mRNA_Ecto-sp13_S_contig8574.19982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8574.19982.1
Unique NamemRNA_Ecto-sp13_S_contig8574.19982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8574.19982.1 vs. uniprot
Match: A0A6H5JUU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU6_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 1.020e-109
Identity = 176/191 (92.15%), Postives = 183/191 (95.81%), Query Frame = 1 
Query:  187 MVRKKMKRVADAVTADNEAASGLTGTVCSWLKDLDLVGHELLPAISSDLDIFSLLCRAGESSAGSRTAESKFAQARGLQALRAAVAGGSASVEDLRLIFLYGLLLYVDPGTSHLRKAIKNLLGATEKVIQEQQLKSGNSSMADSIAKLVAARLAKRSWDLQAGVAATHNEADPPGRTVTSAAAAVRTAVSV 759
            MVRKKMKRVAD +TADN+AASGLTGTVCSWLKDLDLVGHELLPAISSDLDIFSLLCRAGESSAGS TAESKFAQARGLQALRAAVAGGSASVEDLRLIFLYGLLLY+DPGTSHLRKAIKNLLGATEKVIQEQQL+SGNSSM DSIA LVAARLAKRSWDLQAG AATH+EADP G T T+AAAAVRTAVS+
Sbjct:    1 MVRKKMKRVADELTADNKAASGLTGTVCSWLKDLDLVGHELLPAISSDLDIFSLLCRAGESSAGSSTAESKFAQARGLQALRAAVAGGSASVEDLRLIFLYGLLLYIDPGTSHLRKAIKNLLGATEKVIQEQQLESGNSSMTDSIAGLVAARLAKRSWDLQAGAAATHDEADPSGGTATAAAAAVRTAVSL 191
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BLAST of mRNA_Ecto-sp13_S_contig8574.19982.1 vs. uniprot
Match: D7FZE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE0_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 4.300e-104
Identity = 192/224 (85.71%), Postives = 201/224 (89.73%), Query Frame = 1 
Query:  187 MVRKKMKRVADAVTADNEAASGLTGTVCSWLKDLDLVGHELLPAISSDLDIFSLLCRAGESSAGSRTAESKFAQARGLQALRAAVAGGSASVEDLRLIFLYGLLLYVDPGTSHLRKAIKNLLGATEKVIQEQQLKSGNSSMADSIAKLVAARLAKRSWDLQAGVAATHNEADPPGRTVTSAAAAVRTAVSVQRLMEVSAGKRALVAAQEGAILFRFIEVLDASL 858
            MVRKKMKRVADAV  DN+ ASGLTGTVCSWLKDLDLVGHELLP ISSDLDI +L CR GE+SAGS   ESKFAQARGLQALRAAVAGGSASVEDLRLIFLYGLLLY+DPGTSHLRKAIK+LLGATEK+IQEQQL+SGNSSM DSIA LVAAR AKRSWDLQAG AATH+ AD  G T T AAAAVRTAVS+QRLMEV AGKRALVAAQEG IL RFIEVLDASL
Sbjct:    1 MVRKKMKRVADAVPPDNQDASGLTGTVCSWLKDLDLVGHELLPTISSDLDISNLPCRTGETSAGSSAVESKFAQARGLQALRAAVAGGSASVEDLRLIFLYGLLLYIDPGTSHLRKAIKSLLGATEKIIQEQQLESGNSSMTDSIAGLVAARFAKRSWDLQAGAAATHDGADRSGGTAT-AAAAVRTAVSLQRLMEVPAGKRALVAAQEGVILLRFIEVLDASL 223
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BLAST of mRNA_Ecto-sp13_S_contig8574.19982.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.120e-5
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:  769 MEVSAGKRALVAAQEGAILFRFIEVLDASL 858
            MEVSAGKRALVAAQEGAILFRFIEVLDASL
Sbjct:    1 MEVSAGKRALVAAQEGAILFRFIEVLDASL 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8574.19982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUU6_9PHAE1.020e-10992.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZE0_ECTSI4.300e-10485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLM6_9PHAE4.120e-5100.00Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8574contigEcto-sp13_S_contig8574:661..2950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score349.4
