mRNA_Ecto-sp13_S_contig857.19979.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig857.19979.1
Unique NamemRNA_Ecto-sp13_S_contig857.19979.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: D7G587_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G587_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 4.990e-162
Identity = 240/255 (94.12%), Postives = 245/255 (96.08%), Query Frame = 1
Query:  115 VEPVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGDEVAVPYRKP 879
            VEPVLYDEKAVEWMM QLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKK        VVAPCKCKGTQKWISFSALNSERRKEA KWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATR+AIGVLATMVLWLLSPLLH+LIVRVLTSGVLWKNYHRLTF+VNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIES+ILESRLPVTVEVREDGDE+AVPYRKP
Sbjct:   37 VEPVLYDEKAVEWMMHQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKK--------VVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRVAIGVLATMVLWLLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTVEVREDGDEIAVPYRKP 283          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE)

HSP 1 Score: 465 bits (1197), Expect = 3.010e-158
Identity = 240/257 (93.39%), Postives = 244/257 (94.94%), Query Frame = 1
Query:  109 EEVEPVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGDEVAVPYRKP 879
            EEVE VLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCA+STEERRMDCRMYVEAEV            VAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTF+VNLPLPLQIMGIRFLMTWTNDQLLLVESM+RQSLTDIES+ILESRLPVTVEVREDGDEVAVPYRKP
Sbjct:  146 EEVESVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCALSTEERRMDCRMYVEAEV------------VAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMLRQSLTDIESRILESRLPVTVEVREDGDEVAVPYRKP 390          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A836CP79_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP79_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.900e-52
Identity = 103/237 (43.46%), Postives = 143/237 (60.34%), Query Frame = 1
Query:  133 DEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVRE 843
            D++  EW+MQQ  MYQTR AL+S  L +KGY L+ ++P P GL+CA ST+E  + CR+Y+E E G K        VVAPC+CKG+Q+WI+  ALN +RR+E  KW  CPTCQ  IDY+LYEA+  G  +  +A+LNN  A R A+           + +   LI+RV+ S V+W N+ R+  V    LPL I+G ++L          +E  VR  LT++ES ++E  LP TV   E
Sbjct:   73 DKEMAEWIMQQASMYQTRVALLSVELDKKGYGLKGVIPQPPGLICAKSTKEHPLRCRVYMEPEEGSK--------VVAPCRCKGSQRWIAIRALNQQRRREPLKWSKCPTCQAHIDYSLYEAHMAGLDRVPTAVLNNRGAGRAALAXXXXXXXXXXALIFQGLIIRVVISKVVWGNWDRIQGVWGQSLPLYILGFQWLRKRAAAAFARLEEWVRGELTEVESAVMERTLPETVSAAE 301          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A7S3XMD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMD3_HETAK)

HSP 1 Score: 158 bits (400), Expect = 1.640e-40
Identity = 103/252 (40.87%), Postives = 139/252 (55.16%), Query Frame = 1
Query:  109 EEVEPVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYK--LREIVPSPRG--LLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGD 852
            +E E   YD+    W++ Q+ +Y  RTAL++  L + G+   L  IV   RG  L  A+STEE+ M CR+Y EAE G K        VVAPCKCKGTQKWI +SALN + R E  K+KNC TC+ PIDY LY ++  G+ + +SA+L      +  +         LL  LLH L+ R L S  LW+NYHR   VV  PLPL+I  ++            +   +R  L + ES +++  LPVTV    DGD
Sbjct:   71 DEEELTSYDQDTALWLLNQMHVYHARTALLAKELRKTGHLTGLAAIVQEERGNKLDIALSTEEKPMPCRIYYEAEAGSK--------VVAPCKCKGTQKWIQWSALNQQWRNEPHKFKNCNTCKTPIDYKLYYSFAAGSTQWLSALLERPARLQALVAAGLAGGAALLGLLLHGLVARALLSAALWRNYHRALGVVYAPLPLKIFVLQLTYKPVLKSFDRLVKRLRDRLVEWESALVQQALPVTVN--GDGD 312          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: W7TIY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIY3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.680e-19
Identity = 79/251 (31.47%), Postives = 126/251 (50.20%), Query Frame = 1
Query:  136 EKAVEWMMQQLCMYQTRTALISNPLAEK-----------GYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMV---LWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVRED 846
            E+   W+  Q+  YQ   AL +  L ++           G+K  E    P  ++ A        +CR++ E ++G K        +VAPC C+GT KW+ F+ +N  RR++    + C TC   IDY  Y+ +G    + VS  L+++   R  +  LA+ V   +  + PL  +L++RVLTS + W+ +     VV  PLPL+I+  +++        L  E  VR++L + ES +LE  LPVTV V ED
Sbjct:  199 EEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDLGAK--------LVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLL--LASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV-VAED 435          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A4D9D8S7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8S7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.040e-19
Identity = 73/224 (32.59%), Postives = 118/224 (52.68%), Query Frame = 1
Query:  184 RTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMV---LWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVRED 846
            R A++ +   + G+K  E    P  ++ A        +CR++ E ++G K        +VAPC C+GT KW+ F+ +N  RR++    + C TC   IDY  Y+ +G    + VS  L+++   R  +  LA+ V   +  + PL  +L++RVLTS + W+ +     VV  PLPL+I+  +++        L  E  VR++L + ES +LE  LPVTV V ED
Sbjct:   11 RHAVVGDTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDMGAK--------LVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLL--LASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV-VAED 220          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A7S0Y6J6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y6J6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.410e-10
Identity = 66/258 (25.58%), Postives = 125/258 (48.45%), Query Frame = 1
Query:  136 EKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREI--VPSPRGLL--------CAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATK----WKNCPTCQ----GPID-YALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGD 852
            +K   + M+Q  + Q R   +S  LA++   +  +  V +P G +        CA+STE     C +  E E G K        +V P +   T KWI+ +ALN  RR + +K    W +    +    GP   Y+L + + G  G  +S +L+ +R + + +G++   ++  L P++ +L+ R L S  LW  +      V++ LP +++ ++ + ++       + S+++  L D+E QILE  +P+T+    + D
