mRNA_Ecto-sp13_S_contig1240.1993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1240.1993.1
Unique NamemRNA_Ecto-sp13_S_contig1240.1993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: D7FGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU4_ECTSI)

HSP 1 Score: 547 bits (1410), Expect = 1.170e-194
Identity = 296/325 (91.08%), Postives = 306/325 (94.15%), Query Frame = 1 
Query:   46 MIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQAEHLGFVWGAFDQFICRYKATSDSDALLPRSPPPGHAGRSXXXXXXXXXXXXXXXXXXNISYGDSSSKPPGTPRGAGSSAASKPGTAAMKLAAHEIVLSATPTALSWAVVALLADGGGRVSGGDFVGGVGGTKGRGQGHLLPRSRDKYPTPGTPGVDSRQVSRRLTER 1020
            MIPWRDWDEWYRVKALLFSP+PYLR+QGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAA GGGL FHGG+RSEEELRLIYSAVVVRAVNGLTGHEQKAA+A PVSSLAREIGLPTWIVDIRHEAAHKQLPGIV+LRLAADFL+DYLWRRHWSPQAEHLGFVWGAFDQ I RYKATSDS+AL+PRS  PGHAGRS XXXXXXXXXXXXXXXXX    GDSSSKPPGTPRG GSSAASKPG AAM++AAHEI LSATPTALSWAVVALLADGGGRV GGD VGGV GTKGRGQGHLLPRSRDKYPTPGTPGVDSRQVSRRLT R
Sbjct:    1 MIPWRDWDEWYRVKALLFSPDPYLRTQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAKGGGLAFHGGQRSEEELRLIYSAVVVRAVNGLTGHEQKAAHAAPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVSLRLAADFLVDYLWRRHWSPQAEHLGFVWGAFDQLIGRYKATSDSEALMPRSSSPGHAGRSSXXXXXXXXXXXXXXXXXXXXDGDSSSKPPGTPRGTGSSAASKPGAAAMEVAAHEIALSATPTALSWAVVALLADGGGRVGGGDCVGGVSGTKGRGQGHLLPRSRDKYPTPGTPGVDSRQVSRRLTAR 325
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: A0A6H5JW11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW11_9PHAE)

HSP 1 Score: 541 bits (1394), Expect = 2.880e-186
Identity = 287/323 (88.85%), Postives = 294/323 (91.02%), Query Frame = 1 
Query:    1 MSRPINADAGLCIPRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQAEHLGFVWGAFDQFICRYKATSDSDALLPRSPPPGHAGRSXXXXXXXXXXXXXXXXXXNISYGDSSSKPPGTPRGAGSSAASKPGTAAMKLAAHEIVLSATPTALSWAVVALLADGGGRVSGGDFVGGVGGTKGRGQGHLLPRSRDKYPTP 969
            MSRPINADAG  IPRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLND GAAG GGLTFHGG+RSEEELRLIYSAVVVRAVNGLTGHEQKAA+A PVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFL+DYLWRRHWSPQAEHLGFVWGAFDQ ICRYKATSDSDAL+PRS  PGHAGR        XXXXXXXXXXX     D  SKPPGTPRG GSSAASK G AAM++AAHEIVLSATPTALSWAVV+LLADGGGRV G  FVGGVGGTKGRGQGHLLPRSRDKYPTP
Sbjct:    1 MSRPINADAGQYIPRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDAGAAGRGGLTFHGGQRSEEELRLIYSAVVVRAVNGLTGHEQKAAHAAPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLVDYLWRRHWSPQAEHLGFVWGAFDQLICRYKATSDSDALMPRSSSPGHAGRPSSKKPRTXXXXXXXXXXXXXXXXDXXSKPPGTPRGTGSSAASKFGAAAMEVAAHEIVLSATPTALSWAVVSLLADGGGRVRGEYFVGGVGGTKGRGQGHLLPRSRDKYPTP 323
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: D8LD46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD46_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.940e-53
Identity = 120/150 (80.00%), Postives = 126/150 (84.00%), Query Frame = 1 
Query:  571 KATSDSDALLPRSPPPGHAGRSXXXXXXXXXXXXXXXXXXNISYGDSSSKPPGTPRGAGSSAASKPGTAAMKLAAHEIVLSATPTALSWAVVALLADGGGRVSGGDFVGGVGGTKGRGQGHLLPRSRDKYPTPGTPGVDSRQVSRRLTER 1020
            +AT DSDALLPRS  PGHAGRS      XXXXXXXXXXXX I+ G+  SKPP  PRG GSSAAS PGTAAM++AAHEI LSATPTALSWAVVALLADGGGRV GGDFVGGVGG   R QGHLLPRSRDKYPTPGTPGVDSRQVSRRL+ R
Sbjct:    6 EATRDSDALLPRSLSPGHAGRSSNKKTRXXXXXXXXXXXXKINDGNXXSKPPCAPRGRGSSAASNPGTAAMEVAAHEIALSATPTALSWAVVALLADGGGRVRGGDFVGGVGG---REQGHLLPRSRDKYPTPGTPGVDSRQVSRRLSAR 152
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: A0A835YSI0_9STRA (Las1-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI0_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.350e-52
Identity = 83/165 (50.30%), Postives = 121/165 (73.33%), Query Frame = 1 
Query:   40 PRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHG--GRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQAEHL 528
            PR++PW++WDEW  V+ LL+SP+P  R++GV  VA W+ RER+PHAVE T+QLVEV L++   +     T+ G  GR S + LRL+YS+V+VR VNGL    QK A+A  +  +AR+IG+P+W+VD+RH+AAHK +P + + RLA+ FL+DYL +R+W  Q ++L
Sbjct:    8 PRLLPWQNWDEWVHVRGLLWSPDPVDRNEGVLRVAAWRCRERVPHAVECTAQLVEVALHEWRCS-----TYPGQYGRNSLQ-LRLMYSSVIVRTVNGLVEAHQKCAHAISIQQIARQIGIPSWLVDLRHDAAHKDMPSLASFRLASAFLLDYLSQRYWDVQQQNL 166
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: A0A7S2RN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RN98_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.660e-42
Identity = 78/185 (42.16%), Postives = 111/185 (60.00%), Query Frame = 1 
Query:   40 PRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQAEHLGFVWGAFDQFICRYKATSDSDA 594
            PR++PW+ WDEW+ V+  LFS +P L+   V  VA W+ R R+PHAVE+T+QLVEV L+D G  G           SE  L+  YS  VVRAVNG+   EQ+ A A+ VS +A  +GLPTW+VD+RH+A H  +P + TLR+AA  L+ + +  +W+ Q   L  +       + RY +  +  A
Sbjct:   19 PRVLPWQHWDEWFEVRDSLFSGDPLLQRAAVARVAAWRVRGRVPHAVESTAQLVEVMLDDQGRDG----------LSELVLQSCYSLSVVRAVNGVADAEQRGATASSVSLMASRVGLPTWLVDLRHDATHNAMPPLQTLRVAAQTLVHWFFEGYWTSQTRQLESLESLCVSVVQRYHSCQNRRA 193
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: A0A7S3GZ26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZ26_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.490e-38
Identity = 74/160 (46.25%), Postives = 107/160 (66.88%), Query Frame = 1 
Query:   37 IPRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQ 516
            IPR +P+ DWDEW  VK+ LFS EP   S  ++ V++W+ R R+P +V++T+QLVE+RL D  +     + +H    SE EL+L+YSA VVR+VNGL    Q+  YAT V +LA  +GLP WIV++RH+A H Q+P +  LR AA  L+++ +  +W PQ