Seed ortholog evalue1.3e-93
Seed eggNOG ortholog2880.D7FZE0
Model size895
KEGG koko:K01530
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.negative regulation of endoplasmic reticulum calcium ion concentration
EggNOG OGsCOG5543@1,KOG1810@2759
EC3.6.3.1
Cds size705
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.5994768-UTR-Ecto-sp13_S_contig8574:660..8461681464128.5994768-UTR-Ecto-sp13_S_contig8574:660..846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8574 661..846 +
1681464128.6457283-UTR-Ecto-sp13_S_contig8574:2946..29501681464128.6457283-UTR-Ecto-sp13_S_contig8574:2946..2950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8574 2947..2950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.6132667-CDS-Ecto-sp13_S_contig8574:846..14181681464128.6132667-CDS-Ecto-sp13_S_contig8574:846..1418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8574 847..1418 +
1681464128.6245966-CDS-Ecto-sp13_S_contig8574:1744..18441681464128.6245966-CDS-Ecto-sp13_S_contig8574:1744..1844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8574 1745..1844 +
1681464128.6353922-CDS-Ecto-sp13_S_contig8574:2913..29461681464128.6353922-CDS-Ecto-sp13_S_contig8574:2913..2946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8574 2914..2946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8574.19982.1prot_Ecto-sp13_S_contig8574.19982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8574 847..2946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8574.19982.1

>prot_Ecto-sp13_S_contig8574.19982.1 ID=prot_Ecto-sp13_S_contig8574.19982.1|Name=mRNA_Ecto-sp13_S_contig8574.19982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp
MVRKKMKRVADAVTADNEAASGLTGTVCSWLKDLDLVGHELLPAISSDLD
IFSLLCRAGESSAGSRTAESKFAQARGLQALRAAVAGGSASVEDLRLIFL
YGLLLYVDPGTSHLRKAIKNLLGATEKVIQEQQLKSGNSSMADSIAKLVA
ARLAKRSWDLQAGVAATHNEADPPGRTVTSAAAAVRTAVSVQRLMEVSAG
KRALVAAQEGAILFRFIEVLDASLKRNQCRSQRQ*
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mRNA from alignment at Ecto-sp13_S_contig8574:661..2950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8574.19982.1 ID=mRNA_Ecto-sp13_S_contig8574.19982.1|Name=mRNA_Ecto-sp13_S_contig8574.19982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8574:661..2950+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATGTAGGTTGCTGTACACACAGCAAGGCGCAAGGGACTGCAAGGGC
AACTTCAAAGACGGTTGCTTCGCAGAACACCTGTTGCTACCCTCCCCTTG
GCCAAGGACTATCACACGAGTGGCCCTCGTCGCTATTGCAGAGAAACAGT
GGCTGCCAGTTGAAGAGCCTGCGAACGCTGACAGCAATGGTGCGCAAGAA
GATGAAGAGAGTGGCTGATGCGGTTACCGCTGACAATGAAGCTGCGTCTG
GACTGACAGGCACCGTGTGCTCCTGGCTCAAGGATCTGGACCTCGTCGGC
CACGAGCTGTTGCCTGCGATCTCGTCTGACCTGGATATATTTAGTCTACT
GTGTCGTGCTGGCGAGAGCTCAGCAGGGAGTAGAACCGCAGAGAGCAAGT
TTGCCCAGGCCCGTGGGCTGCAAGCATTGCGAGCGGCTGTCGCCGGTGGG
TCGGCATCCGTTGAAGATCTACGCTTGATATTTCTGTACGGCCTCTTGTT
GTACGTCGATCCTGGCACCTCGCATCTCCGCAAAGCCATCAAGAACTTGC
