mRNA_Ecto-sp13_S_contig8523.19924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8523.19924.1
Unique NamemRNA_Ecto-sp13_S_contig8523.19924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8523.19924.1 vs. uniprot
Match: A0A6H5JTF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.350e-26
Identity = 57/69 (82.61%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  101 MTIALFIRRLSVLVILAFLLLTGMRGGMNGENHSPPENDDPSGEPDHHLLPPWPTSAAAPPTCPAADGG 307
            MTIAL IRRL VLVILAFLLLTGMRGGMN   HSPPE DD SGEP HHL  PWPTSAAA PTCPAA GG
Sbjct:    1 MTIALLIRRLLVLVILAFLLLTGMRGGMNRGGHSPPEADDHSGEPFHHLPLPWPTSAAAAPTCPAAGGG 69
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8523.19924.1 vs. uniprot
Match: D7FU58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU58_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-8
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2 
Query:  305 GDSASGGSMGCQGDGIDQVTLWLFVWLWTCTVASYLGRWLNLARIAFEVLVESKIRVXXXXXXXAARPLPPAPPVAAEENAAEGGPANLA 574
            G++ + G + CQGDG DQ T WL +WL TC +A++LGR   LA   F ++V  ++          ARP PPAP +  ++   EG P N+A
Sbjct:   11 GEAPASGCISCQGDGRDQATYWLLMWLRTCILANFLGRCAKLAWTVFVLMVRRQLEAKRR-----ARPGPPAPVLGDDDE--EGAPPNVA 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8523.19924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTF4_9PHAE6.350e-2682.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU58_ECTSI1.560e-840.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8523contigEcto-sp13_S_contig8523:2..6804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size685
Hectar predicted targeting categorysignal peptide
Exons5
Cds size585
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8523.19924.1prot_Ecto-sp13_S_contig8523.19924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8523 2..6577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.7176716-CDS-Ecto-sp13_S_contig8523:1..2771681464122.7176716-CDS-Ecto-sp13_S_contig8523:1..277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8523 2..277 -
1681464122.7293718-CDS-Ecto-sp13_S_contig8523:3853..39601681464122.7293718-CDS-Ecto-sp13_S_contig8523:3853..3960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8523 3854..3960 -
1681464122.7396803-CDS-Ecto-sp13_S_contig8523:5526..56031681464122.7396803-CDS-Ecto-sp13_S_contig8523:5526..5603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8523 5527..5603 -
1681464122.749765-CDS-Ecto-sp13_S_contig8523:6452..65771681464122.749765-CDS-Ecto-sp13_S_contig8523:6452..6577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8523 6453..6577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.7607784-UTR-Ecto-sp13_S_contig8523:6577..65961681464122.7607784-UTR-Ecto-sp13_S_contig8523:6577..6596Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8523 6578..6596 -
1681464122.7728453-UTR-Ecto-sp13_S_contig8523:6723..68041681464122.7728453-UTR-Ecto-sp13_S_contig8523:6723..6804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8523 6724..6804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8523.19924.1

>prot_Ecto-sp13_S_contig8523.19924.1 ID=prot_Ecto-sp13_S_contig8523.19924.1|Name=mRNA_Ecto-sp13_S_contig8523.19924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MTIALFIRRLSVLVILAFLLLTGMRGGMNGENHSPPENDDPSGEPDHHLL
PPWPTSAAAPPTCPAADGGDSASGGSMGCQGDGIDQVTLWLFVWLWTCTV
ASYLGRWLNLARIAFEVLVESKIRVRARARAGAARPLPPAPPVAAEENAA
EGGPANLAAQAPGGPPVLAGDDAQGGPANLAAQASGAPSVLTDDD
back to top

mRNA from alignment at Ecto-sp13_S_contig8523:2..6804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8523.19924.1 ID=mRNA_Ecto-sp13_S_contig8523.19924.1|Name=mRNA_Ecto-sp13_S_contig8523.19924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8523:2..6804- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATGGAAGCGCACCCTTCATGCGACTCGCCGAATACCTCACGGTGTT
TTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTC
CCTCACGAGTTTGTAGGGATGCTAGGTCGATGGTCTAACGACTTCTGCAT
GCACAACTAACGAGTACGCCCCTCCCCCCTCCCCTGCATTGTTTCTGTGG
CCGGATAGCACCACCCCGCCCCGGGCAATGACGATCGCGTTGTTTATCCG
GAGGCTCTCGGTGCTGGTGATACTGGCGTTCCTCCTCCTGACCGGCATGC
GGGGGGGCATGAACGGAGAGAACCACTCCCCACCTGAGAACGATGACCCT
AGGTACAATACAAGCACACAGAAAGCGCCCGCCGCGCTTATGAATAACCT
TGAGTTTTGGCCAAGGCTAGGGGTCTTAGCTCCTATAGGGTCATTACACG
AATGGCTGCTATCTATGGGTTTTATGCGTGCAGGTTATTGACGGAGCTCA
CAAACGGTGCCGACGTTCTCAGATGTTGACTTTGTTTTGAGGCTCGATTT
CTCAGTTGACTGCCGAGTTCTTGAAGTACGGGCGCTTTCTGCACGCGGCA
ATCCTCCCGGCCTCTTTATCGCTGTCAATATTTGCTTTCACTCGCAACAG
CTTGAACCATGTAGCGAGTACGCTTTGTACCTAGCTAATTAACCGCGGGG
ACTTTGCATAGAACATAGGGGCGGGAAGGGGAGGGGGGGGGCTCAGGGAG
GAAACCTTTGGCGCGGGACGCTGATGATGCCCCTGTTGTACCAGAGAGAG
GCTGAAGGAAAGGGAAGCGAAGTAGGCGCAGATCGGTTTTTCTTCTTCCA
GCGACAACATCATCAGCAAATAGCCGTCTGTTCCTCCATTCCTCGCACAA
GAAGGCACCGCGTGCGCGGCTAGTCTTTCAGTAGTACGCTCTGTCTTACA
AACGCGGGGACCCCTTTCCACCCTTCCTGGTGCTCACTTTCCCCACCTCA
TTGTTGTGCTCTATCTGGCTTCTGATTCCCTTTTTCCTCGTGCATAAACG
GCCGTCATGCTGCTGCCCCTTGGTCTCTAGTCTAGTCTAAGGTGCTGTGT
CCGCTGCATCCCCCCGCCCCCCCCCTGCCGGCGCTCACTTTTCCCACCCG
AAATACTATGTTTGACGTCTGGCTCTCTCCCTTTCCGAACGGTACATACA
GCGGGGAGCCCGATCATCATCTTCTTCCCCCGTGGCCGACCTCCGCCGCC
GCCCCCCCGACATGTCCCGCCGCTGATGGTGCGTACATATTGTACCACGT
TTTTTTTTTATTTTTGTCGCAAGGGAGCGCTGTGGTGCTATGCGGTGGTT
GCTTTTTCTATTGAGTCAGAGGGGGGGGCTATCTATCTCTCTCTCCTTTT
GGTGTGGGTTGTGTTTCCGTTGTCCATGTGTCATGCTTGCTTTTTCGTAC
ACACACCTTGCTTCCTTTTTTCCGGATTCCGGATTTTGTTGCTTTTCATT
TTCTTTTCTTTTTTCGATGCACGACCATTCAGAGGATGCACGTCGTCTCA
TGCCATTTTGAGGTCAAGCCTGCGAGCCACGCATGCATACGATCTACTCT
GTAGTATCGTTTCCCCTGGACACACCGCGATGGGGCGAAAAGGGCGTTGA
CGTAGGTAACACGACGTCAGATGTCACACCCCCCGGACCGATTTCCGAGG
CTCGATTACTACGGTAAGAGGCGGAGAAACGGCACACAGACCCCCTTTGA
CCAAATTTCAAAGGTCGATTGCTCCACAACCAAGGGGGCGCAGAAAGATC
TTGATAATTCTACGGAAAGCTCTCGTACGAGGCATGTCGAAAAACATCAT
ATTTTGGTGTTGGTGTTGGCACAATGAGTGTTGGTTGCGGAGCAGTCGAG
CTTTGAAGATAGGTCTAAAGGGGGGTGATGCCGTATCCCCGTCTCTTGCG
GTGCTCCACGACGAAGAAGAGCATGCGTAAATGAAGCGGTCAGTTTTGGG
AAAGCTCTGGAGCAGACGGTTCTAACGCCACCGTTTTCGACACGCTTGCT
CTGTCTGCTGTGGAGAAATCGATCTTTGAAGATCGGTCCAGAAGGGGGTG
CGATATCTCACGATGTCACCTACTACTTCGATACAAACTTCATACTAGAT
CGACATATTCACAAGGCACACGTCGTTTTATGACGTTTGTGTTTTTTTTT
TCCCAGAGTAGCGTCGCTACAATGTTGTGCTCTTCTCCCCAATCGAATAC
TTACCGGTCGACCTCCCACTAGAGGTACCATGTAGCGGCCGCGGTCATGA
AACAAACCTTTCAGAAAGCAAGTCCCAACAATTTCCTCCACTCGTTGCAA
AGACTCCAACACATCCCGTTCGATTGTGGTTATATCTCGAACGGGTACGA
GCTGTAGTCTTTCTGTGTTCGGACGTATTTTTCATGAAAATTATTGGGGG
ATAGTCTGATAGGTAAGAAAAGTCGACCAAGAAAAAACACACTTAGCTCC
GTGGACCCCAACACTAAATAATGACCTACCGTAAGTTGCATAAGATATCA
CACCCCCTGGACCGATTTTCAAAGCTCGATTTATCAACAACCGAAAAGAG
TCACAGCGCCGAACACAGCGGCGTTGAAGCCGTTTCGTCGAGAGCTCCCT
CAAAATGTATCGTTTCGGTAATTAATGCATCCTCTTTTTCGTGGAGTAAT
CGAGCTTTGGAAATCGGTCCCGGCGGGTGTGCTATCTTTTGTCGCATACG
TGAAGCCTCGATACTCAATCTGACGTTTTCTGAAATTCCGGCGCTAACCT
CTACCGTATGCAATCATTGGTCCTTCGATACTCTTTGCCGCCAGGTGGAG
ATAGCGCCTCGGGGGGCAGCATGGGCTGCCAGGGAGATGGCATTGACCAG
GTCACCCTCTGGCTGTTTGTGTGGCTCTGGACGTGCACGGTAGCATCCTA
TGTGAGTGTTGTTGGTTGACCAGCTTGGAGAGATGCTGCCACTACTGCTG
AACTGCGGTAGGGGGAGTCGCCTCATATTTTTGCGCGTCAGGGTAGGGGG
GGAGACACGGACTCAGTTGGATGCTGCGCTAGGGAGAAAGTCGAGATCGA
GAAGCAGCTAGGTCGTCGTCATCAAGCGTCTGGGAACGAGCAGTTTAGCT
CCTGGAGGGACCGTGACAACCTTGAGTGATGCTGCTGCGGTAAGGGGGTG
TATAATCGATTCATGGTTTCCCACTCTCGGCGATCTAGGGAGGAGACAGG
TACGCTCTACGAAAAAAATTTGACCGCGTCCTGTACGGCCGTCAGAGGGC
CGAAACAGGACCACAGGCTGTCCCCAAGGAACGTACCGCACGTGACGTAA
GATACCATCCCCCCTGTGCCGATTTTTGAAGCTTGAGTACTCCACGACGA
AGGGGGTGCGTAAACCCAGCGAGACATTGTTCAAAAGCTCTCGACGAGAC
GGTTCCCAAACCACCGTTCCCGGCACCGCCACTCTTTTGTGGTGTGGAAC
AACCGATCTTTGAAAGTTGGTCCAGGGGGTGTGGTATCCTCTGTCCCTGA
CGGAAGGATTTCGCCCCCCCAAAGCTGGACCGCCGAATCTTGTGAGCATC
GCTCCTTTTTTTTTGTGATTCTACGCTGTATGTATTAAAAAAACAGAGCC
GCCACACGACACTTTCTGTACTTCTTCGCTCCGAGACGCAGCGAGCTGCA
GCAAATATAAACGCCTTCTGCTTGTAGGTTACACAACGCCTACGATGACA
GCAAACGATATGTGCGCAAAAGCACGTCACCGAGAATTTTTTTACGCGTT
GATACTGAAGGCTATTCTTCCCCTTTTTAGTGATCAGCTTTCGGTTGCTC
TCGCGGGTATATTTTGGTAAATCTCTTCATGGCTCAGTGCACCCTCTCCG
TGAAATGTGCGGACAATAAGGGGTCCTCCGGCCGGTACTCCTCAGACAAC
GTCTTCGTTTTTTCGTACCCTCCCTACCCCTGCGGGAACAATCCTCCGTC
CTCTCAAGGACGCGTTGTTGTTAGATGTACAGTAATATCCGCTATGATAC
AAGTCAGCTATGCTGTACATCTAACAAGAGTAGGCCAATATCCTAACCGC
AGAGGCATGGAAAACATGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCTCCCCCCCCCCCCGCCCCCCCCCGGCGGGTTTTGTGTGTTT
AGGTGCACACTGGACTCTTTTTATTTTTTCTNNNNNNNNNNAGTCCCCAA
TGCTGTTAATCAAAAAAAGTATGGACAAATCCCCCCCCCCAAGGGGATGG
AAAACATGGATACCCCCCCCCCCCCCCCCCCTTCCCTTGCGTATCGTATC
ATCCCGTCATCCATGGGGTGCGAGGTTTGTGGTAGACCGACTACCGTCAT
GCGTTTTTATGAGTACCCTCGGCGAAATCCCGCATATCGTAGCTCTGTCC
CGGCTTTGTAGGGATGCGAGGTCAATGGTCTAAGGACTACGGCATGCGTT
CACGTTGCATAAGCACCCCTCCCCTCCAAAGTTGCATGTATATTTTGACC
ACATTTATATTAGCCGGGGGGTTCTATCTGCAGGTCTACTGCACTGCACC
GCTGGTTGCACACATACGTGAGATACCACACCCCCTGGACCGATTTTCAA
AGCTCGACTTACTCGACGAGACGGTCCGACTATTTTGCCGAGTAGCTTCG
AAACTGGGTCCACGCGGGGGTTGGTGTCTTAGGTATGCAACCTACGGTAG
GTGGTCGGGTCGGCCTCGACACCTTCCCGCGGATGATTCGGGAATAATTC
GAATCTAGACGACTGTTAGTGCTCCGCGTACAGCCACCAAGCGGCAGTTA
GTAACATGTACAAGTGAAACAAGAAAAATGATTTCTGACTCCATTCTTTG
ATAGAGATGGATTCGTTGGGTTATAAACTGACAATATATAAAAAAGGGAC
CAGTTTAGTGTCTCTTGCAAAACGGTTTGCCGAGAGCCCTTGCCGCAGGT
TGCATCCATACCCAAGACACCACACCCCCTTGCCGAAAACCCTCGCCGTA
GGTTTCATACATACGCAAGATACCACACATGGACCGACCGAGTTCCAGAG
CTCGACTACTCCACCACCAAAAAGAAGAGAGTGTCGAAATCAAATGATAA
TGTGCATACGTTTCCGGAATGCTCTCGACAAGACGGCCCGAAACAACGCC
GCCATTTTCGGCACCTCCACTCTTTTCTCCTGTAAGAGAAAGTGAGCTCT
GAGAATCCTTTTGCGAGATCGGTGACAAAAGATGGTCACGAACGTTACTA
CAGTCGGGGTCCCTGTTTACCGGTAAGTGCCCAGAAAATTCACCGGCACT
TTACCGGACCGGCACAATTCAAAGTACGGCCAACGACTTGGAAATTCAGT
GTGTACCCGCCGCAAAAAACCGGCACTCTTCAGGGCGTTGGCGCTATTCA
ACCGACTCGAGACAGGGCCCCTCACTGTAGAAACAGAGAGCGCCGGTGAA
CCAAGTGGGATGCTACCGGTGACGAAAGATCAGATTTCTGCCCGGCTTAG
CTCATTGTTCGGCGTATGTTTTCTACAAGACCCCCTTCCCCTGCACTCCC
TCTCATGCATGTACCCCTGGACACATCGACATACTGATTTGCTTGCCGAA
GGTTGCATGAGAACCGTAGGTTGCATAAGATACCACACCCCATGGAACAA
ATTTCGGAGGATGCGTTGCCGGAAATGTCTCGACGAGACAGTTCCAACGC
CTCCTGCCATTTTCGGCACCGTCACTGCTTTTCCTGCCGAGTAATCGAGC
TTTGAAAATCAAACTAGGGGGTTCGAAGTCTTTGGTATGCAACCTACGGC
ACCACGCTTGCGATCCGTTAGGGGTGCTCAGCTGCACGCGATTCGTCTGC
TCGGCAAGCCCACCGCTTCCTTGTGAGAAACCTATTTACGGTAAATTACC
CGCTATGTTTCTCAATATGACACAAGGAATCCATCTCTATCTATAGAAAA
GAGTCTACGACAGACAAGCAATGAATTCATAGCATCAGCGCAGGGTGCCC
ACACAAAAGTGCTAACGACACCCACGTCCTGGAGATGTCGAAATGGAAAA
AAATCGGTGGTGCCATAATTGCGAGAAAAGTTCAAAGACACCAAAGTTTT
TGGGATTTTTATTTTACTTGATTTTTGTATGTCCCCCTCCTCCAACCTCA
GCGCCTCTGGAGGGTACATGGTTGTCATAAAATATTCTTTCCCTGCACAA
TGTTGGTTGGGTTTTCCATAAATTTCTACGCAGTTTTTTTCTGGATAAAG
TGTACAACTACAAGCGGCAAAGTTGAGTGTGCGCGCCCCCCGTTCGGTCT
TTCTTTTTGTTGTTTCGAAATAGGGGACTTAACTTTCTGTGCGTTGGCAG
TCGAAATGAACTCCGACCTGACTCTCTTCTCCCCTTGCCTTACTTGGCTC
TCCTTTGCCCGCTTGCTCTCTCTCTCTCGTTTTCGTCTGGGTGCTGCTGC
TTACTTGCATGCTTGTGCTGCCGCCAGCTGGGGCGGTGGCTCAACCTCGC
GCGCATCGCGTTCGAGGTGTTGGTGGAGTCCAAGATAAGGGTGAGGGCGA
GGGCGAGGGCGGGGGCGGCACGCCCCCTCCCACCCGCGCCACCGGTGGCG
GCAGAGGAGAACGCGGCCGAGGGGGGCCCGGCGAATCTCGCGGCGCAGGC
ACCGGGTGGTCCTCCTGTGCTAGCGGGCGATGATGCCCAGGGGGGCCCGG
CGAATCTCGCGGCGCAGGCATCGGGTGCTCCTTCGGTACTGACAGACGAT
GAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8523:2..6804-

>mRNA_Ecto-sp13_S_contig8523.19924.1 ID=mRNA_Ecto-sp13_S_contig8523.19924.1|Name=mRNA_Ecto-sp13_S_contig8523.19924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8523:2..6804- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATCGCGTTGTTTATCCGGAGGCTCTCGGTGCTGGTGATACTGGC
GTTCCTCCTCCTGACCGGCATGCGGGGGGGCATGAACGGAGAGAACCACT
CCCCACCTGAGAACGATGACCCTAGCGGGGAGCCCGATCATCATCTTCTT
CCCCCGTGGCCGACCTCCGCCGCCGCCCCCCCGACATGTCCCGCCGCTGA
TGGTGGAGATAGCGCCTCGGGGGGCAGCATGGGCTGCCAGGGAGATGGCA
TTGACCAGGTCACCCTCTGGCTGTTTGTGTGGCTCTGGACGTGCACGGTA
GCATCCTATCTGGGGCGGTGGCTCAACCTCGCGCGCATCGCGTTCGAGGT
GTTGGTGGAGTCCAAGATAAGGGTGAGGGCGAGGGCGAGGGCGGGGGCGG
CACGCCCCCTCCCACCCGCGCCACCGGTGGCGGCAGAGGAGAACGCGGCC
GAGGGGGGCCCGGCGAATCTCGCGGCGCAGGCACCGGGTGGTCCTCCTGT
GCTAGCGGGCGATGATGCCCAGGGGGGCCCGGCGAATCTCGCGGCGCAGG
CATCGGGTGCTCCTTCGGTACTGACAGACGATGAT
back to top