Sbjct:   12 IPRFLPFADWDEWITVKSGLFSTEPRQISVALEMVSLWRVRGRLPLSVDSTAQLVELRLRDSPSENRAHV-YH----SENELKLLYSAAVVRSVNGLVDPSQQGVYATSVLTLAERMGLPGWIVELRHDATHNQMPSLSVLRTAASTLINWYFDFYWQPQ 166
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: A0A7S0GXZ1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GXZ1_MICPS)

HSP 1 Score: 141 bits (355), Expect = 3.090e-37
Identity = 69/163 (42.33%), Postives = 97/163 (59.51%), Query Frame = 1 
Query:   43 RMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGRR-SEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQAEHL 528
            R +PWRDW EW RV+  L   +P  R   +  VA W+ R R+PHAV+ T+ L+E R  D G  G  G    GG   SE  LRL Y+A +VR VNG     QK  YA PV +LA+ +G+P  +VD+R  A+H+++P +  LR A++  + +L+ R+W  QA  L
Sbjct:    5 RRVPWRDWAEWDRVRVGLCGDDPQARDASIARVADWRRRGRVPHAVDCTASLLETRSLDAGVPGNVGNVGSGGAPLSENMLRLAYAAALVRMVNGAVDPSQKGKYAAPVMTLAKRMGIPAVLVDVRMAASHQEMPALALLRHASERALQWLFERYWHAQANQL 167
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: T0R2P0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R2P0_SAPDV)

HSP 1 Score: 145 bits (366), Expect = 5.370e-36
Identity = 74/162 (45.68%), Postives = 102/162 (62.96%), Query Frame = 1 
Query:   55 WRDWDEWYRVKALLFSPEPYL------RSQGVQHVAVWQSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGR--RSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQ 516
            W DW EW +V   LF+ E +L      + +G+  +A W++R  +P A+E T+QL E+  +D    G  GL   G    RS EELRL+Y+A ++R VNGL    QK AYA PVS+LA  IG+P W+VDIRHE+AH +LP + TL+LAA  L  +L+  +W PQ
Sbjct:   34 WMDWHEWQQVYRALFAVELHLDASNGDKLRGLARIAAWRARSDVPIAIEVTAQLAEISCHD----GAYGLATPGRSMYRSYEELRLLYAATILRCVNGLVDASQKGAYAMPVSTLAMRIGIPLWVVDIRHESAHTKLPALPTLQLAAQTLWKWLFEHYWQPQ 191
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: A0A6A3SSJ5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SSJ5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.570e-35
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = 1 
Query:   46 MIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLND---------VGAAGGGGLTFHGGRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQ 516
            ++PW DW EW  V+A LFS +PY + + V  VA W+SR ++P A+  T+QLVE++L++         VG +           RS  EL L+Y++ +VR VNGL    QK AYAT VS+LA+ IG+P W+VD+RHE+ H QLP +  LR AA  L+ +L   +W  Q
Sbjct:    7 VVPWLDWAEWQEVRAGLFSCDPYAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSS----------RSHIELSLLYASTIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWVVDLRHESTHNQLPSLPVLRFAAKHLLAWLRANYWEAQ 162
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BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Match: W2QXV9_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2QXV9_PHYPN)

HSP 1 Score: 144 bits (363), Expect = 2.790e-35
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:   49 IPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVWQSRERIPHAVETTSQLVEVRLND---------VGAAGGGGLTFHGGRRSEEELRLIYSAVVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGIVTLRLAADFLMDYLWRRHWSPQAE 522
            +PW DW EW  V   LFS +P+ + + V  VA W+SR ++P A+  T+QLVE++L++         VG +           RS  EL L+Y++V+VR VNGL    QK AYAT VS+LA+ IG+P WIVD+RHE++H QLP +  LR AA  L+ +L   +W  Q +
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSS----------RSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQED 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1240.1993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGU4_ECTSI1.170e-19491.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW11_9PHAE2.880e-18688.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD46_ECTSI3.940e-5380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSI0_9STRA8.350e-5250.30Las1-like protein (Fragment) n=1 Tax=Tribonema min... [more]
A0A7S2RN98_9STRA4.660e-4242.16Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3GZ26_9STRA2.490e-3846.25Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0GXZ1_MICPS3.090e-3742.33Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
T0R2P0_SAPDV5.370e-3645.68Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6A3SSJ5_9STRA1.570e-3543.37Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2QXV9_PHYPN2.790e-3543.11Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1240contigEcto-sp13_S_contig1240:7816..14904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score552.0
Seed ortholog evalue2e-154
Seed eggNOG ortholog2880.D7FGU4
Preferred nameLAS1L
Model size1022
KEGG koko:K05956,ko:K16912
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000469,GO:0000470,GO:0000478,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0035097,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0046483,GO:0051276,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1902494,GO:1990234,GO:1990904
Exons7
EggNOG free text desc.endonucleolytic cleavage involved in rRNA processing
EggNOG OGsKOG2425@1,KOG2425@2759
EC2.5.1.60
Cds size1020
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko03009,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1240.1993.1prot_Ecto-sp13_S_contig1240.1993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1240 7816..14904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.0924127-CDS-Ecto-sp13_S_contig1240:7815..78661681462660.0924127-CDS-Ecto-sp13_S_contig1240:7815..7866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 7816..7866 -
