mRNA_Ecto-sp13_S_contig857.19979.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: D7G587_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G587_ECTSI) HSP 1 Score: 471 bits (1211), Expect = 4.990e-162 Identity = 240/255 (94.12%), Postives = 245/255 (96.08%), Query Frame = 1
Query: 115 VEPVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGDEVAVPYRKP 879
VEPVLYDEKAVEWMM QLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKK VVAPCKCKGTQKWISFSALNSERRKEA KWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATR+AIGVLATMVLWLLSPLLH+LIVRVLTSGVLWKNYHRLTF+VNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIES+ILESRLPVTVEVREDGDE+AVPYRKP
Sbjct: 37 VEPVLYDEKAVEWMMHQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKK--------VVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRVAIGVLATMVLWLLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTVEVREDGDEIAVPYRKP 283
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE) HSP 1 Score: 465 bits (1197), Expect = 3.010e-158 Identity = 240/257 (93.39%), Postives = 244/257 (94.94%), Query Frame = 1
Query: 109 EEVEPVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGDEVAVPYRKP 879
EEVE VLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCA+STEERRMDCRMYVEAEV VAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTF+VNLPLPLQIMGIRFLMTWTNDQLLLVESM+RQSLTDIES+ILESRLPVTVEVREDGDEVAVPYRKP
Sbjct: 146 EEVESVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCALSTEERRMDCRMYVEAEV------------VAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMLRQSLTDIESRILESRLPVTVEVREDGDEVAVPYRKP 390
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A836CP79_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP79_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.900e-52 Identity = 103/237 (43.46%), Postives = 143/237 (60.34%), Query Frame = 1
Query: 133 DEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVRE 843
D++ EW+MQQ MYQTR AL+S L +KGY L+ ++P P GL+CA ST+E + CR+Y+E E G K VVAPC+CKG+Q+WI+ ALN +RR+E KW CPTCQ IDY+LYEA+ G + +A+LNN A R A+ + + LI+RV+ S V+W N+ R+ V LPL I+G ++L +E VR LT++ES ++E LP TV E
Sbjct: 73 DKEMAEWIMQQASMYQTRVALLSVELDKKGYGLKGVIPQPPGLICAKSTKEHPLRCRVYMEPEEGSK--------VVAPCRCKGSQRWIAIRALNQQRRREPLKWSKCPTCQAHIDYSLYEAHMAGLDRVPTAVLNNRGAGRAALAXXXXXXXXXXALIFQGLIIRVVISKVVWGNWDRIQGVWGQSLPLYILGFQWLRKRAAAAFARLEEWVRGELTEVESAVMERTLPETVSAAE 301
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A7S3XMD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMD3_HETAK) HSP 1 Score: 158 bits (400), Expect = 1.640e-40 Identity = 103/252 (40.87%), Postives = 139/252 (55.16%), Query Frame = 1
Query: 109 EEVEPVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYK--LREIVPSPRG--LLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGD 852
+E E YD+ W++ Q+ +Y RTAL++ L + G+ L IV RG L A+STEE+ M CR+Y EAE G K VVAPCKCKGTQKWI +SALN + R E K+KNC TC+ PIDY LY ++ G+ + +SA+L + + LL LLH L+ R L S LW+NYHR VV PLPL+I ++ + +R L + ES +++ LPVTV DGD
Sbjct: 71 DEEELTSYDQDTALWLLNQMHVYHARTALLAKELRKTGHLTGLAAIVQEERGNKLDIALSTEEKPMPCRIYYEAEAGSK--------VVAPCKCKGTQKWIQWSALNQQWRNEPHKFKNCNTCKTPIDYKLYYSFAAGSTQWLSALLERPARLQALVAAGLAGGAALLGLLLHGLVARALLSAALWRNYHRALGVVYAPLPLKIFVLQLTYKPVLKSFDRLVKRLRDRLVEWESALVQQALPVTVN--GDGD 312
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: W7TIY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIY3_9STRA) HSP 1 Score: 101 bits (251), Expect = 2.680e-19 Identity = 79/251 (31.47%), Postives = 126/251 (50.20%), Query Frame = 1
Query: 136 EKAVEWMMQQLCMYQTRTALISNPLAEK-----------GYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMV---LWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVRED 846
E+ W+ Q+ YQ AL + L ++ G+K E P ++ A +CR++ E ++G K +VAPC C+GT KW+ F+ +N RR++ + C TC IDY Y+ +G + VS L+++ R + LA+ V + + PL +L++RVLTS + W+ + VV PLPL+I+ +++ L E VR++L + ES +LE LPVTV V ED
Sbjct: 199 EEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDLGAK--------LVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLL--LASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV-VAED 435
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A4D9D8S7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8S7_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 7.040e-19 Identity = 73/224 (32.59%), Postives = 118/224 (52.68%), Query Frame = 1
Query: 184 RTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMV---LWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVRED 846
R A++ + + G+K E P ++ A +CR++ E ++G K +VAPC C+GT KW+ F+ +N RR++ + C TC IDY Y+ +G + VS L+++ R + LA+ V + + PL +L++RVLTS + W+ + VV PLPL+I+ +++ L E VR++L + ES +LE LPVTV V ED
Sbjct: 11 RHAVVGDTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDMGAK--------LVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLL--LASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV-VAED 220
