIRLEVRRAWQFRFDWYFKSRSAPEI 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A7S2SFZ0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFZ0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.290e-21
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +GK++TEEEDAFL+ MMHR+GYG W+ IR EIR+AWQF+FDWFFKSRN++EL
Sbjct:  985 RGKIWTEEEDAFLVCMMHRHGYGQWDRIRQEIRRAWQFKFDWFFKSRNSSEL 1036
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Match: A0A7S2LJ18_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LJ18_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 9.850e-21
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 156
            +G+ +TEEEDAFL+ MMH +GYG  E IRM+IR+AWQFRFDWFFKSRNA E+
Sbjct:   17 KGRAYTEEEDAFLVCMMHHHGYGAAERIRMDIRRAWQFRFDWFFKSRNATEI 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8575.19983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHP7_9PHAE1.420e-2898.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDI0_ECTSI1.420e-2898.08Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S4E930_9STRA3.170e-2584.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZE29_9STRA4.640e-2584.62P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8J2SZN3_9STRA7.650e-2484.62Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YAG6_AURAN3.630e-2382.69Uncharacterized protein RUV1 n=2 Tax=Aureococcus a... [more]
A0A7S1BGS6_9STRA1.520e-2176.92Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1XXH0_9STRA3.240e-2169.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SFZ0_9STRA5.290e-2173.08Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2LJ18_9STRA9.850e-2171.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8575contigEcto-sp13_S_contig8575:1288..1624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.0
Seed ortholog evalue2.1e-23
Seed eggNOG ortholog2880.D8LDI0
Preferred nameSMARCA5
Model size156
KEGG koko:K11654,ko:K11727
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
Exons2
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
Cds size156
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.6753385-CDS-Ecto-sp13_S_contig8575:1287..13891681464128.6753385-CDS-Ecto-sp13_S_contig8575:1287..1389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8575 1288..1389 +
1681464128.6909633-CDS-Ecto-sp13_S_contig8575:1570..16241681464128.6909633-CDS-Ecto-sp13_S_contig8575:1570..1624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8575 1571..1624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8575.19983.1prot_Ecto-sp13_S_contig8575.19983.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8575 1288..1624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8575.19983.1

>prot_Ecto-sp13_S_contig8575.19983.1 ID=prot_Ecto-sp13_S_contig8575.19983.1|Name=mRNA_Ecto-sp13_S_contig8575.19983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
QGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAA
EL
back to top

mRNA from alignment at Ecto-sp13_S_contig8575:1288..1624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8575.19983.1 ID=mRNA_Ecto-sp13_S_contig8575.19983.1|Name=mRNA_Ecto-sp13_S_contig8575.19983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=337bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8575:1288..1624+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGAAAGTGTTCACGGAGGAAGAGGACGCCTTTCTGCTGAACATGAT
GCACCGATACGGGTACGGCAACTGGGAGGTCATCCGCATGGAGATACGCA
AGGTGGCTATAATAGTAGCAGAGTAATAAGTTTACCGCGTGCCGCGTAAG
TTCAGCCCAAGCATCCGCCTTGCTGTTGTCTGGCGAATGGTGCCGTGTGA
TTGTTCGGTGCTCCGTTTTTCTCTCACCCTCCCACAAATTATTGTGTTCT
CCCACGCTTGTGCATTAACCGTGTTGCGCACAGGCTTGGCAGTTCCGGTT
CGACTGGTTCTTCAAGAGCAGAAACGCTGCTGAGCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8575:1288..1624+

>mRNA_Ecto-sp13_S_contig8575.19983.1 ID=mRNA_Ecto-sp13_S_contig8575.19983.1|Name=mRNA_Ecto-sp13_S_contig8575.19983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8575:1288..1624+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGAAAGTGTTCACGGAGGAAGAGGACGCCTTTCTGCTGAACATGAT
GCACCGATACGGGTACGGCAACTGGGAGGTCATCCGCATGGAGATACGCA
AGGCTTGGCAGTTCCGGTTCGACTGGTTCTTCAAGAGCAGAAACGCTGCT
GAGCTG
back to top