1681462660.1044264-CDS-Ecto-sp13_S_contig1240:8337..87401681462660.1044264-CDS-Ecto-sp13_S_contig1240:8337..8740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 8338..8740 -
1681462660.115239-CDS-Ecto-sp13_S_contig1240:9602..97301681462660.115239-CDS-Ecto-sp13_S_contig1240:9602..9730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 9603..9730 -
1681462660.127728-CDS-Ecto-sp13_S_contig1240:10431..105241681462660.127728-CDS-Ecto-sp13_S_contig1240:10431..10524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 10432..10524 -
1681462660.137386-CDS-Ecto-sp13_S_contig1240:11132..112821681462660.137386-CDS-Ecto-sp13_S_contig1240:11132..11282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 11133..11282 -
1681462660.146405-CDS-Ecto-sp13_S_contig1240:12575..126831681462660.146405-CDS-Ecto-sp13_S_contig1240:12575..12683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 12576..12683 -
1681462660.1588385-CDS-Ecto-sp13_S_contig1240:14817..149041681462660.1588385-CDS-Ecto-sp13_S_contig1240:14817..14904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1240 14818..14904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1240.1993.1

>prot_Ecto-sp13_S_contig1240.1993.1 ID=prot_Ecto-sp13_S_contig1240.1993.1|Name=mRNA_Ecto-sp13_S_contig1240.1993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MSRPINADAGLCIPRMIPWRDWDEWYRVKALLFSPEPYLRSQGVQHVAVW
QSRERIPHAVETTSQLVEVRLNDVGAAGGGGLTFHGGRRSEEELRLIYSA
VVVRAVNGLTGHEQKAAYATPVSSLAREIGLPTWIVDIRHEAAHKQLPGI
VTLRLAADFLMDYLWRRHWSPQAEHLGFVWGAFDQFICRYKATSDSDALL
PRSPPPGHAGRSSNKKTRTSSAAFGGGSSSNISYGDSSSKPPGTPRGAGS
SAASKPGTAAMKLAAHEIVLSATPTALSWAVVALLADGGGRVSGGDFVGG
VGGTKGRGQGHLLPRSRDKYPTPGTPGVDSRQVSRRLTER
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mRNA from alignment at Ecto-sp13_S_contig1240:7816..14904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1240.1993.1 ID=mRNA_Ecto-sp13_S_contig1240.1993.1|Name=mRNA_Ecto-sp13_S_contig1240.1993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1240:7816..14904- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGACCTATCAACGCCGATGCCGGCCTATGTATCCCTCGGATGAT
CCCCTGGCGAGACTGGGATGAGTGGTACAGGGTCAAGGTGAGCTCCTCTG
ATCAACCTGGGTTGGCGCACTTAACGCAGTACGTTTGTGCCTCTAAAACC
CAAGTGCCGCTGTAATTACGTAATTCCATGTAGGCTACAGATAGCATACC
CACCCTGACAGCGTTAGCGGATGAGTTTGCGGGCAGATACTGCCAAGAAT
TGGCGTAGGTTCTACATTGAATCGGGTAAAACACCACTCCGACCTGGAAA
CAAAGCCAGTTGCTGTATTGTCAGCATGTCTACCTGTGTCTCCGTGCTGC
ATCCTAAGCTTCATATTGCAGTGGACTGCCCCCACCTGTGCCTGATTGAC
CGTGACGGTTTCGTAGCCGCAAGAGTGGGCAACGCTTGTAAATAACACCT
TATTTTCTCTTGTGGGGCAGATACTGTAGGTCAACACTCATGCATACAGA
AGCACTGAGACGAAACAACGGCAACAACGAGTTAGGGAAGACCCTGCAGC
GTTTTGAAGTATACATACAGAACGGCCCGCAATGAAGATAAATCTGTCAA