Sbjct:  117 DKLQAYRMKQQVLLQLRATFLSEALAKRSLPIPSLKDVSTPDGKVPPKKVDWDCAMSTEADPKHCLISYEPEPGSK--------LVVPTELASTDKWITLAALNRLRRDDPSKVEPMWSDRYAIRSSWFGPNSRYSLLQ-HVGPKGVVLSTLLDGNRLSTV-VGLVLLFLVVQLMPVIEILVNRFLVSSFLWSRWISWYRYVHIGLPFKLLILQTVYSYVAKGFAALVSVIKDKLVDLECQILEETIPLTMGEGSEDD 364          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: K0T0A2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0A2_THAOC)

HSP 1 Score: 65.9 bits (159), Expect = 1.030e-7
Identity = 72/258 (27.91%), Postives = 122/258 (47.29%), Query Frame = 1
Query:  136 EKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREI--VPSPRGLL--------CAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPI---------DYALYEAYGGGAGKAVSAIL---NNSRATR--IAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEV 837
            EK +++   Q  +YQ R+  ++  LA +G  L  I  V +P G          CA+ST+E    C    +AE   K        VVAP    GT +WIS +ALN  RR + TK +     Q  +         +++L + + G  G  VS++L    N  A R  + + VL+ ++L++  PL+   + R+L S   W  +     +     PL+++  +++          +E+ VR+ + D+E +ILE  +P+TV V
Sbjct:  234 EKVLKFRTDQQLLYQLRSTYLTEMLAARGVPLPTIISVSTPDGEKPPEKVDWDCALSTDEEPKSCLYSFDAEPDTK--------VVAPL---GTDQWISLTALNRLRRTDPTKVEPMWHSQYGVLQSWFADSSEFSLLQ-HVGIKGFFVSSVLLDGGNGMALRSLLVLSVLSLLILFM--PLIEYTVQRILVSAPFWNRWTFWGRIARAGFPLKLLIGQYVWKAVALAFRKLENEVREFVVDLECEILEDSVPITVGV 477          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: B8BYG1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYG1_THAPS)

HSP 1 Score: 63.9 bits (154), Expect = 2.770e-7
Identity = 71/270 (26.30%), Postives = 115/270 (42.59%), Query Frame = 1
Query:  139 KAVEWMMQQLCMYQTRTALISNPLAEKGYKLREI----------VPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPI---------DYALYEAYGGGAGKAVSAIL---NNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTV----------EVREDGD 852
            K +++  +Q  +YQ R+  +S  LA +G  +  +          VP      CA+ T +    C    +AE   K        VVAP    GT +WIS SALN  RR + TK +     +  I         +Y++ + Y G  G  +S++L    N    R  + +     L L+ PLL  +I R++ S   W  +     +     PL+++  +            +ES VR+   D+E +ILE  +P+TV          E R+DG+
Sbjct:  103 KLLKYRTEQQLLYQLRSTYLSEMLASRGVPVPTVLGVATAEGNKVPEMVDWDCAMCTYDEPKSCLYSFDAEPNTK--------VVAPI---GTDQWISLSALNRLRRTDPTKVEPMWHSRYAILQSWFSDTSEYSMLQ-YVGFKGFVISSVLLDGGNGMILRSLLILTVLSALVLVMPLLEFIIGRIIVSAPFWAQWQTWGRIARAGFPLKLLLGQLAWKGIASSFGKMESEVREFFVDMECEILEESVPLTVGPGSEVVDVEEERDDGE 360          
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A7S2PIB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PIB9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.060e-7
Identity = 74/264 (28.03%), Postives = 115/264 (43.56%), Query Frame = 1
Query:  136 EKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIV----------PSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPI---------DYALYEAYGGGAGKAVSAIL---NNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEV--REDGDE 855
            EK  ++  +Q  +YQ R+  +S  LA +G  L  I           P      CA+ TEE    C    +AE   K        VVAP    GT +WIS SALN  RR + TK +     +  I         ++++ + + G  G  VS++L    N    R  + +    V+  L PLL  ++ R++ S   W  +     VV    PL+++  +            +E+ VR+   D+E +ILE  +P+TV V   E+ DE
Sbjct:  110 EKLSKYRTEQQILYQIRSTYLSEMLALRGVPLPTITSVSTADGDKPPEKVDWDCAMCTEEDPKSCLYSFDAEPNTK--------VVAPL---GTDQWISLSALNRLRRTDPTKVEPMWHSRYSILKSWFADESEFSMLQ-HVGVKGFLVSSVLLDGGNGLVLRSLLIMTVLSVIITLMPLLEFIVGRIIVSAPFWAQWTTWGRVVRAGFPLKLLLGQLAWKGVATTFSKLENNVREYFVDMECEILEESVPLTVGVDSMEEEDE 361          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G587_ECTSI4.990e-16294.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUK4_9PHAE3.010e-15893.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP79_9STRA2.900e-5243.46RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S3XMD3_HETAK1.640e-4040.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TIY3_9STRA2.680e-1931.47Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D8S7_9STRA7.040e-1932.59Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0Y6J6_9STRA2.410e-1025.58Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
K0T0A2_THAOC1.030e-727.91Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8BYG1_THAPS2.770e-726.30Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2PIB9_9STRA3.060e-728.03Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig857contigEcto-sp13_S_contig857:5510..9744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.9
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog159749.K0T0A2
Model size1631
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2E7VH@1,2SEDS@2759,2XCFF@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_006620.1
Cds size882
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig857.19979.1prot_Ecto-sp13_S_contig857.19979.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig857 6259..9744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.2143588-UTR-Ecto-sp13_S_contig857:5509..62581681464128.2143588-UTR-Ecto-sp13_S_contig857:5509..6258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig857 5510..6258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.2268646-CDS-Ecto-sp13_S_contig857:6258..64081681464128.2268646-CDS-Ecto-sp13_S_contig857:6258..6408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 6259..6408 -
1681464128.2377212-CDS-Ecto-sp13_S_contig857:6804..69481681464128.2377212-CDS-Ecto-sp13_S_contig857:6804..6948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 6805..6948 -
1681464128.2484453-CDS-Ecto-sp13_S_contig857:7237..73571681464128.2484453-CDS-Ecto-sp13_S_contig857:7237..7357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 7238..7357 -
1681464128.269338-CDS-Ecto-sp13_S_contig857:7739..78701681464128.269338-CDS-Ecto-sp13_S_contig857:7739..7870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 7740..7870 -
1681464128.2789211-CDS-Ecto-sp13_S_contig857:8490..86081681464128.2789211-CDS-Ecto-sp13_S_contig857:8490..8608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 8491..8608 -
1681464128.288089-CDS-Ecto-sp13_S_contig857:9525..97441681464128.288089-CDS-Ecto-sp13_S_contig857:9525..9744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 9526..9744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig857.19979.1

>prot_Ecto-sp13_S_contig857.19979.1 ID=prot_Ecto-sp13_S_contig857.19979.1|Name=mRNA_Ecto-sp13_S_contig857.19979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
MRQTAGEEDEESQEDEDEVEDEGMMTGGEEDEEQEVEEVEPVLYDEKAVE
WMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDC
RMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWK
NCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLL
SPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQL
LLVESMVRQSLTDIESQILESRLPVTVEVREDGDEVAVPYRKP*
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mRNA from alignment at Ecto-sp13_S_contig857:5510..9744-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig857.19979.1 ID=mRNA_Ecto-sp13_S_contig857.19979.1|Name=mRNA_Ecto-sp13_S_contig857.19979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig857:5510..9744- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCAGACGGCAGGGGAGGAGGACGAGGAAAGCCAAGAGGACGAGGA CGAAGTGGAGGACGAGGGGATGATGACCGGCGGCGAGGAGGATGAAGAGC AAGAAGTGGAGGAGGTCGAACCTGTTCTATACGACGAGAAGGCCGTGGAG TGGATGATGCAGCAGCTGTGCATGTATCAGACGCGCACGGCTTTGATCTC AAACCCTCTGGCAGAAAAGGTACACTCATGAACGACGCTTTACAGATCTC GGGGGCCAAACAAGCGAATGATACTATATCACACTCGACATGTTCGCCAA GTTTGCAGCATGCACCTCGTGGCACAGTTACTCCTCATGGGCAGAGATGC TACTACAGCAGCAGCCACATCGGAACGGTGGAACGTTGCCGTAGAGTCAT CTTGAGAAAAAGTAAGAGCCCTTGTTTTCCGTCCCCGCGATTTTCTCGGT GGCTGCATACTTCATCCATCCTCCATGCTGTCACCTCCCACCCGCTCTAT TATCTCGACTCTACTCTTGATCGTGTTCGTTGTCCATGAACGTAGTTATA CTATGTATTTACCCTATCGTAGCTCGGTAGAGCGACCTATGCTCACAAAC CATGCTCGAAGTGTGGGTTACGGTTAGGATTGAGGGCCGGGTTAGGCCTT TTGTAGTTTGGCCTAGCACTGTGGTCTACAGTAGCCTCCGGGCTGGAAAC CTCCCACTTAAAGTTTGCTTTTGTTTCGTCCTTACTGTTGGTACACAAAA ACTGTTGAACTGGTGGACGCAAGCAAGTCCCCAGTCCTGGAGTACACCCG CCGGTCCAGTGAAGCGCGCTGCACGATGGTTGTTTGTGCTTAAATATTTA AATCTAGAATGAATGTCGACGGCGTAGACTACCCACGAATGAAACACGTT CGTCTCAGCGGCATGGAACACAACTATGTCCTGGTCTGCGGAGGCGGGCC GCGTGGAGCCGCGGGACCGCGGAGGAGGTGTATCTGCCCTTACAGTACTG CTGTGTGCTTGTCCCCGGTGTGGATGTACACCTTTGCCGGCATGGAATCC TTCATGCAGTTGATGTGCAAACAGAGCTTTTGCGCGCCATTCTCAAGCAC CGCTGAAAGAGCATATTTCGTGTTCTTTTGTCCCAGGGCTACAAACTGAG GGAGATTGTACCGTCGCCCCGAGGGCTTCTCTGTGCGGTCAGCACGGAGG AGCGGCGCATGGACTGTCGGATGTATGTGGAAGCAGAGGTTGGCAAGAAG GCGAGTATTTGCGGATTCTTCCCCGTAGTGCTGCACGGTTGGTCATGCAC AAGCGATTAGTGAGGTGATCCTCGGAGCAAGGGCTAGGGTCGGGCCGAAG CAATGTACGTCACGCCACGTCTTACCGCAGCAGATGCTTGCACAACTAAC TGCTTGTGTGTGGCGTGAGAAAGATGGCTCGAGTGTTGTCAAGTTACCCA AGATTTTCTATCGCCTTCCTCCTGCTGTGTGACCCTGCATGTTGTGCCAA ACATTTATGCCGGAACGTGCAGACTGACCCCCAGTTACATATTTTTTATC CACAAGATTTCGACTCTTTTCGCAAAGATGGAAGGGTTATGGTCTCTTCT TCAATATCTCGGTCGAAGTCTTGAAGGTGGTGCGATATTTTGACAACTTT GAATCGAACCAGCTCTTGCGCAAAAGTTGATAATGTTGCAAAACCTGCGT GCACGCAACACGAGTAACTTACCTCCGTCGGAAGCTTATGAAGGAGCGAA AGACGCAGACAAACACCAAGTGCGTTTCGCTGGCAGATGATTCTCTCTAG ACGTGCTGCCTTTTGCAAACCGTAGTAGAGAATGCACCTCAAGTGCCGTT GTTTGCGGCCGTCTAAATGGCAAGTGTCACGTTTGTGCCCCCAGGTGGTG GCGCCTTGCAAATGCAAGGGTACGCAGAAGTGGATTAGTTTTTCGGCGCT GAACTCGGAGAGAAGAAAGGAGGCCACCAAATGGAAGAACTGTCCCACGT GCCAGGTTCGCTTTTCGTGCCCATTGTCTGTTTCAAAAATTTTCGATGCC GCTGAACTATGTTAATGAATGGAATTCGGGCTGGTCTAGCTGTAGTAGAG TAAGCCCTCATGTTCGGCGCGGCATGCTTGACAGCGCTATTGTGTTGCGC CATGAGCAAGAAGCTGCTGCTCTCAAGAACCGAACCAGTGTTTCGTTGAA CCCGGCGAGAACCACTAGCAAGAGCTGAGCACTTAATATCCGTTTCATGT TTTCGTTGTATTCCTTTTCTTTTTGTTGTGTGTGTGATTTTTCTTACATA AATATCTTTGTGTGGTTGGTTGTTCGTAAACTCACAGATCCCGCTCTCCC GTCGCGGAATACGCGATTGTGTCGCGATTCATTTCAGGGTCCCATCGACT