mRNA_Ecto-sp13_S_contig857.19977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig857.19977.1
Unique NamemRNA_Ecto-sp13_S_contig857.19977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig857.19977.1 vs. uniprot
Match: D7G585_ECTSI (MCU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G585_ECTSI)

HSP 1 Score: 528 bits (1359), Expect = 6.810e-177
Identity = 291/353 (82.44%), Postives = 306/353 (86.69%), Query Frame = 1
Query:  421 AQARKDRCSRARKTARRETAAADSQLISLARRVEKLQRTLNDERASRQSAESKHHQAKSTTIRISRYLDSILNVNQELVAAGTPSSKTPTARQPVPRALGELQRKQSISDSYATPRQNSALEGDGIDIRAAVNEALSVGRTGGDPVPSLTALYERIGFSAMQGDNSHHGGTPSLPTSPSRARVGNAAEAYRFRDVHDGEDYGRQRLVEPTAVGGFFAEDDTEVLESSRRQASGHQVDNRGSRPANGRKHHGTGNAFVGGGVTTKGYSFASSPLVRPTSAAERSPEVVKRLEALASQLERERSHVEDWYKDVVHRA--SPCVQEEGTDADLDARSLTEAIICCLQEKSQQLDVV 1473
            AQARKDRCSRARKTARRETAAADSQL SLARR+EKLQRTL+DERASRQSAE KHH+AKSTTIRISRYLDSILNVNQELVAAGT SS TPTA QPVPRALGELQRKQSI DSYATPR+N ALE DGIDIRAAV EA  VGRTGGDPVPSLTALYERIGFSAMQG++ HHGGTPSLPTSP RARVGN AEAYRFRDV DGEDYGRQRLVEPTAVGGFFAEDD EVLESSRRQAS HQVD+ GSR ANG KHHGTGNAFVGGGVT KGYSFA+SPLVRPTSAAERSPEV+KRLEALASQLERERS VE WYKDVVHR+  + C      D  + A    E +   + E SQ+L  V
Sbjct:    6 AQARKDRCSRARKTARRETAAADSQLTSLARRLEKLQRTLDDERASRQSAELKHHRAKSTTIRISRYLDSILNVNQELVAAGTSSSLTPTAGQPVPRALGELQRKQSIRDSYATPRRNPALEDDGIDIRAAVKEAYCVGRTGGDPVPSLTALYERIGFSAMQGEDGHHGGTPSLPTSPRRARVGNTAEAYRFRDVDDGEDYGRQRLVEPTAVGGFFAEDDAEVLESSRRQASAHQVDDGGSRSANGGKHHGTGNAFVGGGVTAKGYSFANSPLVRPTSAAERSPEVMKRLEALASQLERERSDVEQWYKDVVHRSPHAHCGPSPPHDRQVPACKRRELMRILMPEASQKLYTV 358          
BLAST of mRNA_Ecto-sp13_S_contig857.19977.1 vs. uniprot
Match: A0A6H5KP00_9PHAE (MCU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP00_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 1.520e-136
Identity = 228/282 (80.85%), Postives = 236/282 (83.69%), Query Frame = 1
Query:  517 VEKLQRTLNDERASRQSAESKHHQAKSTTIRISRYLDSILNVNQELVAAGTPSSKTPTARQPVPRALGELQRKQSISDSYATPRQNSALEGDGIDIRAAVNEALSVGRTGGDPVPSLTALYERIGFSAMQGDNSHHGGTPSLPTSPSRARVGNAAEAYRFRDVHDGEDYGRQRLVEPTAVGGFFAEDDTEVLESSRRQASGHQVDNRGSRPANGRKHHGTGNAFVGGGVTTKGYSFASSPLVRPTSAAERSPEVVKRLEALASQLERERSHVEDWYKDVVHR 1362
            ++KLQRTLNDER+SRQS E KHH+AKSTTIRI RYLDSILNVNQELVAAGTPSS TPTARQPVPRALGELQRKQSI DSYATPRQNSALEGDGIDIRAAVNEAL VGRTGGDPVPSL ALYERIGFSA+QG++ HHGG PSLPTSP RARVGNAAEAYR R VHDGEDYGRQRLVEPTA GG                         GSRPANG KHHG GNAFVGG V  KGYSFA+SPLVRPTSAAERSPEV KRLEALASQLERERS VE WYKDVVHR