GAGAAGAGGCTCAAATGTTCGCGAAAAATAAGAAAAAAGGAAACACAGCT
CAATCTCGACCACAACATAAGAAACGTCCCAATAAGAAACATGACCGTGC
GATACCCCCAACACATTAGAAGCAAGGGGTAGCTGGGAAGCGTGTCCAAT
ACTTCCCACTGCTGCTGCTGCGCTGCTGCCATGCTCCAACCCCCTGCCTA
GCCTAGCATGTATTTTTTTTTGGGGGGGGAGAGTAGTTGTTTTCGCGGCG
CCCCTCGCGCCCCCGCGCCGCCGCGGGCTGCGCTACCCACAGCAGCTGTA
CTGCTTTACCGCCACACATCGCGGAGAAATATGAAAATATGAAAATAAAA
TAAATAAGCAGGCTGCGACAGCCCAAAGGAATAAGAAATTCGTTTAAAGA
AAATGGACAACTTCGGCTGGTCCTTCGACCCAGAATAAGGGATTGAGGCT
TGACCCGATTTTGACGTTTCTTATCTCCGAGCCCGTTCTGTACTGTAGCT
GCGGCACAGAGGTGCTGACGGGGTGGTCTCTTATACATCTCACATCCCAC
GGTTTAAGTTAGGCGTATTGCATACTTATTGTAAGCACGCAGAAGGCCCG
CGGCATCACATTTTTCGCCCGCTCCACAGACACTCGCAGACATTCAATAT
TGTTGGTGTACCGCAATACAACAATTGTCAGCCCGGCATCTTTGCGCAAG
TCATTCCAGCTCCCAACGCAAGGCAGGTGAGACCCTTCTTAAATAGGCAG
GTGGACCCTTCTTAAATTTCCAGCACAACAGCATAACAGCACCTTTAATC
TGCTGGAATCTGGGCATAGTACAAGAAATCAAGGTATGTTGATACCCCTC
ATGCGGTCCGTTCTCAGGTTTGACCACATGCACGCTCCGCTGACAGCACA
AGTATTGTGCGGACGACCGGAGATGATTTGTGTTTCGTTGTCCTGAATTG
ACGTGCTGACCTCGAGACGACCAATCGCGTGCGGAGTTTGTGGGCAAAAG
GTGTGCGTACGTTCGGGTAGACTGTGGTTTTCAGCAATGCTGACTGCCCG
AGGAATGATGTGCTGGTTGATGGAGCTTGGTGTACACCCATTGGTTGTTG
AACGCTGGCAGGAGCTATGATGTAGTCCAAGGGTACGAAGGTTTCATGTG
CTGGTGTGGCAATAACATCAATACATGATGCGGAACGGAACGAAGGGGAA
GGTTCGGTTGGGATGGAGTGGTTGAATGCGGGAGGCTAGGCGAGGCAGAC
AGGAGCACAATGACCCAGGCAGGCTTGCCGCTATTCCTTCTGTTCCGTTC
CTGTGTCGCGGCGGCCCTTACCGACATTCATCTTTCAATTACAGTCGATG
TGGTGTATTGTCATTTTTCGCCCACGCCCCTCAGCACGCATCCTGTGTAC
AATGTCTGCTGTGTTCCCTTTTCCGCCATCGGACCATTTACACGGTGTCG
CGCCTGCTATTTCGACACCTGAGCCTCTATTGCGCGGATGCTGCAACGAG
AGCGGCTTAAATGTTGCACATTCTGTGCGTGTATCTGTCAAAACGGCGCC
AAACACGTGTGGGCGAACCCGTTCGTTCCTCGCTTATATTGGTCGCACCC
ATGACGTGCTACCATCGGCAGGCCCTGCTGTTTTCTCCCGAGCCCTACCT
GCGGTCCCAAGGTGTGCAACACGTGGCCGTCTGGCAGAGCCGAGAGAGAA
TACCACACGCTGTGGAGACCACGTCCCAGGTACTGTCAGACGTAACGACT
GTGTATGGCATCGCAAAGATATAACGATGGTTGGTGACTGCCACAGTGGC
GATTTTCGTTTGTTGTGGTGCACACTCATGAACCCTTTCCTTGCCGATGT
GACGTCAGCTGCGGTGCGATAGGCGATCATGGTGTCTACCGTATTCGCCA
ACGGCGCGAATGACTAGCATGATTGCAGAAGCCGTAATTGACGTTGTCCA
AGTAGTAGATGAAGGCACCCCTCAGAAGCATGCGCGAGTGGTTTTTTCTC
GAGAAAAACGTGAGCAATGGTAGCTATTGACGGAAGAAATTGCATCGCCC
TTGTTGTAGATGTCTGTCGCCGTTTTTCGTACAAGCTCATGGCCCCACAC
CCAGACTGTGGTGATGTTCCAGACGCAAGCCCTCGTACCAAGAAGAAATG
ACCCAATCCTGCAAGTCTTCCATGGTGCGATAGAAATAGTAGTAGTCGCG
GAGTATTACAGTAGCAGTACCTGTCACACGAGCGGTATCACAGCAATTTG
TTTTGCCACTCTCTTGGCAGCAACGCTCGTTTACCTCATGTTGTGGGCGG
ATGTATTGTCTTGCGCATGGAGGTAGGCAGCGAACAGTCAACATTCCTCT
CTCATCATTTGGCCATCCGAGATCAACCCACCACCAGCCACATGAGTACG
AGAATACACACGCTAACGAGGGCTTCTTTCAACCTCAAAAGTATCCAAGA
ACACAAAACAGGAAGCATACGAACAAGCATCACATGGAGCCGTAAAGACA
AGAAAAGTCCGTGCCCGGACTGGTCCTTATTGCGCAATGAAAAGCGGCTT
GATTTCTCCGCCCGCGCATGTATAGGACTTGCTGCCTGGAAGAGTCTCCC
GATAGTTGCTAGGAGCATGCACTTTTCAGCTCTCAACCCATCTATCCATC
AACCTAGCAGAAACGATAGGGTCGGCTGTGTTCCGTGACCTTCAACCCCA
ACTGTTCAAAAGTTGCTCAAGTTGTTTGCCGTGGGTTGAGCACAGGAATG
GCCACATTATTTTGGGACAACAACTGATGTTCCCCCTCCTGATATACTGT
CATGAGCCTGTTAGTAGGGTTCTTCGCGGCCTGCTCACGGGTTAGGAGTG
GTCTGGTGGCCCTAGTCGTTGTTCTCACCCCCGATAGGAGCATGTATCGG
GACAGAAACAGCAACGGTACCAACAACGACAGCAACAACAACGAAACAAC
CAAGACGATTACCACCACCACCACGTTGCACGACGTGCGCTGCTGTCCGC
TTCTTTGTATCGGCGGCCAAAGCTCGTTGAGGTTCGGCTCAACGACGTAG
GTGCGGCAGGGGGAGGGGGGCTGACCTTTCACGGCGGTCGAAGGAGCGAG
GAGGAGCTGCGGCTCATCTACAGCGCCGTGGTCGTCAGAGCGGTCAACGG
CCTTACCGGGCACGAGCAAAAGGTGTGCGGAGCAGCCGAGACACGGGTGA
ACTGATGCATTTTGGCCTGTAGTGGCAACAGGGGAGGTGCTTTTTCGGGC
TCCTGCGACCTCTGGTGGGAGGCAGTCGCCGATTTTTTTGTTGTGGTAGT
AGCAAGGCTTTGTGACCGGGACCGGTAGTGCCTGGGGGGGAAGAAATCGC
CGACATTGTGTGTCTAGCGGGGTGAAACATTTTTAGGGTCTGGGCGGACC
CCGCCGTATCCGTCGCCAAAAGCTGAAGTTGGGAACACATGTCGTTCGGA
CTTTCAAATTCTCCAATAAACTGGGTTAACGGGGTCCGTCTCCTGCGCAT
TGTCCCCGGACAAATGACTACTTTGTTGGTTGTTTCGCTGGCGGCGTCTC
CTCAGCTGAGGAAATGCTGTTCTCGTCGAGAGGTTTTGAATGCATACTCA
ACCAGAACCTGTGATGCTGTGCGAGGCTTGTCCCCCCACACGTATGCGTG
TGCAAACTTCACTATTTAATCGCCGGCCCCACACCGTCGCGCATTTTCCA
ACGGCACTCTCGATACCGGCCGATCCATTCATTTCGCCAACGAAAACAAA
GTCGCCTGCCGCTCTCCCCCCAACAACCAGGCCGCATACGCCACGCCCGT
GTCTTCCCTGGCGCGAGAGATCGGGCTGCCGACGTGGATAGTTGACATAC
GACACGAAGCTGCCCACAAGCAGGTAGAATGATGGCCGTCCCGTATCCGC
CAGACGTGGCTTTTTTGTAGCGTGCATAATGTTGGTCTCAGGTTGCGGTT
CGATTCAGAGCCGCTGCGTTCTCTTTTTCTAGGACAGATCAACAGTCCTT
TACGGAACCCTGCACAGTCTCGCTGTGTTGTCGCTTACCACATGTGTTAA
CCCTGGACCTTGTCTGAGCGCGAGGCCGAAACATGTTCGCCAAGTTTCGG
CTTGCCAATGCCTGTCATTGGCGTCGCTGGAGCTACAACTTCCGTGAGGC
GCGCCTTCACGCCTTCGGCCCCAGGAGGTACTGTAGCGCTGCACGAAGAG
CACGATTGTGACTCCAGCACATGAGTCACCCCCGTGAACGGCTCTCCAGT
GTCACCTCCCTCATCTCTGATGACGTGCGACACCCCAGTCTTGAGCCTAA
CGAGACGTATTTTGTTGTTGCTGGTAGAACAAGCACACGGGAGCCAAAAG
TAGGTCGAAGCATATTCAACATACTTGCTGACTCGTGGAATCAACACAGC
CACCACCTTCACCTGACCCCTCCCATCTTTGCATTAGTCTCCCCTATAAG
CAAGAAATAAAAGATAAGAATACAAAATATGTTGGACACACACAAGTATA
AGAACACGGAAGAGTGAACCTTTCACGTTCACTTTTGTGTCGCTCCTCAT
CGCGGAATTTCGCGATCCTGCCAGTTGCCCGGCATTGTCACCCTTCGGCT
CGCGGCGGACTTCCTTATGGACTACCTATGGAGGAGGCACTGGAGCCCAC
AGGCTGAGCACCTCGGATTCGTTTGGGGTGCGTTCGACCAGTTCATTTGC
AGGTGTGCAAAATATTGTTTGGTTACTACGCGATGCCGAGTGCATCGGGT
GCAGTTGTGGAGGGGGTGTTGCGCGTGTACGGGGTACGGGTAAATCCGAG
GTACGCACCACCGTCACCTCCTGTGTGAACAGTGTTGCTGCACGCACCTT
CCTGGCACAGCCTTGGCTACTGGGCTTTGGCTTCTGGGCCTTAGCTACTG
GACCTTCATTCTCTGGCCCACCAGTACAACAAGAAAATCCTGTGTGGGCT
TGCTGCTTCGGTACCTGGCTGGTGCGCCAACTTGACACATAAAAACGCAA
AAAATAACGTAAAAAAGAAAAGAGACCCTACCACTGCTGTTGTAGTTTAC
AGTTTCGTTCAGAGGGAGTGTGCTTGGGTTTAGTGCTTCAAGGTTTGCCC
AGGGTGTGGCTGTCCTAGGCAAGGGAGTCGCCTGGTTTGGTCGTTCAAAG
TCGCAAGCTGCATCGTTTCCCCACAGACTGCATATTGTCGAGGCTACCAT
TAGAGGTGGGTGTTTTTCGTTCATGAGCGATGCGTGGTCTTTTAGCCGGG
