mRNA_Ecto-sp13_S_contig85306.19933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85306.19933.1
Unique NamemRNA_Ecto-sp13_S_contig85306.19933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: D7G0K6_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.070e-24
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RTQAQA SILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ
Sbjct:   46 RTQAQAASILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 96
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.880e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RTQ QATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ
Sbjct:  424 RTQGQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 474
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A9V341_MONBE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V341_MONBE)

HSP 1 Score: 59.7 bits (143), Expect = 1.580e-9
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RT+A+A  I++  R  I    DF+K+A   SDCSSAKRGGDLG FGRG+MQ
Sbjct:   93 RTKAEAIEIIKRHREAIAQGADFAKIAETESDCSSAKRGGDLGAFGRGQMQ 143
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: D2V3Z5_NAEGR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V3Z5_NAEGR)

HSP 1 Score: 58.2 bits (139), Expect = 4.200e-9
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQED----FSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            R++  AT IL+GLR  I + ED    F ++A+  SDCSSAKRGGDLG FGRG+MQ
Sbjct:   86 RSKKDATEILEGLREDIFNAEDMAEKFQELASVHSDCSSAKRGGDLGFFGRGQMQ 140
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A0A812DEE8_SEPPH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DEE8_SEPPH)

HSP 1 Score: 57.4 bits (137), Expect = 6.600e-9
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKS-QEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RT+ +A +IL G R  IKS + DFS +A+  SDCSSAKRGGDLG FG G+MQ
Sbjct:   71 RTKEEAINILSGYRDQIKSGKADFSDLASKYSDCSSAKRGGDLGIFGHGQMQ 122
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: UPI000B8F862F (putative peptidyl-prolyl cis-trans isomerase dodo n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B8F862F)

HSP 1 Score: 57.4 bits (137), Expect = 7.060e-9
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQE-DFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RT+ +A  IL G R  IKS +  F+++AT  SDCSSAKRGGDLG FGRG MQ
Sbjct:   77 RTKEEALDILAGYRDSIKSGDVSFAELATKYSDCSSAKRGGDLGPFGRGAMQ 128
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A0A6A4VF94_AMPAM (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VF94_AMPAM)

HSP 1 Score: 57.0 bits (136), Expect = 9.290e-9
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQED-FSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RT+ +A  ILQG R  I S ED F  +A+  SDCSSAKRGGDLG FGRG MQ
Sbjct:   75 RTKEEALQILQGYRDRIVSGEDTFENLASQFSDCSSAKRGGDLGPFGRGAMQ 126
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A0A6A6VMC4_9PLEO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6VMC4_9PLEO)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-8
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            R++A+A  I+QG R  I + E+ S +AT  SDCSSA++GGDLG FG G MQ
Sbjct:   96 RSEAEAEEIIQGYRERIDAGENLSDLATTESDCSSARKGGDLGFFGHGDMQ 146
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A0A507EGF7_9FUNG (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EGF7_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 3.240e-8
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKSQE-DFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            RT+ +A  I++G R  I S E D   +A   SDCSSAK GGDLGTFGRGKMQ
Sbjct:   68 RTKEEALQIIEGYRQRITSGETDLPTLARTESDCSSAKAGGDLGTFGRGKMQ 119
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BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Match: A0A4C1VW40_EUMVA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1VW40_EUMVA)

HSP 1 Score: 55.5 bits (132), Expect = 3.640e-8
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RTQAQATSILQGLRSGIKS-QEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 153
            R++ +A  IL+G R  I + Q DF+++A+  SDCSSAKRGGDLG FGRG+MQ
Sbjct:   75 RSKDEALEILKGYRKQIVAKQADFAEIASKYSDCSSAKRGGDLGMFGRGQMQ 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85306.19933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K6_ECTSI2.070e-2498.04Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5K9M4_9PHAE4.880e-2298.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A9V341_MONBE1.580e-958.82Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosi... [more]
D2V3Z5_NAEGR4.200e-958.18Peptidyl-prolyl cis-trans isomerase n=1 Tax=Naegle... [more]
A0A812DEE8_SEPPH6.600e-961.54Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sepia ... [more]
UPI000B8F862F7.060e-961.54putative peptidyl-prolyl cis-trans isomerase dodo ... [more]
A0A6A4VF94_AMPAM9.290e-963.46Peptidyl-prolyl cis-trans isomerase n=4 Tax=Amphib... [more]
A0A6A6VMC4_9PLEO2.500e-854.90Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sporor... [more]
A0A507EGF7_9FUNG3.240e-859.62Peptidyl-prolyl cis-trans isomerase n=1 Tax=Powell... [more]
A0A4C1VW40_EUMVA3.640e-857.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Eumeta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85306contigEcto-sp13_S_contig85306:369..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7G0K6
Preferred nameESS1
Model size153
KEGG koko:K02887,ko:K09578
KEGG Pathwayko03010,ko04622,map03010,map04622
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000413,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009909,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016571,GO:0016853,GO:0016859,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0030054,GO:0030162,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031334,GO:0031399,GO:0031400,GO:0031401,GO:0031935,GO:0031937,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032879,GO:0032880,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0042176,GO:0042177,GO:0042325,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043412,GO:0043414,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045861,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051726,GO:0055044,GO:0060255,GO:0060260,GO:0060261,GO:0060968,GO:0061187,GO:0065007,GO:0070063,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0090311,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901407,GO:1901564,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000749,GO:2001141,GO:2001251,GO:2001252
Exons1
EggNOG free text desc.positive regulation of chromatin silencing at rDNA
EggNOG OGsCOG0760@1,KOG3259@2759
EC5.2.1.8
Cds size153
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.5747561-CDS-Ecto-sp13_S_contig85306:368..5211681464123.5747561-CDS-Ecto-sp13_S_contig85306:368..521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85306 369..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85306.19933.1prot_Ecto-sp13_S_contig85306.19933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85306 369..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85306.19933.1

>prot_Ecto-sp13_S_contig85306.19933.1 ID=prot_Ecto-sp13_S_contig85306.19933.1|Name=mRNA_Ecto-sp13_S_contig85306.19933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
RTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKM
Q
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mRNA from alignment at Ecto-sp13_S_contig85306:369..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85306.19933.1 ID=mRNA_Ecto-sp13_S_contig85306.19933.1|Name=mRNA_Ecto-sp13_S_contig85306.19933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85306:369..521- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACCCAGGCGCAGGCGACATCCATTCTGCAGGGCCTCCGTTCCGGCAT
CAAGAGCCAGGAAGACTTCTCTAAGGTTGCTACGGCCAGGTCTGACTGCT
CCAGCGCCAAGCGCGGTGGCGACCTTGGCACGTTCGGCCGTGGCAAGATG
CAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85306:369..521-

>mRNA_Ecto-sp13_S_contig85306.19933.1 ID=mRNA_Ecto-sp13_S_contig85306.19933.1|Name=mRNA_Ecto-sp13_S_contig85306.19933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85306:369..521- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACCCAGGCGCAGGCGACATCCATTCTGCAGGGCCTCCGTTCCGGCAT
CAAGAGCCAGGAAGACTTCTCTAAGGTTGCTACGGCCAGGTCTGACTGCT
CCAGCGCCAAGCGCGGTGGCGACCTTGGCACGTTCGGCCGTGGCAAGATG
CAG
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