TAGGAGCGACGGAGAAGGTCATTCAGGAGCAGCAGCTTAAGAGCGGCAAT
AGCAGCATGGCAGATAGCATTGCAAAGCTCGTCGCCGCCAGATTGGCAAA
GCGTTCGTGGGACTTGCAAGCGGGCGTGGCGGCGACACACAACGAAGCAG
ATCCACCAGGAAGGACGGTGACGTCAGCTGCCGCGGCTGTGCGTACGGCG
GTATCAGTGTGAGTTGCCAGCTCCACTCGTTGTCTTAAGGGTGCGTCACT
GCTGCACTGTAGTCAAGGTGCTTTGATGCTAGGGGTAACAATTGTGCAAT
TAGCGTGCCCCTGCGGTAACTTACAGACCTGCAGGAAATTTTATGTGGAT
GCTACAGTATTACACTCGACGACCATTGCTTGTTCGGTAGCGTGTGTCTC
CTCTTTATAACCGCGCGCTTGTAGGAGGAATACGTATTTTGTCTCGCTGT
GCAACAGTATCCAGTCTACTGTAGACCAGATCTGAGAATCATCTCCGCGC
CGTTTTTTCATCCCATGCAATCCTCCAATCAAAGGCAACGGCTCATGGAA
GTGTCCGCGGGCAAGCGAGCGCTCGTTGCAGCCCAAGAGGGAGCTATCTT
ATTTCGGTTTATTGAAGTGCTTGATGCCTCCTTGGCGGTGCAAGTGGCGG
CGCTGAACGCGTTGCATGGGCACTGCGTCGTTGGACAGCACCTGGGGAGC
CCTTCAGTAGGGACTGCTTTTGCTGCGCTAGAAAAGAAGGGCGTGGGTGG
CAAGGGTGATTCCGCCGCGGACCTGTACGCCGAAATCGACTGCTGTAGTG
AGCTTCTGAAGGCAGCAGCGTGCCTCATGCCGTTGACCAGGTGAAGGGAA
CAATTCTCCAACGTAGGTATGCTACCTTTGGAGATTTTGCACATGTACCT
GCTGCTTCTGTTGACCCCAACCTGTAGCACGCACAGGTTGAACTCGTCGT
TTTCGCGCACGTCAGGAAAAAAGAAGCGTATTAGGTTCAAAATGGCTTAC
AATGGTCTTCAGCTCTGCTTGGCCGGGTCAGATAGTTCCTAGAACAATGT
ATGCCGTGGTTCGGAGGTACTAATGTCTCGCGTGTCCGTCGATGATGATG
ATAGTGTTGTGTGTCTTGTGGTGTTCGTTATTCTTTGCGGGCGCACCTCC
TTGAATCCGCACTGCACCATCCAAAAGATGGGGAAGCCTTGGGTGGTCAC
AGGTCAACTACCCAAGAAACAAATGCGACAAAATGGCATTGGGAAAGTAG
AGGGACACACCAAGATCAACAGTAGAAATTCGAACGCATGCTGAGCGTGT
TCACAAGAAAACGCATGCTGAGCGTGTTTACAAGTAAATCACCACGTAGC
AGTCGAGAGCACCTCACCAACCCAACTGTCCTCTCGTTTGGTCTCCTTCG
TCCAAAGGGAGTGGCACGCGAACCAGCTTTCTCGGGGAGGATCTACCTTG
CGTCGCATGTGCCAGTCGTGCCTGCTGTTACTGTCCACACCCGCCATTCA
CCGGGAGTGCTCTACCCACGCGTCGGCTGTGCTGGTTCACTCGGCGGTGG
CGAATTGGAGATCAAGCACCGGTTGGCCATCGGACGACTTTTGCCCTCCG
GTGGGCACCCCAGCCCCAGCGGCAGCAACGTCTGTACCATCCGCGGCAGA
AAGTACAGCTACAGCAGTAGAATTACCACCGCCGCCACCGCCACCACCAT
CAGAAACGAAACCAGTGCCGAAGTCAACGACAGTAGGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8574:661..2950+

>mRNA_Ecto-sp13_S_contig8574.19982.1 ID=mRNA_Ecto-sp13_S_contig8574.19982.1|Name=mRNA_Ecto-sp13_S_contig8574.19982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8574:661..2950+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGCAAGAAGATGAAGAGAGTGGCTGATGCGGTTACCGCTGACAA
TGAAGCTGCGTCTGGACTGACAGGCACCGTGTGCTCCTGGCTCAAGGATC
TGGACCTCGTCGGCCACGAGCTGTTGCCTGCGATCTCGTCTGACCTGGAT
ATATTTAGTCTACTGTGTCGTGCTGGCGAGAGCTCAGCAGGGAGTAGAAC
CGCAGAGAGCAAGTTTGCCCAGGCCCGTGGGCTGCAAGCATTGCGAGCGG
CTGTCGCCGGTGGGTCGGCATCCGTTGAAGATCTACGCTTGATATTTCTG
TACGGCCTCTTGTTGTACGTCGATCCTGGCACCTCGCATCTCCGCAAAGC
CATCAAGAACTTGCTAGGAGCGACGGAGAAGGTCATTCAGGAGCAGCAGC
TTAAGAGCGGCAATAGCAGCATGGCAGATAGCATTGCAAAGCTCGTCGCC
GCCAGATTGGCAAAGCGTTCGTGGGACTTGCAAGCGGGCGTGGCGGCGAC
ACACAACGAAGCAGATCCACCAGGAAGGACGGTGACGTCAGCTGCCGCGG
CTGTGCGTACGGCGGTATCAGTGCAACGGCTCATGGAAGTGTCCGCGGGC
AAGCGAGCGCTCGTTGCAGCCCAAGAGGGAGCTATCTTATTTCGGTTTAT
TGAAGTGCTTGATGCCTCCTTGAAACGAAACCAGTGCCGAAGTCAACGAC
AGTAG
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