AGTACGCCATGTATTATTATGTGCTCGTGGTAAGCGTGCCCTGCATTTGC
GGCGTAGAAACGGGTACCCGAACTGATCGTGGATAGCGGCGAATTCAGTC
TCAAGAGGTCGGGATTGACTACGAATTGTGTTGATACATCGCACCCTGTG
CGTCAACAGCTATCTCATCGGCAAGTGGGGCAGCGGAGGTAAACATATCT
ATGGGACCAAAGGCTCTATTCGATTCCAGGCACGAGGTCTGTTATCCACA
GGAAACACCTTCCTGGCTTCCGATCAACCTCGATATCTGGCCGACCTTTT
TCGCCCTACCCCAGATACAAGGCCACCAGCGATAGCGACGCCTTGCTGCC
GCGCAGCCCTCCCCCCGGCCACGCTGGCCGCTCAAGCAACAAAAAAACGC
GGACGTCTTCCGCCGCATTCGGCGGCGGGTCTTCATCGAACATAAGTTAC
GGGGATTCCAGCTCGAAGCCTCCCGGCACCCCGCGCGGAGCGGGCTCATC
AGCGGCATCGAAACCCGGTACCGCGGCCATGAAGCTTGCAGCGCACGAGA
TCGTCTTGTCCGCGACGCCGACCGCCCTGTCTTGGGCGGTGGTTGCCCTA
CTCGCGGACGGCGGGGGTAGGGTAAGTGGCGGGGATTTCGTCGGTGGAGT
TGGTGGGACCAAGGGGAGGGGGCAAGGGCACCTCCTTCCTCGCTCAAGGG
ACAAGTACCCGACTCCGGTGAGAGGGCTGGGGAGTGGGTGGGATAGAGGT
ACCTCGGGGAGAGGTTTCGAACACGGATTGTGAAGTGGGCGAGCTTGGTT
GTGATGTCACGATATCATTTGGTGGTGCTCAAACTGGTATTGCGAATGTT
CTGGTAGATGGCGACGAAACCAAGGGTGTCTTCCTTTAGCGTCGTTGCGG
GCAAATACGCGTGCCCCTATCCGTTTCAAGAGTTGCCCCTCATCGTATCC
AAGCTTGTGTAGCGTGGAATCGAGATTTCACGTTTTTTGCTCGTAGTTCT
ATTTCCCATGTCTCCCGCTGCCTTTCTTCGTCGCATGATACAGAAGCCGC
GCGCCGCCAGACCCGGCCGTCGCCTTCGGTGTTCCTCTACCTCTGTTTCT
CCGCGGTCGTGGTTCCTGCTCCACTGTTACTTTTTTACCCCCTGACCTGC
TTCCGCATCGCTGCATATGTACTCCCTCGGCTATTCAGGGCACCCCAGGC
GTGGACAGCCGACAAGTCAGCCGCCGACTTACCGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1240:7816..14904-

>mRNA_Ecto-sp13_S_contig1240.1993.1 ID=mRNA_Ecto-sp13_S_contig1240.1993.1|Name=mRNA_Ecto-sp13_S_contig1240.1993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1240:7816..14904- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGACCTATCAACGCCGATGCCGGCCTATGTATCCCTCGGATGAT
CCCCTGGCGAGACTGGGATGAGTGGTACAGGGTCAAGGCCCTGCTGTTTT
CTCCCGAGCCCTACCTGCGGTCCCAAGGTGTGCAACACGTGGCCGTCTGG
CAGAGCCGAGAGAGAATACCACACGCTGTGGAGACCACGTCCCAGCTCGT
TGAGGTTCGGCTCAACGACGTAGGTGCGGCAGGGGGAGGGGGGCTGACCT
TTCACGGCGGTCGAAGGAGCGAGGAGGAGCTGCGGCTCATCTACAGCGCC
GTGGTCGTCAGAGCGGTCAACGGCCTTACCGGGCACGAGCAAAAGGCCGC
ATACGCCACGCCCGTGTCTTCCCTGGCGCGAGAGATCGGGCTGCCGACGT
GGATAGTTGACATACGACACGAAGCTGCCCACAAGCAGTTGCCCGGCATT
GTCACCCTTCGGCTCGCGGCGGACTTCCTTATGGACTACCTATGGAGGAG
GCACTGGAGCCCACAGGCTGAGCACCTCGGATTCGTTTGGGGTGCGTTCG
ACCAGTTCATTTGCAGATACAAGGCCACCAGCGATAGCGACGCCTTGCTG
CCGCGCAGCCCTCCCCCCGGCCACGCTGGCCGCTCAAGCAACAAAAAAAC
GCGGACGTCTTCCGCCGCATTCGGCGGCGGGTCTTCATCGAACATAAGTT
ACGGGGATTCCAGCTCGAAGCCTCCCGGCACCCCGCGCGGAGCGGGCTCA
TCAGCGGCATCGAAACCCGGTACCGCGGCCATGAAGCTTGCAGCGCACGA
GATCGTCTTGTCCGCGACGCCGACCGCCCTGTCTTGGGCGGTGGTTGCCC
TACTCGCGGACGGCGGGGGTAGGGTAAGTGGCGGGGATTTCGTCGGTGGA
GTTGGTGGGACCAAGGGGAGGGGGCAAGGGCACCTCCTTCCTCGCTCAAG
GGACAAGTACCCGACTCCGGGCACCCCAGGCGTGGACAGCCGACAAGTCA
GCCGCCGACTTACCGAGAGG
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