mRNA_Ecto-sp13_S_contig8556.19960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8556.19960.1
Unique NamemRNA_Ecto-sp13_S_contig8556.19960.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 1092 bits (2825), Expect = 0.000e+0
Identity = 670/765 (87.58%), Postives = 674/765 (88.10%), Query Frame = 1 
Query:    1 RCALAWMQLEAVERADMLASPVMALALEALESPEACDDACELVTVSXXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACVYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYPMDDGGGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKGXXAAGTPSPPRPGFHARGSGGGGISSGRGWERAGGANGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTLDGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLLQWLEGLAASSTREALQEQQQRRYSGTSRNGTAGSCVDGSINSGGSGXXDXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLRGAGXXXXXXXXXXXXXXXXXXXXXXXASRGYVPADSGAVGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEERGGQAFMRDKGEDHV-GAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSSQLQSHRLLRHRPVAEGRGPPPGPAAPTAQPLPSERLAVSG----RGAGSAMFPWQAAGDDRPLSLEQQXXXXXXXXXXXXXXXXXXXXXXXPLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSSTGSTVEVEEVLQALVEGELRCLGSVLDRRREL 2280
            RCALAWMQLEAVERADMLASPVMALALEALESPEACDDACELVT+ XXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAAC YLPGILKPELGGHWSSLLQIMVGML HPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVR AC+VSMLRARYP DD GGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKG  AAGTPSPPRPGFH RGSGGGGI SGRGWERAGG NGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVT DGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLL+WLEGLAASSTREALQE                             XX XXXXXXXXXXXXXXXXXXXXXXXXXXRGG+WSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALL GAG                       A RGYVPA SG VGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEE GGQAFMRDKGEDHV GAVALSKLVSAAGPSLAAV SLPTHLLQRY GLSSQLQSHRLLR RPVAEGRGPPPGPAAP AQPLPSERLA SG    RG GSA FPWQAAG DRPLSLEQQ     XXXXXXXXXXXXXXXXXX LHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGS TGSTVEVEEVLQALVEGELR LGSVLDRRREL
Sbjct:  234 RCALAWMQLEAVERADMLASPVMALALEALESPEACDDACELVTIXXXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLNHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRRACKVSMLRARYPSDDCGGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKGGGAAGTPSPPRPGFHVRGSGGGGIFSGRGWERAGGVNGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTPDGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLLEWLEGLAASSTREALQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGDWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLGGAGTSGDPATTAAAAA----------AFRGYVPAGSGVVGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVVGAVALSKLVSAAGPSLAAVRSLPTHLLQRYHGLSSQLQSHRLLRPRPVAEGRGPPPGPAAPAAQPLPSERLAASGPAACRGTGSASFPWQAAGGDRPLSLEQQRRSAEXXXXXXXXXXXXXXXXXXXLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSGTGSTVEVEEVLQALVEGELRYLGSVLDRRREL 988
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 1016 bits (2627), Expect = 0.000e+0
Identity = 631/764 (82.59%), Postives = 643/764 (84.16%), Query Frame = 1 
Query:    1 RCALAWMQLEAVERADMLASPVMALALEALESPEACDDACELVTVSXXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACVYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYPMDDGGGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKGXXAAGTPSPPRPGFHARGSGGGGISSGRGWERAGGANGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTLDGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLLQWLEGLAASSTREALQEQQQRRYSGTSRNGTAGSCVDGSINSGGSGXXDXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLRGAGXXXXXXXXXXXXXXXXXXXXXXXASRGYVPADSGAVGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEERGGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSSQLQSHRLLRHRPVAEGRGPPPGPAAPTAQPLPSERLAVSG----RGAGSAMFPWQAAGDDRPLSLEQQXXXXXXXXXXXXXXXXXXXXXXXPLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSSTGSTVEVEEVLQALVEGELRCLGSVLDRRREL 2280
            RCALAWMQLEAVERADMLASPVM LA+EALESPEACDDACELV   XXXXXXXXXXX MLPRVLTRAQALANAPSEEVCRCLAMVFASAAC YLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYP D+ GGLGGMDEDSRDELEDFRDQVQ+LLQTLIMPAPPWEQNQQRSSSKG  AAGTPSPPRPGFHARGSG GGISSGRGWERAGG NGIG AMSPDNG GMYPGRRSSPSLSTAAA                        RSLGEDGAGM+MVLSPVQSGLL+WLEGLAASSTREALQ                              XX XXXXXXXXXXXXXXXXXXXXXXXXXX   +WSGVEVALRMLSAVTKAINLRDFCSPSPSS APALL GAG                       A R YVPAD G VGDGGRGTGATEALV+MLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEE GGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLS+QLQSHRLLR RPVAEGR PPPGP AP AQPLPSE+L V+G    RG GSA FPWQAAGDDRPLSLEQQ      XXXXXXXXXXXXXXXX PLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGS TGST+EVEEVL+ALVEGELRCLGSVLDRRREL
Sbjct:  240 RCALAWMQLEAVERADMLASPVMTLAVEALESPEACDDACELVXXXXXXXXXXXXXXXMLPRVLTRAQALANAPSEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYPSDESGGLGGMDEDSRDELEDFRDQVQDLLQTLIMPAPPWEQNQQRSSSKGGGAAGTPSPPRPGFHARGSGVGGISSGRGWERAGGVNGIGGAMSPDNGAGMYPGRRSSPSLSTAAAXXXXXXXXXXXXXXXXXXXXXXXXRSLGEDGAGMEMVLSPVQSGLLEWLEGLAASSTREALQXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWSGVEVALRMLSAVTKAINLRDFCSPSPSSPAPALLGGAGTNGDAATAAAA------------AFRVYVPADGGVVGDGGRGTGATEALVEMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSAQLQSHRLLRPRPVAEGRRPPPGPPAPAAQPLPSEQLTVAGPAACRGTGSASFPWQAAGDDRPLSLEQQRGSAEAXXXXXXXXXXXXXXXX-PLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSGTGSTLEVEEVLRALVEGELRCLGSVLDRRREL 989
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1R2_9PHAE0.000e+087.58Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FSA2_ECTSI0.000e+082.59Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8556contigEcto-sp13_S_contig8556:32..6223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1015.0
Seed ortholog evalue2e-293
Seed eggNOG ortholog2880.D7FSA2
Model size2502
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
Cds size2484
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8556.19960.1prot_Ecto-sp13_S_contig8556.19960.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8556 32..6205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464125.9474905-CDS-Ecto-sp13_S_contig8556:31..2521681464125.9474905-CDS-Ecto-sp13_S_contig8556:31..252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8556 32..252 -
1681464125.9597423-CDS-Ecto-sp13_S_contig8556:1762..23391681464125.9597423-CDS-Ecto-sp13_S_contig8556:1762..2339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8556 1763..2339 -
1681464125.9709606-CDS-Ecto-sp13_S_contig8556:2903..40191681464125.9709606-CDS-Ecto-sp13_S_contig8556:2903..4019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8556 2904..4019 -
1681464125.986648-CDS-Ecto-sp13_S_contig8556:4704..49591681464125.986648-CDS-Ecto-sp13_S_contig8556:4704..4959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8556 4705..4959 -
1681464126.0029233-CDS-Ecto-sp13_S_contig8556:5301..54631681464126.0029233-CDS-Ecto-sp13_S_contig8556:5301..5463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8556 5302..5463 -
1681464126.01763-CDS-Ecto-sp13_S_contig8556:6052..62051681464126.01763-CDS-Ecto-sp13_S_contig8556:6052..6205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8556 6053..6205 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464126.036705-UTR-Ecto-sp13_S_contig8556:6205..62231681464126.036705-UTR-Ecto-sp13_S_contig8556:6205..6223Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8556 6206..6223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8556.19960.1

>prot_Ecto-sp13_S_contig8556.19960.1 ID=prot_Ecto-sp13_S_contig8556.19960.1|Name=mRNA_Ecto-sp13_S_contig8556.19960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=828bp
MQLEAVERADMLASPVMALALEALESPEACDDACELVTVSLEAFTEPEAA
EEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACVYLPGILKPELGGHW
SSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEE
SVRHACRVSMLRARYPMDDGGGLGGMDEDSRDELEDFRDQVQELLQTLIM
PAPPWEQNQQRSSSKGGGAAGTPSPPRPGFHARGSGGGGISSGRGWERAG
GANGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTLDGSRRSNSDGGG
SASGRRRSLGEDGAGMDMVLSPVQSGLLQWLEGLAASSTREALQEQQQRR
YSGTSRNGTAGSCVDGSINSGGSGGADHAATAQAGGREEGGGALLDGAAG
GGGRGGNWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLRGAGTNS
DAATTAAAAAAAATATATAAASRGYVPADSGAVGDGGRGTGATEALVDML
PSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEERG
GQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSSQL
QSHRLLRHRPVAEGRGPPPGPAAPTAQPLPSERLAVSGRGAGSAMFPWQA
AGDDRPLSLEQQRRSAEAGGGGKAADAAAAAARPPPLHAGSLRLFLGSIC
RMLGEAPRAGAVLEQQRGGGSSTGSTVEVEEVLQALVEGELRCLGSVLDR
RRELAVVAAAAASPHAADEENRAMADVAKDSLSNLSLILGKTGPALDAPG
LVAKLCGFGEGSAASAGACGGGGGRGAG
back to top

mRNA from alignment at Ecto-sp13_S_contig8556:32..6223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8556.19960.1 ID=mRNA_Ecto-sp13_S_contig8556.19960.1|Name=mRNA_Ecto-sp13_S_contig8556.19960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8556:32..6223- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCGCCCTGGCGTGGATGCAGCTGGAGGCGGTGGAGAGGGCGGATAT
GTTGGCCTCCCCTGTCATGGCCCTGGCGCTGGAGGCCCTGGAGAGCCCGG
AGGCGTGCGACGATGCCTGCGAGCTCGTGACGGTTTCGCTGGAGGCTTTT
ACGGAACCGGAGGCTGCTGAGGTGTGTGTTTTGGGCCCCCATCCCTGCGT
TTGTGGGGGTATTAGAAACCGGCGATGCAAGTCTTGTCCGGGCCGTCTGT
TTTGTTGAGGGGGTGTGGGCCCCCCCCCCCCCCCCCCCCCCCCGGCTCTC
TGCTTGTTTCGATAACCATACGAAATAGTTAACAGACGTACCATCGGATT
CGAGGGATGGGCAAGTTTGCTTGCTTGTTTGCACCCACCCTTACAGTACT
CACGAACCCCGTATGAGAGAAAGACGGCGTACGCCTGAAGCAGACATGAA
CCCCGCATTAGAAAAAGACAGCTCACGCCTACAGCAGTGATGAAGCCCAT
ATTGGAAAGAGACAGCTTACGCCTACAGCAGTCATGAACCCCGTATTAGA
AAAAGACAGCTTACGCCTACAGCAGTCATGAACCCCGTATCAGGAAGGAC
GCATTGCTTGCTCTCATACTTGCAGCAGTCATGACGCCACTCCCGTCTGC
CTCTTGTCGCTCTCCCCCAGCGGGCTGCCGACAATGACGATAATCATCAT
GGTGGCCGCTCGATCTTGTTCTTGTATTCACGTTGTTTTATGTGTTTCTT
CTCCTGGCAGGAAATGTTGCCGAGGGTCCTAACCAGGGCGCAGGCCCTGG
CCAACGCTCCGTCGGAGGAAGTCTGCCGCTGCCTAGCGATGGTCTTCGCC
TCGGCGGCCTGCGTGTACCTACCGGGCATCCTCAAGCCTGAGCTGGGCGG
GCACTGGAGCTCCCTTCTGCAGGTACTGCTGTATTTTGAGCCAGCCGTGT
ACAGTACCTTCAAGTATCTCTATTTAGTGTAGAGATGGCATCATTGGGGA
AGGGGGAAAATAACCACAACGCTGTCTACGAAAACATGCTGCCGCTTCAG
TAAACATTTTTAAGCTCGTATTCACTACGGTTTCCAATACTGTACTGTGC
GTAGATCATGGTCGGCAAGCTGGAGCACCCCTCCCTAGAGACGGCATGAC
TGCAATAGGGTGGGCGAAGAGTTCCCACAACGCCGTCGTCGACCACATAC
TACTTCAGTTGCCATGTCGAACGCTGATCAACCGCTGTTCCTCATGCTGC
TGTACTGTGCGTAGATCATGGTCGGCATGCTGGAGCACCCCTCCCTGGAG
ATCGCCAGCCTTGCCCTCGAGTTCTGGGGGATGCTTGGGGAGCTGCTAAC
GGAAACGGCGGCGGGGGGACGGGGCCCGCGCAGCCCCCCCCTGGAGGAGT
CCGTTCGTCACGCCTGCAGGGTTTCTATGCTCCGCGCCCGCTACCCAATG
GATGACGGCGGCGGATTGGGGGGAATGGACGAGGACTCGAGGGATGAGCT
GGAAGACTTTAGAGATCAGGTGCATATGTACGGCAGTAGCCGTGGGCCCT
GACTTAGGCGGCTTAGTAGAAGCAAGGGGTGATTGGGATATGTAGAAGCG
TCATGCATGCATGCCTCATTTTCTTGTTTTTGTTGCATGCTATTGCCCTC
GGAGAGTATGGACGGAGTTGAGCGAAGATGTTAAAGCGTGCAGGTGTTGT
GAACTCGAGGGATTTTCGACAGCAGGTGCGCTATGTCAAAGGGGCGATTG
TCCCGTCCAGCAAACCAGGGGAACCGTGCGGCACCGTGCCTCCCACTGGC
TCTCCACCCCCTGTGGTCGTTGTGGTGTGCTCGAATCGAAAACTTTTGCT
GTTTCCTGGAAACGAGCCCATCTCTTCAGCCACAAGCCGTGCATGCCGGG
GGACACCGCCAGTCAGCGAAACATCAACCAACCCACATGCACGCGTGTAT
AATGCAACGATGGTGCAGCAGTCAATCAGTTGGCCAGTCGCCCGGCAGCT
GCTCCCTAACCCGCCCCAGATGTAACAACAGTGTCAACTACAAGGCGGTG
GATCAGCATTACTACAATAACAGTAACAGTGACAGCAACAACAACGACAA
CAACAGCAACAACAACAACAACAACAACAACCACAACAACAGTAACATTA
ACGATAACAACAGCAACAACAACAACAACCGCGACGATGTTCCGCCGCCA
CCAGGTGCAGGAGCTCCTGCAGACCCTCATCATGCCCGCACCCCCGTGGG
AGCAGAATCAGCAGCGGTCTTCCTCCAAGGGCGGCGGGGCTGCTGGGACC
CCGTCCCCTCCTAGGCCAGGCTTCCACGCTAGAGGAAGCGGGGGCGGCGG
CATTTCCAGCGGGCGGGGCTGGGAACGGGCGGGGGGGGCGAACGGTATCG
GGGCGGCGATGAGTCCTGACAACGGACCGGGCATGTACCCAGGGCGGCGT
TCTTCTCCTTCTCTGTCTACGGCGGCGGCGACGGCTGCGGTCACCCTTGA
CGGCAGCAGGAGGAGCAACAGCGACGGCGGTGGGAGTGCAAGCGGTCGTC
GCCGCAGCTTGGGGGAGGACGGGGCGGGGATGGACATGGTGCTGTCCCCG
GTGCAGAGCGGGCTTCTCCAGTGGCTGGAAGGGCTGGCCGCTTCCAGCAC
CCGCGAGGCCCTCCAGGAGCAGCAGCAACGGCGATACAGCGGCACGTCCA
GGAACGGCACCGCCGGCAGTTGCGTGGATGGCAGCATCAACAGCGGCGGC
AGCGGGGGAGCGGACCATGCCGCTACAGCCCAAGCGGGCGGAAGAGAAGA
AGGAGGAGGAGCGTTGTTGGACGGCGCGGCAGGTGGAGGGGGGCGGGGAG
GGAACTGGTCGGGAGTCGAGGTTGCGCTCCGCATGCTCAGCGCCGTGACG
AAGGCGATAAACCTACGCGACTTCTGCTCCCCGTCCCCCTCCTCCGCTGC
GCCGGCCCTGTTGAGAGGAGCGGGCACGAACAGTGATGCCGCAACCACAG
CCGCCGCCGCCGCCGCCGCCGCCACCGCCACCGCCACCGCCGCTGCGTCC
CGGGGATACGTCCCCGCGGACAGCGGCGCGGTCGGTGATGGTGGTCGAGG
AACGGGAGCCACGGAGGCGCTCGTGGATATGCTGCCGTCGCTGCCGCCGG
GCCGGAGGGAGTTGCAAAGATCCGCGGCGGTTTTGGTCGGGGGGCTGGCG
GCGTGGCTGGCGAGGAGGCCGAGGAGCCTGGAGCCGGCGCTGCAGTCGGT
GCTCGGGGTGCTGGGGCTGGAGGAGGAAAGGGGGGGGCAGGCGTTCATGC
GGGACAAGGGCGAAGACCATGTGAGTGAGACGCGCACAAGCGTTATTTGC
TTGGTGCGTTTGTTCTGTAGCAACTCATTCGGCACGCGCATGGCATGTGT
GCGATTTCTCTTTTGGGGAGATGGTTTTTATTTTTTGTTGTTGTTTTGGT
CGTGAAACAGTATGCTTGCGACGCGAAGATTGAGAGTCCTCATCTTGTCC
GTTCATCTTGTAACGCACCGCCAACCCGGTACAATATATGGTAATTCCCC
GTGTGTTTTTGTTCTCTAAACTTCCCCCCAGCCCTCCCAGCCCCGCACTT
GCTCCTGGAGGTTGTTGTTGCGGTAGAGCTGTAGCCACTTGAGCTCTCAG
ACCATTTTTTTCCCCTGCGTTTGTAACACAACAAATTCACCTTCCACAGT
TTAACAGGCTGGAACAGAATTGTCACACTTGTTTTCCCTCTGCGCCCAGC
CGTCGTAAGTCTTTTTACTACCCTTCTACAACTGTAGGTGGGTATCCTCT
GGCACCAAGCTTGCTGGTGTTCCTCTCCAAACTGTCCACCCCCCGAGCCA
TCCTAACGCTACCCCTTGGCCTCAATGCCGACAGGTGGGTGCGGTGGCCC
TGTCCAAGTTAGTCTCCGCTGCCGGTCCGTCCCTGGCGGCCGTCCCAAGT
CTCCCCACGCACCTCCTGCAGCGGTACCTGGGCCTCTCTTCGCAGCTCCA
GAGCCATCGGTTGCTCCGGCACAGGCCGGTAGCAGAAGGCAGAGGGCCGC
CACCGGGGCCGGCGGCACCTACGGCGCAGCCGTTGCCCTCCGAGCGCCTC
GCGGTATCTGGCCGCGGCGCCGGCAGCGCTATGTTTCCGTGGCAAGCAGC
AGGCGATGACCGTCCTCTTAGCCTGGAGCAACAGCGCCGTTCAGCGGAGG
CGGGCGGCGGGGGGAAAGCCGCTGACGCGGCGGCGGCGGCAGCCCGGCCC
CCTCCGTTGCATGCCGGCAGCCTGAGGCTGTTCTTGGGGAGTATCTGTCG
GATGCTGGGGGAGGCCCCGAGGGCGGGGGCGGTACTTGAGCAGCAGCGCG
GGGGGGGGTCCAGTACGGGCTCGACGGTAGAGGTGGAAGAGGTGCTTCAG
GCGCTGGTGGAGGGGGAGTTGCGGTGCCTGGGAAGCGTGCTCGACCGCCG
GCGAGAGCTGGGTGAGGAGAGATGGGGATGGGCGCTAGAGCCGTTCACAT
AGGTTGCGCAAAACACCACACACCCTTCTATCTGGACTGGTTTTGTCAAA
GCACGTTTGCTCCGCGACACGAAGAAGATGGCCCCACCAAGGGACACGTT
TCTGATAAGCCCAAACATAGGTAGGGTGGCGGCTACGGTTTAAGAGAGGG
TCGTGACAACCCAGTATTTCTTTCTTGAATCCGGTTTTCTCTCAAATCGC
ACTGTGACATGTATGTATTTCTCATGGTCGTGACAAGCCAGTTTGACTCT
CTTCAATCGGTACTTTCTCTGAAATAGTGTCTTTGAACCGTAGCCGCCAC
TGTAGGTAGCACAAAGATGCCACACACCCTTATGTACTTCTTTTTTCGTA
ACCCGGTTACTTCACGACGAAAAGTAAGATGCCAAGGGGCACGTTTCTGA
TTTTCGACCCACGACAAGAAAGGGATGCCACAATCAAGTGACACGTTTTC
CCGAAAGCCAACCCCTCGACGAGACGGTTCCAACGCTGCGATTATTCTGT
GCCGTTACTGCCTGTGGTTTTTTGTCTGCAGATTGGTCGATTTCTCAAAA
AATGGACCAGGGGGCGTGGTATCTGGGGTGGCGTCTTCGATGGTGGCGTG
TTTGTTTGCGTGTTTTTGCTGTTCGCTGGGCGCGTCGTTTCCAGGCGTGG
CCCTCGTTGTATTCTGTGGCCTTGTATGCCTCCCGAAGAAGTGCATTTTT
CTTGTCTTGGGGGGAAACGGCCGTTGCACACGCCTCCGCGCCTGTGCAAA
CCCCGGCGAATGTTGCACTCACCAGCGCACGGTGTTCTTGTGCCCCCAGA
ACCTTCAGCACCAACAACACGATTTATTTTCGGTCAACGCAGAGCAATCG
CAGAAAATCGTGAGATGAGGCAATATGACGCCCGTGTGTGTGTCTGCTAC
CCCCCTCCCCCCACCCCCCGCGCGCGCCTTTGGGTACACCCCCCCCCCCC
CCCCGTTTTTCCCCTCCCCGACCAAAGGAGTTGCCACGATCGTGCGGCAG
CGGCTTAAACCCCGCTGGCCGTTGCCAGGTGTCTCTGTTAAGGGCAGGAT
TTTGCGGTGCTTCTGCTGTCTCAAGAGGACCGATGTGTGCCCAACATTCA
CATGACGGAAGTCAAGCAATATTTGCCCGCCTCCCTCAAACGCAAGGATG
ATGGCTGGTGCATCCTTGTTAACGTAGCCTGGGCCGGCGAACATATCGCT
CCGCCGTCCCGACATTGTAGGGATGTGGGGTCAACGGTCTAACGAAGACG
GCATGCGTGTACGTGAATACCCCCCCATTTTTGAGCCACCTTTGGCAAAG
TAGGAAGGAACGATTGGCCATCAGTGATCGGTCCTGTGGGAGCAATGCTC
CGTCCTCTCGAGGACGCGTGGTCAATGGTCTACCTGCCAAGGCATGCAAA
CATAAAGAGTCCCCCCCCCACATGCCATGGTAACATTCGCCGCCGCCCTC
CACCCCCGGTTCCCTGGACAGCCGTCGTCGCGGCTGCCGCCGCCTCCCCC
CACGCCGCGGACGAAGAGAATCGCGCAATGGCAGACGTGGCGAAGGACTC
CCTGTCCAACCTGTCTCTCATCCTCGGCAAGACCGGACCTGCTTTAGATG
CGCCGGGGCTCGTGGCGAAGTTGTGCGGGTTTGGGGAAGGGTCGGCGGCA
AGCGCTGGCGCCTGCGGCGGTGGCGGGGGGAGGGGGGCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8556:32..6223-

>mRNA_Ecto-sp13_S_contig8556.19960.1 ID=mRNA_Ecto-sp13_S_contig8556.19960.1|Name=mRNA_Ecto-sp13_S_contig8556.19960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8556:32..6223- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTGGAGGCGGTGGAGAGGGCGGATATGTTGGCCTCCCCTGTCAT