Sbjct:  100 LQKLQRTLNDERSSRQSTEFKHHRAKSTTIRIGRYLDSILNVNQELVAAGTPSSLTPTARQPVPRALGELQRKQSIRDSYATPRQNSALEGDGIDIRAAVNEALGVGRTGGDPVPSLAALYERIGFSAIQGEDRHHGGAPSLPTSPRRARVGNAAEAYRSRYVHDGEDYGRQRLVEPTAAGGXXXXXXXXXXXXXXXXXXXXXXXXGGSRPANGGKHHGIGNAFVGGAVAAKGYSFANSPLVRPTSAAERSPEVAKRLEALASQLERERSDVEQWYKDVVHR 381          
BLAST of mRNA_Ecto-sp13_S_contig857.19977.1 vs. uniprot
Match: A0A7R9YA16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA16_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.930e-14
Identity = 73/251 (29.08%), Postives = 129/251 (51.39%), Query Frame = 1
Query:    1 MDELQSSRAILAALRGLQDKVRRLENERTQAVEEVQTFKDELVQRGEDFKHAQELQNLTIQEESAASRLSYERLLAEKRLVDNRLEETKASGPKKGELKRELQKACETARDRGQDSHVAQLAAEAKASFLERRVNECEHIAQARKDRCSRARKTARRETAAADSQLISLARRVEKLQRTLNDERASRQSAESKHHQAKSTTIRISRYLDSILNVNQELVAAGTPSSKTPTARQPVPRALGELQRKQSISDS 753
            M +   SRA+L+ALR LQDK++RLE ER++A++EV   K +L +     K ++EL+ LT  E+  ASRL+ ER+ AEK++V+ RL + +       E K  L+K  +  R    +S +A+  A+   S ++  V E E      K + + A +   +E    D + I L   ++K++  L +E+  R  A ++         R+  +L  ++ +N++LV +        T   P  R   + +R++   D+
Sbjct:  222 MSDSSGSRAVLSALRALQDKIKRLEGERSKALDEVNALKQQLEEAEASAKRSRELEKLTNSEQVHASRLANERVTAEKKVVEMRLSKAE-------EHKASLRKEIDALRKAASESEIARRTADGNLSVVQGHVRELEGELDDMKAQLAVAHEELAKERDERDQREIELGVVIQKIEEQLREEKTMRCEAVTEKE-------RLDEFLKGVVAINEDLVRSIAKGDNAGTGALPKARRGRKTKRRKEPLDT 458          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig857.19977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G585_ECTSI6.810e-17782.44MCU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KP00_9PHAE1.520e-13680.85MCU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9YA16_9STRA6.930e-1429.08Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig857contigEcto-sp13_S_contig857:189..4053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score539.7
Seed ortholog evalue1.6e-150
Seed eggNOG ortholog2880.D7G585
Preferred nameCCDC109B
Model size1632
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K14831,ko:K20858
KEGG TC1.A.77.1
KEGG ReactionR05000,R05616,R07273
KEGG Pathwayko00130,ko01100,ko01110,ko04020,ko04218,ko04621,map00130,map01100,map01110,map04020,map04218,map04621
KEGG ModuleM00128
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0008016,GO:0008150,GO:0008200,GO:0008324,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015085,GO:0015267,GO:0015291,GO:0015292,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0019222,GO:0019722,GO:0019725,GO:0019855,GO:0019866,GO:0019932,GO:0022607,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030029,GO:0030036,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033500,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0036444,GO:0042592,GO:0042593,GO:0042802,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044057,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046883,GO:0046887,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048729,GO:0048856,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051560,GO:0051561,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060026,GO:0060027,GO:0060401,GO:0060429,GO:0061041,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072375,GO:0072503,GO:0072507,GO:0072511,GO:0080134,GO:0090087,GO:0090276,GO:0090277,GO:0097435,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:0099106,GO:1902495,GO:1903034,GO:1903426,GO:1903522,GO:1903530,GO:1903532,GO:1904951,GO:1990246,GO:1990351,GO:1990542,GO:2000377
Exons7
EggNOG free text desc.uniporter activity
EggNOG OGsKOG2966@1,KOG2966@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006605.1
EC2.5.1.39
Cds size1632
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko02000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig857.19977.1prot_Ecto-sp13_S_contig857.19977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig857 189..4053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.0339088-CDS-Ecto-sp13_S_contig857:188..3741681464128.0339088-CDS-Ecto-sp13_S_contig857:188..374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 189..374 -
1681464128.0534759-CDS-Ecto-sp13_S_contig857:742..8261681464128.0534759-CDS-Ecto-sp13_S_contig857:742..826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 743..826 -
1681464128.065115-CDS-Ecto-sp13_S_contig857:1229..20691681464128.065115-CDS-Ecto-sp13_S_contig857:1229..2069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 1230..2069 -
1681464128.0767505-CDS-Ecto-sp13_S_contig857:2256..23581681464128.0767505-CDS-Ecto-sp13_S_contig857:2256..2358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 2257..2358 -
1681464128.087715-CDS-Ecto-sp13_S_contig857:2925..30571681464128.087715-CDS-Ecto-sp13_S_contig857:2925..3057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 2926..3057 -
1681464128.1107218-CDS-Ecto-sp13_S_contig857:3437..36501681464128.1107218-CDS-Ecto-sp13_S_contig857:3437..3650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 3438..3650 -
1681464128.1353443-CDS-Ecto-sp13_S_contig857:3978..40531681464128.1353443-CDS-Ecto-sp13_S_contig857:3978..4053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig857 3979..4053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig857.19977.1

>prot_Ecto-sp13_S_contig857.19977.1 ID=prot_Ecto-sp13_S_contig857.19977.1|Name=mRNA_Ecto-sp13_S_contig857.19977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=544bp
MDELQSSRAILAALRGLQDKVRRLENERTQAVEEVQTFKDELVQRGEDFK
HAQELQNLTIQEESAASRLSYERLLAEKRLVDNRLEETKASGPKKGELKR
ELQKACETARDRGQDSHVAQLAAEAKASFLERRVNECEHIAQARKDRCSR
ARKTARRETAAADSQLISLARRVEKLQRTLNDERASRQSAESKHHQAKST
TIRISRYLDSILNVNQELVAAGTPSSKTPTARQPVPRALGELQRKQSISD
SYATPRQNSALEGDGIDIRAAVNEALSVGRTGGDPVPSLTALYERIGFSA
MQGDNSHHGGTPSLPTSPSRARVGNAAEAYRFRDVHDGEDYGRQRLVEPT
AVGGFFAEDDTEVLESSRRQASGHQVDNRGSRPANGRKHHGTGNAFVGGG
VTTKGYSFASSPLVRPTSAAERSPEVVKRLEALASQLERERSHVEDWYKD
VVHRASPCVQEEGTDADLDARSLTEAIICCLQEKSQQLDVVRESLKAFKA
SPPTPAITSPTLCPRKIAALNVLQGLCHDVQAIAREDGGLCAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig857:189..4053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig857.19977.1 ID=mRNA_Ecto-sp13_S_contig857.19977.1|Name=mRNA_Ecto-sp13_S_contig857.19977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig857:189..4053- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGCTTCAAAGCAGTAGGGCTATTCTTGCGGCACTAAGAGGTCT CCAGGACAAAGTTAGGCGCCTGGAGGTGAGCGTAACTGAATGAAGTTGAC CGCCGCGCTAGTTCGGCTGAACCAGCTACACATGAGATCTTTACCAGCTC GTGTAATTAATTAACGGTCAATATAGATCCAACAGAGACTTTGTGCTGTA GGGAGACCAAGATAAGGACATGCGGACGTTGTGACTGGGATATGGCAGAA TGCGCTTTATTTATAGGTTGCAAACTTGTGGCCGCGAAAAGGAATGTATG TCACGACGAACAAACGCCGACGAAGAGAGCGCAAACGTAAAAGTTGTGCT CACATATTCGCACATGTGGGACACTTGCCGTCGTCGCTGTCTCGCCGTAC CAGAACGAGCGTACGCAGGCTGTCGAGGAAGTGCAAACATTCAAGGATGA GTTGGTGCAGCGCGGAGAAGATTTCAAGCATGCGCAGGAGCTACAGAACC TCACAATCCAGGAGGAAAGTGCAGCGTCTCGTCTGTCATACGAACGACTT CTCGCCGAGAAGAGACTGGTTGACAACCGTCTAGAGGAGACCAAGGCGAG TGGACCGAAGAAGGGGGTGCAAAATAGAGACTCCGGAAGCAAGCGACAAC AACCTATCTTTGCTGCGATGTGGACGTAGTGTACGTGGCAAAGGCATGTA CTCATGGGCTTCCAGATGAAAAAAGCTCTCTCAGTAGACTAATACGCCGG GCCCGTCGATGAACATGATGAAATGACAGGAGTACAATATACAAATGGAG ATGCATGTCATGCAAACCAAGCGTGCACCGGCAAAACCATGTGATGCTCC TCTATATGCTGGTGCTGACGAAGGACACATACTTCGCATGTCACAACCCG CGTGTGCAGTTTCCGCATTCCACGAAAAGCACATTCATCCCTGGTGGATT GTTGCTCGCGTTATGTCATGTTTTCCTACCACTTGAAACATCTCAGGAGT