prot_Ecto-sp13_S_contig8556.19960.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig8556.19960.1
Unique Name	prot_Ecto-sp13_S_contig8556.19960.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	828

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 1078 bits (2789), Expect = 0.000e+0
Identity = 664/759 (87.48%), Postives = 668/759 (88.01%), Query Frame = 0

Query:    1 MQLEAVERADMLASPVMALALEALESPEACDDACELVTVSXXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACVYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYPMDDGGGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKGXXAAGTPSPPRPGFHARGSGGGGISSGRGWERAGGANGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTLDGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLLQWLEGLAASSTREALQEQQQRRYSGTSRNGTAGSCVDGSINSGGSGXXDXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLRGAGXXXXXXXXXXXXXXXXXXXXXXXASRGYVPADSGAVGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEERGGQAFMRDKGEDHV-GAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSSQLQSHRLLRHRPVAEGRGPPPGPAAPTAQPLPSERLAVSG----RGAGSAMFPWQAAGDDRPLSLEQQXXXXXXXXXXXXXXXXXXXXXXXPLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSSTGSTVEVEEVLQALVEGELRCLGSVLDRRREL 754
            MQLEAVERADMLASPVMALALEALESPEACDDACELVT+ XXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAAC YLPGILKPELGGHWSSLLQIMVGML HPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVR AC+VSMLRARYP DD GGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKG  AAGTPSPPRPGFH RGSGGGGI SGRGWERAGG NGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVT DGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLL+WLEGLAASSTREALQE                             XX XXXXXXXXXXXXXXXXXXXXXXXXXXRGG+WSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALL GAG                       A RGYVPA SG VGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEE GGQAFMRDKGEDHV GAVALSKLVSAAGPSLAAV SLPTHLLQRY GLSSQLQSHRLLR RPVAEGRGPPPGPAAP AQPLPSERLA SG    RG GSA FPWQAAG DRPLSLEQQ     XXXXXXXXXXXXXXXXXX LHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGS TGSTVEVEEVLQALVEGELR LGSVLDRRREL
Sbjct:  240 MQLEAVERADMLASPVMALALEALESPEACDDACELVTIXXXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLNHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRRACKVSMLRARYPSDDCGGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKGGGAAGTPSPPRPGFHVRGSGGGGIFSGRGWERAGGVNGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTPDGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLLEWLEGLAASSTREALQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGDWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLGGAGTSGDPATTAAAAA----------AFRGYVPAGSGVVGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVVGAVALSKLVSAAGPSLAAVRSLPTHLLQRYHGLSSQLQSHRLLRPRPVAEGRGPPPGPAAPAAQPLPSERLAASGPAACRGTGSASFPWQAAGGDRPLSLEQQRRSAEXXXXXXXXXXXXXXXXXXXLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSGTGSTVEVEEVLQALVEGELRYLGSVLDRRREL 988

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BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 1002 bits (2591), Expect = 0.000e+0
Identity = 625/758 (82.45%), Postives = 637/758 (84.04%), Query Frame = 0