GGCCCTGGCGCTGGAGGCCCTGGAGAGCCCGGAGGCGTGCGACGATGCCT
GCGAGCTCGTGACGGTTTCGCTGGAGGCTTTTACGGAACCGGAGGCTGCT
GAGGAAATGTTGCCGAGGGTCCTAACCAGGGCGCAGGCCCTGGCCAACGC
TCCGTCGGAGGAAGTCTGCCGCTGCCTAGCGATGGTCTTCGCCTCGGCGG
CCTGCGTGTACCTACCGGGCATCCTCAAGCCTGAGCTGGGCGGGCACTGG
AGCTCCCTTCTGCAGATCATGGTCGGCATGCTGGAGCACCCCTCCCTGGA
GATCGCCAGCCTTGCCCTCGAGTTCTGGGGGATGCTTGGGGAGCTGCTAA
CGGAAACGGCGGCGGGGGGACGGGGCCCGCGCAGCCCCCCCCTGGAGGAG
TCCGTTCGTCACGCCTGCAGGGTTTCTATGCTCCGCGCCCGCTACCCAAT
GGATGACGGCGGCGGATTGGGGGGAATGGACGAGGACTCGAGGGATGAGC
TGGAAGACTTTAGAGATCAGGTGCAGGAGCTCCTGCAGACCCTCATCATG
CCCGCACCCCCGTGGGAGCAGAATCAGCAGCGGTCTTCCTCCAAGGGCGG
CGGGGCTGCTGGGACCCCGTCCCCTCCTAGGCCAGGCTTCCACGCTAGAG
GAAGCGGGGGCGGCGGCATTTCCAGCGGGCGGGGCTGGGAACGGGCGGGG
GGGGCGAACGGTATCGGGGCGGCGATGAGTCCTGACAACGGACCGGGCAT
GTACCCAGGGCGGCGTTCTTCTCCTTCTCTGTCTACGGCGGCGGCGACGG
CTGCGGTCACCCTTGACGGCAGCAGGAGGAGCAACAGCGACGGCGGTGGG
AGTGCAAGCGGTCGTCGCCGCAGCTTGGGGGAGGACGGGGCGGGGATGGA
CATGGTGCTGTCCCCGGTGCAGAGCGGGCTTCTCCAGTGGCTGGAAGGGC
TGGCCGCTTCCAGCACCCGCGAGGCCCTCCAGGAGCAGCAGCAACGGCGA
TACAGCGGCACGTCCAGGAACGGCACCGCCGGCAGTTGCGTGGATGGCAG
CATCAACAGCGGCGGCAGCGGGGGAGCGGACCATGCCGCTACAGCCCAAG
CGGGCGGAAGAGAAGAAGGAGGAGGAGCGTTGTTGGACGGCGCGGCAGGT
GGAGGGGGGCGGGGAGGGAACTGGTCGGGAGTCGAGGTTGCGCTCCGCAT
GCTCAGCGCCGTGACGAAGGCGATAAACCTACGCGACTTCTGCTCCCCGT
CCCCCTCCTCCGCTGCGCCGGCCCTGTTGAGAGGAGCGGGCACGAACAGT
GATGCCGCAACCACAGCCGCCGCCGCCGCCGCCGCCGCCACCGCCACCGC
CACCGCCGCTGCGTCCCGGGGATACGTCCCCGCGGACAGCGGCGCGGTCG
GTGATGGTGGTCGAGGAACGGGAGCCACGGAGGCGCTCGTGGATATGCTG
CCGTCGCTGCCGCCGGGCCGGAGGGAGTTGCAAAGATCCGCGGCGGTTTT
GGTCGGGGGGCTGGCGGCGTGGCTGGCGAGGAGGCCGAGGAGCCTGGAGC
CGGCGCTGCAGTCGGTGCTCGGGGTGCTGGGGCTGGAGGAGGAAAGGGGG
GGGCAGGCGTTCATGCGGGACAAGGGCGAAGACCATGTGGGTGCGGTGGC
CCTGTCCAAGTTAGTCTCCGCTGCCGGTCCGTCCCTGGCGGCCGTCCCAA
GTCTCCCCACGCACCTCCTGCAGCGGTACCTGGGCCTCTCTTCGCAGCTC
CAGAGCCATCGGTTGCTCCGGCACAGGCCGGTAGCAGAAGGCAGAGGGCC
GCCACCGGGGCCGGCGGCACCTACGGCGCAGCCGTTGCCCTCCGAGCGCC
TCGCGGTATCTGGCCGCGGCGCCGGCAGCGCTATGTTTCCGTGGCAAGCA
GCAGGCGATGACCGTCCTCTTAGCCTGGAGCAACAGCGCCGTTCAGCGGA
GGCGGGCGGCGGGGGGAAAGCCGCTGACGCGGCGGCGGCGGCAGCCCGGC
CCCCTCCGTTGCATGCCGGCAGCCTGAGGCTGTTCTTGGGGAGTATCTGT
CGGATGCTGGGGGAGGCCCCGAGGGCGGGGGCGGTACTTGAGCAGCAGCG
CGGGGGGGGGTCCAGTACGGGCTCGACGGTAGAGGTGGAAGAGGTGCTTC
AGGCGCTGGTGGAGGGGGAGTTGCGGTGCCTGGGAAGCGTGCTCGACCGC
CGGCGAGAGCTGGCCGTCGTCGCGGCTGCCGCCGCCTCCCCCCACGCCGC
GGACGAAGAGAATCGCGCAATGGCAGACGTGGCGAAGGACTCCCTGTCCA
ACCTGTCTCTCATCCTCGGCAAGACCGGACCTGCTTTAGATGCGCCGGGG
CTCGTGGCGAAGTTGTGCGGGTTTGGGGAAGGGTCGGCGGCAAGCGCTGG
CGCCTGCGGCGGTGGCGGGGGGAGGGGGGCGGGG
back to top