ATGCGCTGTACGAGGCGTACGGCGGTGGCGCAGGGAAAGCCGTTTCAGCG ATACTCAACAATTCGAGAGCAACACGAATAGCGATTGGCGTTCTCGCGAC CATGGTGGTAAGGGCTATCCCGGTGTGAATTATTTTGCATCGTGTTTTCG ACCCATTTTTCCCGCGTCATGTGGAGATGACCAGGCCATAACATCGCCTA AACATATCTCCACGGTGGCTTATGTGTTCTGTTTTTCACCGATTGGTTGG ATCGATTAGCTCCGAAGAGCGATTGAGTCACCCAGTTTTTATTACTGCTC TGCTGCATGTTACTGGTATGTTGTCCCCAAACGAACCATGTTTCCCTTCC CACGGCTATCCGTGCCACCGCTGACGTTGCCTCCGTTTTACGTCAGTTGT GGCTTCTCAGCCCCCTGCTCCACTTGCTGATCGTACGCGTGCTGACGAGC GGGGTGTTGTGGAAGAACTACCACCGCCTCACGTTCGTCGTGAACCTCCC GCTGCCGCTCCAGATCATGGGCATCCGGTTCCTCATGACGGTGTGAATTG CAGTGATGCTGTTGCCCTCCTGTCGAACGCTCTCTATTTTGAGTAAACCC TCGCAGTTTTATTTGTCAGGACGACAGTGTGAGAAAATCGAGAGTGCCAA CAAAGAGACCTAACTGCGCAGGAAGAAATTCAAAAACAATTAGTCGCGTG CTTTCCAGGACGCACTGTGGACAATTGCGACATGTTCCAGATCTGTGAGC AACCGTGACGTAGCGCATTTTCGGGGCTCTGTTGAAACGCTTTTTTCGCC CACGTCAAATTCGCGCATGGTGTCTGGTTGGTAACACAGAAGTGTGTGGT GGTCGGACTGCTGTGTTGCTGACGCTGCCGCTCGTTTTGCCTTTGGCCCG TCATCTGTCCTGTCCTGTCTAATCTCAATTTCGCAGTGGACCAATGATCA GCTGCTCTTGGTCGAAAGCATGGTGCGACAGTCTCTGACCGACATAGAAA GCCAGATCCTGGAATCAAGACTGCCAGTGACGGTAGAGGTTCGGGAGGAC GGGGATGAGGTTGCTGTGCCGTATCGGAAGCCGTGAGGGGGGTGTTTTGG TTGCACCATCAGCAGAGTGAAGCATGGCTGTGTGGCTCTGACAAGGTTTC CCTGTTGGCCCTCATTCGTGCCGCGAGGTCCTTGCTCTTCAGGTTTGCAT GTGGTATCGTTCATTCGTCAAGTCACGGTCGAGTTTTCTCGTGTTCGATG CTGCAGGTCGTCGCTATGACAGGTTGTCGGTCGCCATGCTGGTGCAATAG ATCACGACGAATCTTGCCGCCTCCGTTTGTACGGTGGCTTGAAACATGAG GAGGGGTGTCCTGAACGTCGCGCTTTTATGAGGCAAAAACAGTAGTTCCA GTTTCGTTTCTGGATGCTGGACAGCCGTGGTGTGTTTGCCCGAAGTTGAG GGTGTTGAATGGCAAGAGAATGGACCGATGGCAAGAGAGGATACCATACA TATCGTTTACTTTTCTGCGCAGACCTGTGTGTCCAGCTATTCGTGTTGGG CTCGGAAAAACACACAAAAGAGGGCAATGCGGAGCACACACGGGTTGTAT GATGTTCACCGCCACGAGCGAACACGGGCCGATAAACAATGTGCACATAC ATCTGTCTAGAAAGTTGGAGGTGCACCACACCGAGGGTACAAGGGTTATT TTTCCTGTGAGAGCCAATGGTGCTTGGCCGCGCTGTGTGTGGCCAACAGC ACTACCGAAGCAGTGAGCGCCTCCTTACAGGGCTCGTATACCTATCTAGA AAGAACGCGCAACGATTGATCGGGCAAGAAGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig857:5510..9744-

>mRNA_Ecto-sp13_S_contig857.19979.1 ID=mRNA_Ecto-sp13_S_contig857.19979.1|Name=mRNA_Ecto-sp13_S_contig857.19979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig857:5510..9744- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCAGACGGCAGGGGAGGAGGACGAGGAAAGCCAAGAGGACGAGGA
CGAAGTGGAGGACGAGGGGATGATGACCGGCGGCGAGGAGGATGAAGAGC
AAGAAGTGGAGGAGGTCGAACCTGTTCTATACGACGAGAAGGCCGTGGAG
TGGATGATGCAGCAGCTGTGCATGTATCAGACGCGCACGGCTTTGATCTC
AAACCCTCTGGCAGAAAAGGGCTACAAACTGAGGGAGATTGTACCGTCGC
CCCGAGGGCTTCTCTGTGCGGTCAGCACGGAGGAGCGGCGCATGGACTGT
CGGATGTATGTGGAAGCAGAGGTTGGCAAGAAGGCGATGTCACGTTTGTG
CCCCCAGGTGGTGGCGCCTTGCAAATGCAAGGGTACGCAGAAGTGGATTA
GTTTTTCGGCGCTGAACTCGGAGAGAAGAAAGGAGGCCACCAAATGGAAG
AACTGTCCCACGTGCCAGGGTCCCATCGACTATGCGCTGTACGAGGCGTA
CGGCGGTGGCGCAGGGAAAGCCGTTTCAGCGATACTCAACAATTCGAGAG
CAACACGAATAGCGATTGGCGTTCTCGCGACCATGGTGTTGTGGCTTCTC
AGCCCCCTGCTCCACTTGCTGATCGTACGCGTGCTGACGAGCGGGGTGTT
GTGGAAGAACTACCACCGCCTCACGTTCGTCGTGAACCTCCCGCTGCCGC
TCCAGATCATGGGCATCCGGTTCCTCATGACGTGGACCAATGATCAGCTG
CTCTTGGTCGAAAGCATGGTGCGACAGTCTCTGACCGACATAGAAAGCCA
GATCCTGGAATCAAGACTGCCAGTGACGGTAGAGGTTCGGGAGGACGGGG
ATGAGGTTGCTGTGCCGTATCGGAAGCCGTGA
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