TGAAGCGGGAGCTCCAAAAAGCATGTGAAACCGCGCGCGATCGTGGGCAA GACTCACATGTGGCACAATTGGCAGCGGAAGCTAAGGCTTCTTTTTTGGA GAGGCGCGTCAACGAATGCGAACACATTGTGAGACGGTTTTTTTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNTAAATGTGGTCGTCACGCAAAAGAAT ATTGAGTACAATACGGTTTTTTGGCAATATCTATCTACGTAAGGGTGAAC ATTGGCGCCCAGGATACACGGTACTACCCTACGTAGCCTTAGCGTCGAAA CCGCAGGGTGAGTGAGTTGAACGGTGATGGCGTGGAGTGGAAAACAGGCA GCTATCATACCTGATCAACCTACGATCGTCTTGAAAACGAAAGAAGCACC AGCTGCGCGTTTCAGCCCATGCTCTTGGTCGCGGTGAACAACCCAATATT ACTATAAACACACGACTACATGGGGACCATTCTTCAGCACAACGACGTCT ATTCCTCCCTTTCCTTGGTCGCATATCTATCATCCAGAGAACGAGCGTCT ATCTGCGCAGTCCAATGAAGTTTTTGAGTGTTCGACTGTGGATCGTAGTA AACTTGACGTCTTGACATTGAGTGCTTTTTTGCCCACGCTTGCAGGCCCA GGCTAGGAAAGACCGATGCTCGCGAGCACGGAAAACCGCCCGTCGGGAAA CAGCCGCGGCAGATTCTCAGCTGATCAGTTTGGCCAGAAGGGTGGAGGTG AGAAGAGAAAAGCGCCAAGATCCAAACGGTTGCAAAGCAGCAAGTAGCGT GGAGAGTGTACGCCCGTACGACAAGGTGACTCTCCGTCTCGAGACGCCCT CGACGCAGCGAGGTTCCTTGCGAAACGCAGTCAGTAAATTCCTCCCTCCC TTTGTTTCGTCTTTGTCGCTGTGAACACTTGCAGAAGCTCCAGCGTACAC TTAACGACGAGCGTGCCTCTCGCCAGTCCGCCGAATCCAAGCACCATCAA GCCAAAAGTACCACGATCCGAATAAGCCGGTACCTAGACTCAATCCTCAA TGTCAACCAAGAGCTCGTAGCAGCGGGGACGCCCTCGTCCAAAACGCCAA CAGCGAGGCAACCTGTACCGAGAGCGCTAGGCGAGCTCCAGCGAAAACAA AGCATCAGCGACAGCTACGCTACCCCTCGGCAGAACTCAGCATTGGAAGG CGATGGGATTGACATTCGCGCCGCTGTGAACGAGGCACTTAGCGTTGGTC GTACTGGCGGAGATCCTGTTCCATCTCTCACGGCACTGTACGAGCGTATT GGTTTCAGCGCCATGCAAGGCGATAACAGTCACCATGGTGGCACGCCAAG TTTGCCTACAAGCCCAAGTCGAGCCAGGGTCGGCAACGCTGCCGAGGCGT ATAGATTTCGGGATGTCCACGACGGGGAAGACTACGGTCGCCAGCGGCTT GTAGAACCCACAGCTGTAGGTGGTTTCTTCGCTGAGGATGACACAGAGGT TTTGGAGTCGTCAAGACGGCAGGCTAGCGGTCACCAAGTCGATAACCGAG GGTCCAGACCGGCCAATGGCAGAAAACATCACGGAACTGGGAATGCGTTT GTCGGTGGTGGAGTTACAACCAAGGGTTATTCCTTTGCTAGCTCGCCATT AGTGAGGCCGACATCTGCTGCCGAGAGGTCTCCCGAGGTTGTGAAACGGT TGGAGGCGTTGGCGTCACAGCTGGAGAGGGAGAGGTCGCATGTGGAGGAT TGGTACAAGGACGTGGTGCACAGGGTAGGTGGTAGTTGTCGGCCCCCATC GCATGGTGTGGAAAAAATTTCGTCAGGTAGCTCGAATGATCTCCATGGTT GGTGCCTCCGGTGGTGCACATAGTAGAAGTAGGATAGCTTGACAACCTGG GGTGCACATACTACGGTTGAGCTTCACTTAACTCGTGTGGTTGGTGTTTG TAGTCCACAAGGGGCCAGAGCAACCTTCACTGTAGATTTGACGGAACCTC ACTCGAAGGGTTTCGCTGTAGGCGTAGGCTACTGGAATGCTTTTCAAAGC CCCTTTTGCAATCAGCTGGTACAGTTGTAACTGCGCTGTGGTCGTGAAAT CATTCTGATACCTCCCCACATGACGTTGTTCAACAGTCACCCCATACTCA TTGTGGTCCCTCTTCGCCGTATGGTAGGCAAGTCCCTGCGTGCAAGAGGA GGGGACTGATGCGGATCTTGATGCCCGAAGCCTCACAGAAGCTATAATAT GCTGTCTTCAAGTGAGTTTTCCTCCGGCATGTCAAAAACTTGCCCACTTA ATGCACAAGATAATGACCGTACGAGCTGTATCATAATGAAGAAATTTTTC