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A7S0Y6J6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y6J6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.410e-10 Identity = 66/258 (25.58%), Postives = 125/258 (48.45%), Query Frame = 1
Query: 136 EKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREI--VPSPRGLL--------CAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATK----WKNCPTCQ----GPID-YALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEVREDGD 852
+K + M+Q + Q R +S LA++ + + V +P G + CA+STE C + E E G K +V P + T KWI+ +ALN RR + +K W + + GP Y+L + + G G +S +L+ +R + + +G++ ++ L P++ +L+ R L S LW + V++ LP +++ ++ + ++ + S+++ L D+E QILE +P+T+ + D
Sbjct: 117 DKLQAYRMKQQVLLQLRATFLSEALAKRSLPIPSLKDVSTPDGKVPPKKVDWDCAMSTEADPKHCLISYEPEPGSK--------LVVPTELASTDKWITLAALNRLRRDDPSKVEPMWSDRYAIRSSWFGPNSRYSLLQ-HVGPKGVVLSTLLDGNRLSTV-VGLVLLFLVVQLMPVIEILVNRFLVSSFLWSRWISWYRYVHIGLPFKLLILQTVYSYVAKGFAALVSVIKDKLVDLECQILEETIPLTMGEGSEDD 364
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: K0T0A2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0A2_THAOC) HSP 1 Score: 65.9 bits (159), Expect = 1.030e-7 Identity = 72/258 (27.91%), Postives = 122/258 (47.29%), Query Frame = 1
Query: 136 EKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREI--VPSPRGLL--------CAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPI---------DYALYEAYGGGAGKAVSAIL---NNSRATR--IAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEV 837
EK +++ Q +YQ R+ ++ LA +G L I V +P G CA+ST+E C +AE K VVAP GT +WIS +ALN RR + TK + Q + +++L + + G G VS++L N A R + + VL+ ++L++ PL+ + R+L S W + + PL+++ +++ +E+ VR+ + D+E +ILE +P+TV V
Sbjct: 234 EKVLKFRTDQQLLYQLRSTYLTEMLAARGVPLPTIISVSTPDGEKPPEKVDWDCALSTDEEPKSCLYSFDAEPDTK--------VVAPL---GTDQWISLTALNRLRRTDPTKVEPMWHSQYGVLQSWFADSSEFSLLQ-HVGIKGFFVSSVLLDGGNGMALRSLLVLSVLSLLILFM--PLIEYTVQRILVSAPFWNRWTFWGRIARAGFPLKLLIGQYVWKAVALAFRKLENEVREFVVDLECEILEDSVPITVGV 477
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: B8BYG1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYG1_THAPS) HSP 1 Score: 63.9 bits (154), Expect = 2.770e-7 Identity = 71/270 (26.30%), Postives = 115/270 (42.59%), Query Frame = 1
Query: 139 KAVEWMMQQLCMYQTRTALISNPLAEKGYKLREI----------VPSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPI---------DYALYEAYGGGAGKAVSAIL---NNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTV----------EVREDGD 852
K +++ +Q +YQ R+ +S LA +G + + VP CA+ T + C +AE K VVAP GT +WIS SALN RR + TK + + I +Y++ + Y G G +S++L N R + + L L+ PLL +I R++ S W + + PL+++ + +ES VR+ D+E +ILE +P+TV E R+DG+
Sbjct: 103 KLLKYRTEQQLLYQLRSTYLSEMLASRGVPVPTVLGVATAEGNKVPEMVDWDCAMCTYDEPKSCLYSFDAEPNTK--------VVAPI---GTDQWISLSALNRLRRTDPTKVEPMWHSRYAILQSWFSDTSEYSMLQ-YVGFKGFVISSVLLDGGNGMILRSLLILTVLSALVLVMPLLEFIIGRIIVSAPFWAQWQTWGRIARAGFPLKLLLGQLAWKGIASSFGKMESEVREFFVDMECEILEESVPLTVGPGSEVVDVEEERDDGE 360
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Match: A0A7S2PIB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PIB9_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.060e-7 Identity = 74/264 (28.03%), Postives = 115/264 (43.56%), Query Frame = 1
Query: 136 EKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIV----------PSPRGLLCAVSTEERRMDCRMYVEAEVGKKAMSRLCPQVVAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPI---------DYALYEAYGGGAGKAVSAIL---NNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFVVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESQILESRLPVTVEV--REDGDE 855
EK ++ +Q +YQ R+ +S LA +G L I P CA+ TEE C +AE K VVAP GT +WIS SALN RR + TK + + I ++++ + + G G VS++L N R + + V+ L PLL ++ R++ S W + VV PL+++ + +E+ VR+ D+E +ILE +P+TV V E+ DE
Sbjct: 110 EKLSKYRTEQQILYQIRSTYLSEMLALRGVPLPTITSVSTADGDKPPEKVDWDCAMCTEEDPKSCLYSFDAEPNTK--------VVAPL---GTDQWISLSALNRLRRTDPTKVEPMWHSRYSILKSWFADESEFSMLQ-HVGVKGFLVSSVLLDGGNGLVLRSLLIMTVLSVIITLMPLLEFIVGRIIVSAPFWAQWTTWGRVVRAGFPLKLLLGQLAWKGVATTFSKLENNVREYFVDMECEILEESVPLTVGVDSMEEEDE 361 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig857.19979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig857.19979.1 >prot_Ecto-sp13_S_contig857.19979.1 ID=prot_Ecto-sp13_S_contig857.19979.1|Name=mRNA_Ecto-sp13_S_contig857.19979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp MRQTAGEEDEESQEDEDEVEDEGMMTGGEEDEEQEVEEVEPVLYDEKAVEback to top mRNA from alignment at Ecto-sp13_S_contig857:5510..9744- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig857.19979.1 ID=mRNA_Ecto-sp13_S_contig857.19979.1|Name=mRNA_Ecto-sp13_S_contig857.19979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig857:5510..9744- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig857:5510..9744- >mRNA_Ecto-sp13_S_contig857.19979.1 ID=mRNA_Ecto-sp13_S_contig857.19979.1|Name=mRNA_Ecto-sp13_S_contig857.19979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig857:5510..9744- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |