mRNA_Ecto-sp13_S_contig85204.19920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85204.19920.1
Unique NamemRNA_Ecto-sp13_S_contig85204.19920.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Match: D7FJI8_ECTSI (TCTP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.690e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEV 111
            MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEV
Sbjct:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEV 37
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BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Match: H6WBA0_VAULI (TCTP domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA0_VAULI)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVRKQ 120
            MIVY DLISGDEMMTDAF   PV+ + GE VEG+FEV  +
Sbjct:    1 MIVYADLISGDEMMTDAFKIKPVMNSKGEKVEGLFEVESE 40
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BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Match: A0A835YS00_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS00_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.390e-8
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVRKQ 120
            MIVY D+++GDEMMTDAF + PV+ ++G  VEG+FEV  Q
Sbjct:    1 MIVYTDMVTGDEMMTDAFKKLPVLDDEGNPVEGLFEVESQ 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJI8_ECTSI3.690e-17100.00TCTP domain-containing protein n=2 Tax=Ectocarpus ... [more]
H6WBA0_VAULI1.220e-867.50TCTP domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A835YS00_9STRA4.390e-860.00Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85204contigEcto-sp13_S_contig85204:437..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.3
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog2880.D7FJI8
Preferred nameTPT1
Model size144
KEGG koko:K20301
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000909,GO:0001932,GO:0001934,GO:0002181,GO:0003006,GO:0003674,GO:0005085,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0007049,GO:0007093,GO:0007095,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008361,GO:0009058,GO:0009059,GO:0009314,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010212,GO:0010332,GO:0010389,GO:0010467,GO:0010494,GO:0010562,GO:0010564,GO:0010604,GO:0010638,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012505,GO:0015631,GO:0016043,GO:0019220,GO:0019222,GO:0019538,GO:0019725,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0022603,GO:0023051,GO:0023057,GO:0030001,GO:0030003,GO:0030154,GO:0030234,GO:0030582,GO:0030584,GO:0031012,GO:0031056,GO:0031058,GO:0031155,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033043,GO:0033044,GO:0033127,GO:0033129,GO:0033554,GO:0034305,GO:0034599,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0040008,GO:0040014,GO:0040018,GO:0042173,GO:0042174,GO:0042221,GO:0042325,GO:0042327,GO:0042592,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043900,GO:0043902,GO:0043937,GO:0043939,GO:0043943,GO:0043944,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044818,GO:0045595,GO:0045596,GO:0045786,GO:0045793,GO:0045927,GO:0045930,GO:0045937,GO:0046483,GO:0046872,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051020,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060548,GO:0061458,GO:0062039,GO:0062040,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070796,GO:0070798,GO:0070838,GO:0070887,GO:0071214,GO:0071470,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0075259,GO:0075260,GO:0075261,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090304,GO:0097708,GO:0098727,GO:0098771,GO:0098772,GO:0104004,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902058,GO:1902060,GO:1902229,GO:1902230,GO:1902275,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903047,GO:1903664,GO:1903665,GO:1905269,GO:1990624,GO:1990904,GO:2000026,GO:2000241,GO:2000243,GO:2000383,GO:2000384,GO:2000736,GO:2001020,GO:2001021,GO:2001233,GO:2001234,GO:2001242,GO:2001243,GO:2001252
Exons1
EggNOG free text desc.microtubule binding
EggNOG OGsKOG1727@1,KOG1727@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.4386916-CDS-Ecto-sp13_S_contig85204:436..5801681464122.4386916-CDS-Ecto-sp13_S_contig85204:436..580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85204 437..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85204.19920.1prot_Ecto-sp13_S_contig85204.19920.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85204 437..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85204.19920.1

>prot_Ecto-sp13_S_contig85204.19920.1 ID=prot_Ecto-sp13_S_contig85204.19920.1|Name=mRNA_Ecto-sp13_S_contig85204.19920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVRKQRWCFLSS*
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mRNA from alignment at Ecto-sp13_S_contig85204:437..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85204.19920.1 ID=mRNA_Ecto-sp13_S_contig85204.19920.1|Name=mRNA_Ecto-sp13_S_contig85204.19920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85204:437..580- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTCTACAAGGACTTGATCAGCGGTGACGAGATGATGACGGACGC
ATTCCCGCAAAACCCTGTGGTCGGCAACGACGGCGAAACCGTCGAGGGCA
TGTTCGAGGTACGTAAGCAACGGTGGTGTTTCCTCTCAAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85204:437..580-

>mRNA_Ecto-sp13_S_contig85204.19920.1 ID=mRNA_Ecto-sp13_S_contig85204.19920.1|Name=mRNA_Ecto-sp13_S_contig85204.19920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85204:437..580- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTCTACAAGGACTTGATCAGCGGTGACGAGATGATGACGGACGC
ATTCCCGCAAAACCCTGTGGTCGGCAACGACGGCGAAACCGTCGAGGGCA
TGTTCGAGGTACGTAAGCAACGGTGGTGTTTCCTCTCAAGTTGA
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