prot_Ecto-sp13_S_contig85204.19920.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig85204.19920.1
Unique Nameprot_Ecto-sp13_S_contig85204.19920.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Match: D7FJI8_ECTSI (TCTP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.690e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 
Query:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEV 37
            MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEV
Sbjct:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEV 37
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BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Match: H6WBA0_VAULI (TCTP domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA0_VAULI)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0 
Query:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVRKQ 40
            MIVY DLISGDEMMTDAF   PV+ + GE VEG+FEV  +
Sbjct:    1 MIVYADLISGDEMMTDAFKIKPVMNSKGEKVEGLFEVESE 40
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BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Match: A0A835YS00_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS00_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.390e-8
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 0 
Query:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVRKQ 40
            MIVY D+++GDEMMTDAF + PV+ ++G  VEG+FEV  Q
Sbjct:    1 MIVYTDMVTGDEMMTDAFKKLPVLDDEGNPVEGLFEVESQ 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85204.19920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJI8_ECTSI3.690e-17100.00TCTP domain-containing protein n=2 Tax=Ectocarpus ... [more]
H6WBA0_VAULI1.220e-867.50TCTP domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A835YS00_9STRA4.390e-860.00Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018105Translationally controlled tumour proteinPFAMPF00838TCTPcoord: 1..35
e-value: 4.4E-7
score: 30.4
IPR011323Mss4/translationally controlled tumour-associated TCTPGENE3D2.170.150.10coord: 1..42
e-value: 4.3E-7
score: 32.1
IPR034737Translationally controlled tumour protein (TCTP) domainPROSITEPS51797TCTP_3coord: 1..47
score: 14.008
IPR011057Mss4-like superfamilySUPERFAMILY51316Mss4-likecoord: 1..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85204contigEcto-sp13_S_contig85204:437..580 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85204.19920.1mRNA_Ecto-sp13_S_contig85204.19920.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig85204 437..580 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig85204.19920.1 ID=prot_Ecto-sp13_S_contig85204.19920.1|Name=mRNA_Ecto-sp13_S_contig85204.19920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVRKQRWCFLSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018105Translational_control_tumour_p
IPR011323Mss4/transl-control_tumour
IPR034737TCTP
IPR011057Mss4-like_sf