Query:    1 MQLEAVERADMLASPVMALALEALESPEACDDACELVTVSXXXXXXXXXXXEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACVYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYPMDDGGGLGGMDEDSRDELEDFRDQVQELLQTLIMPAPPWEQNQQRSSSKGXXAAGTPSPPRPGFHARGSGGGGISSGRGWERAGGANGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTLDGSRRSNSDGGGSASGRRRSLGEDGAGMDMVLSPVQSGLLQWLEGLAASSTREALQEQQQRRYSGTSRNGTAGSCVDGSINSGGSGXXDXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLRGAGXXXXXXXXXXXXXXXXXXXXXXXASRGYVPADSGAVGDGGRGTGATEALVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEERGGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSSQLQSHRLLRHRPVAEGRGPPPGPAAPTAQPLPSERLAVSG----RGAGSAMFPWQAAGDDRPLSLEQQXXXXXXXXXXXXXXXXXXXXXXXPLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSSTGSTVEVEEVLQALVEGELRCLGSVLDRRREL 754
            MQLEAVERADMLASPVM LA+EALESPEACDDACELV   XXXXXXXXXXX MLPRVLTRAQALANAPSEEVCRCLAMVFASAAC YLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYP D+ GGLGGMDEDSRDELEDFRDQVQ+LLQTLIMPAPPWEQNQQRSSSKG  AAGTPSPPRPGFHARGSG GGISSGRGWERAGG NGIG AMSPDNG GMYPGRRSSPSLSTAAA                        RSLGEDGAGM+MVLSPVQSGLL+WLEGLAASSTREALQ                              XX XXXXXXXXXXXXXXXXXXXXXXXXXX   +WSGVEVALRMLSAVTKAINLRDFCSPSPSS APALL GAG                       A R YVPAD G VGDGGRGTGATEALV+MLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEE GGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLS+QLQSHRLLR RPVAEGR PPPGP AP AQPLPSE+L V+G    RG GSA FPWQAAGDDRPLSLEQQ      XXXXXXXXXXXXXXXX PLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGS TGST+EVEEVL+ALVEGELRCLGSVLDRRREL
Sbjct:  246 MQLEAVERADMLASPVMTLAVEALESPEACDDACELVXXXXXXXXXXXXXXXMLPRVLTRAQALANAPSEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEESVRHACRVSMLRARYPSDESGGLGGMDEDSRDELEDFRDQVQDLLQTLIMPAPPWEQNQQRSSSKGGGAAGTPSPPRPGFHARGSGVGGISSGRGWERAGGVNGIGGAMSPDNGAGMYPGRRSSPSLSTAAAXXXXXXXXXXXXXXXXXXXXXXXXRSLGEDGAGMEMVLSPVQSGLLEWLEGLAASSTREALQXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWSGVEVALRMLSAVTKAINLRDFCSPSPSSPAPALLGGAGTNGDAATAAAA------------AFRVYVPADGGVVGDGGRGTGATEALVEMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSAQLQSHRLLRPRPVAEGRRPPPGPPAPAAQPLPSEQLTVAGPAACRGTGSASFPWQAAGDDRPLSLEQQRGSAEAXXXXXXXXXXXXXXXX-PLHAGSLRLFLGSICRMLGEAPRAGAVLEQQRGGGSGTGSTLEVEEVLRALVEGELRCLGSVLDRRREL 989

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8556.19960.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L1R2_9PHAE	0.000e+0	87.48	Xpo1 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FSA2_ECTSI	0.000e+0	82.45	Xpo1 domain-containing protein n=1 Tax=Ectocarpus ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	PANTHER	PTHR12363	TRANSPORTIN 3 AND IMPORTIN 13	coord: 8..196
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..202 e-value: 7.1E-22 score: 79.3
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 23..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8556	contig	Ecto-sp13_S_contig8556:32..6205 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8556.19960.1	mRNA_Ecto-sp13_S_contig8556.19960.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig8556 32..6223 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig8556.19960.1 ID=prot_Ecto-sp13_S_contig8556.19960.1|Name=mRNA_Ecto-sp13_S_contig8556.19960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=828bp
MQLEAVERADMLASPVMALALEALESPEACDDACELVTVSLEAFTEPEAA
EEMLPRVLTRAQALANAPSEEVCRCLAMVFASAACVYLPGILKPELGGHW
SSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTETAAGGRGPRSPPLEE
SVRHACRVSMLRARYPMDDGGGLGGMDEDSRDELEDFRDQVQELLQTLIM
PAPPWEQNQQRSSSKGGGAAGTPSPPRPGFHARGSGGGGISSGRGWERAG
GANGIGAAMSPDNGPGMYPGRRSSPSLSTAAATAAVTLDGSRRSNSDGGG
SASGRRRSLGEDGAGMDMVLSPVQSGLLQWLEGLAASSTREALQEQQQRR
YSGTSRNGTAGSCVDGSINSGGSGGADHAATAQAGGREEGGGALLDGAAG
GGGRGGNWSGVEVALRMLSAVTKAINLRDFCSPSPSSAAPALLRGAGTNS
DAATTAAAAAAAATATATAAASRGYVPADSGAVGDGGRGTGATEALVDML
PSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEERG
GQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSSQL
QSHRLLRHRPVAEGRGPPPGPAAPTAQPLPSERLAVSGRGAGSAMFPWQA
AGDDRPLSLEQQRRSAEAGGGGKAADAAAAAARPPPLHAGSLRLFLGSIC
RMLGEAPRAGAVLEQQRGGGSSTGSTVEVEEVLQALVEGELRCLGSVLDR
RRELAVVAAAAASPHAADEENRAMADVAKDSLSNLSLILGKTGPALDAPG
LVAKLCGFGEGSAASAGACGGGGGRGAG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold