prot_Ecto-sp13_S_contig8523.19924.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8523.19924.1
Unique Nameprot_Ecto-sp13_S_contig8523.19924.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length195
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8523.19924.1 vs. uniprot
Match: A0A6H5JTF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.400e-25
Identity = 57/69 (82.61%), Postives = 57/69 (82.61%), Query Frame = 0 
Query:    1 MTIALFIRRLSVLVILAFLLLTGMRGGMNGENHSPPENDDPSGEPDHHLLPPWPTSAAAPPTCPAADGG 69
            MTIAL IRRL VLVILAFLLLTGMRGGMN   HSPPE DD SGEP HHL  PWPTSAAA PTCPAA GG
Sbjct:    1 MTIALLIRRLLVLVILAFLLLTGMRGGMNRGGHSPPEADDHSGEPFHHLPLPWPTSAAAAPTCPAAGGG 69
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BLAST of mRNA_Ecto-sp13_S_contig8523.19924.1 vs. uniprot
Match: D7FU58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU58_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 8.570e-9
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:   69 GDSASGGSMGCQGDGIDQVTLWLFVWLWTCTVASYLGRWLNLARIAFEVLVESKIRVXXXXXXXAARPLPPAPPVAAEENAAEGGPANLA 158
            G++ + G + CQGDG DQ T WL +WL TC +A++LGR   LA   F ++V  ++          ARP PPAP +  ++   EG P N+A
Sbjct:   11 GEAPASGCISCQGDGRDQATYWLLMWLRTCILANFLGRCAKLAWTVFVLMVRRQLEAKRR-----ARPGPPAPVLGDDDE--EGAPPNVA 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8523.19924.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTF4_9PHAE1.400e-2582.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU58_ECTSI8.570e-940.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..195
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.753
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8523contigEcto-sp13_S_contig8523:2..6577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8523.19924.1mRNA_Ecto-sp13_S_contig8523.19924.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8523 2..6804 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8523.19924.1 ID=prot_Ecto-sp13_S_contig8523.19924.1|Name=mRNA_Ecto-sp13_S_contig8523.19924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MTIALFIRRLSVLVILAFLLLTGMRGGMNGENHSPPENDDPSGEPDHHLL
PPWPTSAAAPPTCPAADGGDSASGGSMGCQGDGIDQVTLWLFVWLWTCTV
ASYLGRWLNLARIAFEVLVESKIRVRARARAGAARPLPPAPPVAAEENAA
EGGPANLAAQAPGGPPVLAGDDAQGGPANLAAQASGAPSVLTDDD
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