mRNA_Ecto-sp13_S_contig852.19919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig852.19919.1
Unique NamemRNA_Ecto-sp13_S_contig852.19919.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5K6L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L0_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.090e-51
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 3 
Query:  564 MNKFITVAFGLALTQQLLTSLTTDTPGAVAAEDAAGFPESFARSCLLAQSSDESEALLSWPAISAGAASAAYLGGLRCAAGGMLNEGTFFLFEVGLKTIINLIILRSLTFLTPSFQGPF 920
            MNK   VAFGLAL Q+LL+SLTTDTPGA  A+DAAGF ES   SCLLAQSSDESEALLSWPA+SAGAASAA LGGL CAAGGML+E T FLFEVGLKTIINLIILRS +FLTP FQGPF
Sbjct:    1 MNKLTMVAFGLALAQKLLSSLTTDTPGAATADDAAGFAESLTWSCLLAQSSDESEALLSWPALSAGAASAACLGGLSCAAGGMLDEATLFLFEVGLKTIINLIILRSPSFLTPRFQGPF 119
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: D7FU52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU52_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.610e-46
Identity = 95/124 (76.61%), Postives = 101/124 (81.45%), Query Frame = 3 
Query:  546 AETSLSMNKFITVAFGLALTQQLLTSLTTDTPGAVAAEDAAGFPESFARSCLLAQSSDESEALLSWPAISAGAASAAYLGGLRCAAGGMLNEGTFFLFEVGLKTIINLIILRSLTFLTPSFQGP 917
            +E S  MN FI VAFG AL QQLL+ LTTDTPGAV+A DAA F ES ARSCLLAQ SD+SEA+L WPAISAGAA A  LG L CAAGGML+EGT FLFEVGLKTIINLIILRSL FL P FQGP
Sbjct:   17 SEISRRMNNFIVVAFGAALIQQLLSLLTTDTPGAVSAGDAADFAESSARSCLLAQPSDQSEAVLPWPAISAGAARAVCLG-LSCAAGGMLDEGTLFLFEVGLKTIINLIILRSLRFLAPRFQGP 139
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5JFL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL5_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 8.520e-45
Identity = 87/118 (73.73%), Postives = 98/118 (83.05%), Query Frame = 3 
Query:  564 MNKFITVAFGLALTQQLLTSLTTDTPGAVAAEDAAGFPESFARSCLLAQSSDESEALLSWPAISAGAASAAYLGGLRCAAGGMLNEGTFFLFEVGLKTIINLIILRSLTFLTPSFQGP 917
            MN+ I VAFG+A+ QQLL+SLTTDTPGAV+AEDAA F ESFARSCLL Q  D+SEAL+ WPA+SAGAA AA L GL C AGGML++GT FLFEVGLKT INLII+RSL FL   FQGP
Sbjct:    1 MNELIMVAFGVAVIQQLLSSLTTDTPGAVSAEDAADFAESFARSCLLPQPPDQSEALVPWPAVSAGAARAACLVGLSCVAGGMLDKGTLFLFEVGLKTFINLIIIRSLRFLASMFQGP 118
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5K6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.520e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = -2 
Query:  340 VVHAVVVRPSTSHPCKAGTKHDGFSPDQALTSPSAKLRKVFGESHEGRAASC 495
            VVHAVVVRP TSHP +AGT+H GFS DQALTSPSAK R++FGESHEG AASC
Sbjct:  189 VVHAVVVRPLTSHPYEAGTEHAGFSADQALTSPSAKRREIFGESHEGCAASC 240
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: D7G967_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G967_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.560e-15
Identity = 56/98 (57.14%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  564 MNKFITVAFGLALTQQLLTSLTT-DTPGAVAAEDAAGFPESFARSCLLAQSSDESEALLSWPAISAGAASAAYLGGLRCAAGGMLNEGTFFLFEVGLK 854
            MNKF+ VA GLA+ Q+   S     T GAV+ E+ AGF E FARSCLLA+SS+ESEALLSWPA+SAGAA AA LG L        N   FF    GLK
Sbjct:    5 MNKFMMVAIGLAVIQRAFFSPAAGSTSGAVSGEELAGFAERFARSCLLARSSEESEALLSWPAVSAGAARAACLGTL------FFNR-VFFFDRFGLK 95
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5J7U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.370e-10
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = -2 
Query:  379 GGGRGVHSRVVHAVVVRPSTSHPCKAGTKHDGFSPDQALTSPSAKLRK 522
            GGG G    VVHAVV+RP TSHPCKAGT+H GFS DQALTSPSAK R+
Sbjct:  379 GGGAGGVLIVVHAVVMRPLTSHPCKAGTEHAGFSLDQALTSPSAKRRE 426
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5KPG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.990e-9
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  264 TRK*IKSYAAFIRTQGRKHKMPNTLSRMQRALHATRRIPYGAS 392
            T+K IKSYAA IR QG KH MPNTLSRMQ  LHATR I +GAS
Sbjct:    9 TKKSIKSYAALIRMQGTKHNMPNTLSRMQHTLHATRPISHGAS 51
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5KAH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.110e-9
Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = -2 
Query:  316 GTKHDGFSPDQALTSPSAKLRKVFGESHEGRAASC*GCSASCA 444
            G  H GFSPDQALTS SAK R+VFGESHEG AASC   SASCA
Sbjct:  102 GGGHAGFSPDQALTSASAKRREVFGESHEGCAASCQAYSASCA 144
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5K5P3_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.420e-7
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = -2 
Query:  340 TKHDGFSPDQALTSPSAKLRKVFGESHEGRAASC 441
            T+H GFSPDQALTSPSAK R++FGESHEG AASC
Sbjct:  665 TEHAGFSPDQALTSPSAKRREIFGESHEGCAASC 698
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BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.130e-6
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 2 
Query:  344 DAARPSCDSPNTLRSFALGDVRAWSGENPSC 436
            DAA PSCDSPN  R FALGDVRAWSGENP+C
Sbjct:  508 DAAHPSCDSPNISRRFALGDVRAWSGENPAC 538
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig852.19919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K6L0_9PHAE2.090e-5181.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU52_ECTSI2.610e-4676.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFL5_9PHAE8.520e-4573.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6Y7_9PHAE1.520e-1680.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G967_ECTSI5.560e-1557.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7U0_9PHAE1.370e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPG4_9PHAE1.990e-974.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAH1_9PHAE5.110e-976.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5P3_9PHAE7.420e-782.35Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5JKA8_9PHAE1.130e-683.87Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig852contigEcto-sp13_S_contig852:2621..5091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size952
Hectar predicted targeting categorysignal peptide
Exons4
Cds size360
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig852.19919.1prot_Ecto-sp13_S_contig852.19919.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig852 3184..5062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.3374124-UTR-Ecto-sp13_S_contig852:2620..31831681464122.3374124-UTR-Ecto-sp13_S_contig852:2620..3183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig852 2621..3183 +
1681464122.3999991-UTR-Ecto-sp13_S_contig852:5062..50911681464122.3999991-UTR-Ecto-sp13_S_contig852:5062..5091Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig852 5063..5091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.3502874-CDS-Ecto-sp13_S_contig852:3183..33441681464122.3502874-CDS-Ecto-sp13_S_contig852:3183..3344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig852 3184..3344 +
1681464122.3673568-CDS-Ecto-sp13_S_contig852:3652..37111681464122.3673568-CDS-Ecto-sp13_S_contig852:3652..3711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig852 3653..3711 +
1681464122.3810873-CDS-Ecto-sp13_S_contig852:4446..45351681464122.3810873-CDS-Ecto-sp13_S_contig852:4446..4535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig852 4447..4535 +
1681464122.3903992-CDS-Ecto-sp13_S_contig852:5011..50621681464122.3903992-CDS-Ecto-sp13_S_contig852:5011..5062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig852 5012..5062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig852.19919.1

>prot_Ecto-sp13_S_contig852.19919.1 ID=prot_Ecto-sp13_S_contig852.19919.1|Name=mRNA_Ecto-sp13_S_contig852.19919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MNKFITVAFGLALTQQLLTSLTTDTPGAVAAEDAAGFPESFARSCLLAQS
SDESEALLSWPAISAGAASAAYLGGLRCAAGGMLNEGTFFLFEVGLKTII
NLIILRSLTFLTPSFQGPF*
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mRNA from alignment at Ecto-sp13_S_contig852:2621..5091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig852.19919.1 ID=mRNA_Ecto-sp13_S_contig852.19919.1|Name=mRNA_Ecto-sp13_S_contig852.19919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig852:2621..5091+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAGCGATGTTGTAA
AACAAGTCGATCACTTCGTGCGCTCGGCAACCAGGTTACGCTTTTTTTTT
GTGTCTATGTTTTTTTATTTTTCCAGTAAACATGAATGGTGGTCGAGTAG
ATGATGTTGTGCGGGGTCGAGAACTCTCACTCCGCGCAAGAGGATACTCG
CACCCCGTTGTGTTAAAAGGTCAACCACCCTCGAGGCAGTTACAAAGTGC
TTACAACTAAAGCACCAGAAAATAAATCAAGTCGTACGCAGCTTTCATCC
GTACGCAAGGAAGGAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAG
CGCGCCCTTCATGCGACTCGCCGAATACCTTACGGAGCTTCGCGCTTGGT
GATGTGAGAGCCTGGTCCGGTGAGAACCCGTCGTGCTTCGTCCCGGCTTT
GCAGGGATGCGAGGTCGATGGTCTAACAACTACGGCGTGCACGACCCTTG
AGTGCACCCCCCTCCCTCCCCCACCCTACGGTACGCGCGTGTTTGGCAGA
AACGTCCCTCAGCATGAACAAGTTCATCACGGTCGCCTTCGGTTTAGCCC
TTACCCAGCAGCTGTTGACTTCGCTGACCACGGACACGCCGGGAGCCGTT
GCCGCGGAAGACGCGGCCGGCTTCCCCGAAAGCTTTGCAAGGAGTTGCTT
GTTGGCCCAGTCTTCCGATGAAAGGTGGGTATATATTACCACGCGAGACT
CTCACACCACGTTCTTGCTGCCGCTAAAAGGGGCATCAAATAGCCTTTCA
ACAAACAGAGTATATACGCCTCGTCAGGAGCTTGCATATACGTGCGTTTC
GTCCAAATATATTCATTTGTTTGACACAAGGAGGATTCGTCCAACAAAAG
TTGCTGTGAATTTATCGGGCCGCAAGCGATCTCACTTGTTTGTGCTTGTG
AAGTGTCTCCAATTTCCCCGCTCAACCCGCCTTTTTCCCCATTCGCGCGC
CCAAACGATGTTTTGCACCAAAAACGATGCAGCGAGGCCCTCCTATCGTG
GCCCGCTATCTCCGCGGGTGCTGCAAGCGCGGCATACCTCGGTACGCTTT
CATTTGTCATTGTTTCAACCGTTTCGAATAAAGACCCCGCTAGATCTCGT
TGTTTACACCTTGGCTTGCGTCCGTGCGACTAGTTCGTGCTATGAGGAGC
ATGAGCTTACACTCGTCTTGTCTCTAGTGTTTTTGTTTATAATGTTTGCA
TCGATTGCGCAAACCGGCTGACCGATGGAAATTGCAGGTGTGTGTGTTCG
CCGCTTTAATCTGGCACCAGTCTGTACTCCCCTTGATGTTGTATCTATGG
GATGTATCATGTATCCGCCGGGGTCAGACAGACAGGAGGAAGGTGGCCAT
ATTTTGATCACATCGTTGTCCTCCTTCGGTTCTCGCCTAAGCGTTTTCTG
TTCGCTGTTTGTATGTTGTTGCCCACATTAGCCCTTGGCATGTCCGCGCA
CAAGCTAGAGAGTTTCTCACCTCCCACCGCGAAATTTTATGATCTTGCCT
TCTCTCTGTGCGTCAACGCCGCACAGGGATCCGTCGGCTGGCCCCTCACG
TCCCCTCAACGGTTGCGCTGTGACTTGATTACATAGACGTTCTGTTTCAG
ACACTAACAAACGTCGGTTGAAGCGCCGCACCACTTAAACAGCTCAGTTG
ATCATCGTCCACAATTCCACGAGGATCACGCCCAGGTCTTTTACTCTGCT
GCTCTGCTTCGCCCTCTTTGTCTGCCTGTCCCTCTCTGTTTGTCTCTCTC
TCGACTGTGTCACAATCATTTGTCAGGAGGGTTGAGATGCGCTGCGGGAG
GGATGTTGAACGAGGGCACGTTTTTTCTGTTCGAGGTGGGGTTGAAGACC
ATCATTAATTTAATTGTGAGAAGAGGCTTACGCACACGTTGCTGAAGCTG
TTAGATTATTATTTTTTCGAATCGTCTAGATTTCCACTCGTTTGCGTTTT
GGGTGTTTTGTGCTTCCATTGGCATGCGTGTGTGGAGTTTTGTAGCCTCG
CGTTTGGACACAAGTTCGTTGCTCTTTTACGAGTGTCTATCACGCCCCAA
GTCGTGGCCGTTCACTCTACAGTCTCATCCAACTAAAGTCGGGCCGATAG
AAGAGTCTTTGGCCGCTACGGTTGACTGCATAATCTCCTAAAACATTTCT
CCCTCGTCGAGTCTTTGCTATGGGCGATCACTGTTCGCTGGAAGGGGGTG
AGTCGGAAGACAACCCTCTCACCTCACACCGACGGCCACGCTGACTACTG
TTTCAAGTGTCGGACAGGTAGGTTCCCAATGATGTGGTGACACTAACGTT
GGTATGTACCGTCCCTCGTGTGTGCGTATGTTGTCCGACAGATACTCCGA
AGCCTGACTTTCCTCACACCGAGTTTTCAAGGACCATTCTAACAGGGCAC
GCATGGGCAAAGAAAGCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig852:2621..5091+

>mRNA_Ecto-sp13_S_contig852.19919.1 ID=mRNA_Ecto-sp13_S_contig852.19919.1|Name=mRNA_Ecto-sp13_S_contig852.19919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig852:2621..5091+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAGTTCATCACGGTCGCCTTCGGTTTAGCCCTTACCCAGCAGCT
GTTGACTTCGCTGACCACGGACACGCCGGGAGCCGTTGCCGCGGAAGACG
CGGCCGGCTTCCCCGAAAGCTTTGCAAGGAGTTGCTTGTTGGCCCAGTCT
TCCGATGAAAGCGAGGCCCTCCTATCGTGGCCCGCTATCTCCGCGGGTGC
TGCAAGCGCGGCATACCTCGGAGGGTTGAGATGCGCTGCGGGAGGGATGT
TGAACGAGGGCACGTTTTTTCTGTTCGAGGTGGGGTTGAAGACCATCATT
AATTTAATTATACTCCGAAGCCTGACTTTCCTCACACCGAGTTTTCAAGG
ACCATTCTAA
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