GGAAAAGTTCAAATATTCGTCACGACGGATACAGTGTTGTCACGCCCGTG TAGATATCATTCAATGCTGTATGTTGTTTCTGCTTCCAGAGTATGGCTGG TGTACAAGGTTCAATCCACAATTTAACTGAAGCTGCTCGATCAATGGCGA ATGAATACGATTCCCGGAGTGCGATCATTCGTTTGATCCCTACCGGTCAC CAAGGATGCAGGATATCATGTAGTTCAAGGTAAGAAGTTGACTTCGTGCA TCCGACCACTTCCCCTCCCCGTTCGACAGGAAAAGTCCCAGCAGCTGGAC GTCGTTCGCGAGAGCTTGAAAGCGTTCAAAGCCTCTCCACCGACGCCGGC AATCACAAGTCCCACGTTGTGTCCCCGCAAGATCGCTGCATTGAATGTTC TCCAAGGATTATGCCATGACGTGCAAGCGATAGCACGCGAAGACGGCGGG CTCTGTGCGGCATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig857:189..4053-

>mRNA_Ecto-sp13_S_contig857.19977.1 ID=mRNA_Ecto-sp13_S_contig857.19977.1|Name=mRNA_Ecto-sp13_S_contig857.19977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig857:189..4053- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGCTTCAAAGCAGTAGGGCTATTCTTGCGGCACTAAGAGGTCT
CCAGGACAAAGTTAGGCGCCTGGAGAACGAGCGTACGCAGGCTGTCGAGG
AAGTGCAAACATTCAAGGATGAGTTGGTGCAGCGCGGAGAAGATTTCAAG
CATGCGCAGGAGCTACAGAACCTCACAATCCAGGAGGAAAGTGCAGCGTC
TCGTCTGTCATACGAACGACTTCTCGCCGAGAAGAGACTGGTTGACAACC
GTCTAGAGGAGACCAAGGCGAGTGGACCGAAGAAGGGGGAGTTGAAGCGG
GAGCTCCAAAAAGCATGTGAAACCGCGCGCGATCGTGGGCAAGACTCACA
TGTGGCACAATTGGCAGCGGAAGCTAAGGCTTCTTTTTTGGAGAGGCGCG
TCAACGAATGCGAACACATTGCCCAGGCTAGGAAAGACCGATGCTCGCGA
GCACGGAAAACCGCCCGTCGGGAAACAGCCGCGGCAGATTCTCAGCTGAT
CAGTTTGGCCAGAAGGGTGGAGAAGCTCCAGCGTACACTTAACGACGAGC
GTGCCTCTCGCCAGTCCGCCGAATCCAAGCACCATCAAGCCAAAAGTACC
ACGATCCGAATAAGCCGGTACCTAGACTCAATCCTCAATGTCAACCAAGA
GCTCGTAGCAGCGGGGACGCCCTCGTCCAAAACGCCAACAGCGAGGCAAC
CTGTACCGAGAGCGCTAGGCGAGCTCCAGCGAAAACAAAGCATCAGCGAC
AGCTACGCTACCCCTCGGCAGAACTCAGCATTGGAAGGCGATGGGATTGA
CATTCGCGCCGCTGTGAACGAGGCACTTAGCGTTGGTCGTACTGGCGGAG
ATCCTGTTCCATCTCTCACGGCACTGTACGAGCGTATTGGTTTCAGCGCC
ATGCAAGGCGATAACAGTCACCATGGTGGCACGCCAAGTTTGCCTACAAG
CCCAAGTCGAGCCAGGGTCGGCAACGCTGCCGAGGCGTATAGATTTCGGG
ATGTCCACGACGGGGAAGACTACGGTCGCCAGCGGCTTGTAGAACCCACA
GCTGTAGGTGGTTTCTTCGCTGAGGATGACACAGAGGTTTTGGAGTCGTC
AAGACGGCAGGCTAGCGGTCACCAAGTCGATAACCGAGGGTCCAGACCGG
CCAATGGCAGAAAACATCACGGAACTGGGAATGCGTTTGTCGGTGGTGGA
GTTACAACCAAGGGTTATTCCTTTGCTAGCTCGCCATTAGTGAGGCCGAC
ATCTGCTGCCGAGAGGTCTCCCGAGGTTGTGAAACGGTTGGAGGCGTTGG
CGTCACAGCTGGAGAGGGAGAGGTCGCATGTGGAGGATTGGTACAAGGAC
GTGGTGCACAGGGCAAGTCCCTGCGTGCAAGAGGAGGGGACTGATGCGGA
TCTTGATGCCCGAAGCCTCACAGAAGCTATAATATGCTGTCTTCAAGAAA
AGTCCCAGCAGCTGGACGTCGTTCGCGAGAGCTTGAAAGCGTTCAAAGCC
TCTCCACCGACGCCGGCAATCACAAGTCCCACGTTGTGTCCCCGCAAGAT
CGCTGCATTGAATGTTCTCCAAGGATTATGCCATGACGTGCAAGCGATAG
CACGCGAAGACGGCGGGCTCTGTGCGGCATAG
back to top