mRNA_Ecto-sp13_S_contig8518.19918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8518.19918.1
Unique NamemRNA_Ecto-sp13_S_contig8518.19918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8518.19918.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.460e-37
Identity = 94/118 (79.66%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 DGGHGEREPRSTSPSRTRRRGGSEGAAAAGLSGENPERRRAGGWIPIDAPGEERRGSDHGXXXXXPSSSVSRRASLSRTTGGIGRGHGGSSS-RSTRGASSRNRSGKDTDAPSWLGRK 351
            DGGH EREPR          GGSEGAAAAGLSGE PERRR+GGWIPIDAPGEERRGSDH XXXXX    VSRRAS S+TTGGIGRGHGGSSS RSTRGASS+NRSG DTD PSWLGRK
Sbjct: 1294 DGGHEEREPR----------GGSEGAAAAGLSGEKPERRRSGGWIPIDAPGEERRGSDHXXXXXXXXXXVSRRASFSKTTGGIGRGHGGSSSSRSTRGASSKNRSGNDTDGPSWLGRK 1401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8518.19918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI7_ECTSI2.460e-3779.66Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8518contigEcto-sp13_S_contig8518:701..1476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score154.8
Seed ortholog evalue2.4e-35
Seed eggNOG ortholog2880.D7FKI7
Preferred nameTBC1D23
Model size776
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
Exons1
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
Cds size354
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.2853694-CDS-Ecto-sp13_S_contig8518:700..10541681464122.2853694-CDS-Ecto-sp13_S_contig8518:700..1054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8518 701..1054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.2974575-UTR-Ecto-sp13_S_contig8518:1054..14761681464122.2974575-UTR-Ecto-sp13_S_contig8518:1054..1476Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8518 1055..1476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8518.19918.1prot_Ecto-sp13_S_contig8518.19918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8518 701..1054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8518.19918.1

>prot_Ecto-sp13_S_contig8518.19918.1 ID=prot_Ecto-sp13_S_contig8518.19918.1|Name=mRNA_Ecto-sp13_S_contig8518.19918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
DGGHGEREPRSTSPSRTRRRGGSEGAAAAGLSGENPERRRAGGWIPIDAP
GEERRGSDHGGGGRRPSSSVSRRASLSRTTGGIGRGHGGSSSRSTRGASS
RNRSGKDTDAPSWLGRK*
back to top

mRNA from alignment at Ecto-sp13_S_contig8518:701..1476+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8518.19918.1 ID=mRNA_Ecto-sp13_S_contig8518.19918.1|Name=mRNA_Ecto-sp13_S_contig8518.19918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8518:701..1476+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGGCCACGGGGAGAGAGAGCCGAGGTCTACCTCCCCGTCCCGGAC
ACGGCGAAGGGGGGGGAGCGAGGGCGCCGCGGCCGCGGGGCTGAGCGGAG
AGAACCCGGAGCGGCGACGTGCCGGGGGATGGATACCTATTGACGCGCCG
GGGGAAGAGCGGCGAGGGAGTGACCATGGCGGCGGCGGACGGCGCCCGTC
GTCATCCGTGTCCCGGCGCGCTAGCTTAAGCAGAACCACGGGTGGTATCG
GGAGGGGCCACGGTGGCAGTAGTAGTCGGAGCACGCGGGGCGCCTCGAGC
AGGAATCGAAGCGGGAAGGACACGGATGCTCCGTCATGGCTTGGTCGAAA
ATAGCGACGTGTTTCGTCGCCGCCGCCGCCGCCGCCGGTGTGGGGCCGAC
AAATTATAGTTTTAACACGTGTACGGTATGTGTGCTAGACGCGGGTGTGT
GCTGATGTAAAATTTTGGGGGTGGCACCCATGTTTTTATTTTTTTGTTAA
GTGTGGCGTGGAAATGCTGGTTGGTCTCTTGGTATGTGGTGTTGATAATT
ATTTTAAAATCTTTGTTCGTTTGTACGGTATGGTGCCTCACATTCCGTGT
CACCAGCCGTGAGTTCTTCTGGCTGAGCGGCAGTAGCAGCAGCAGTACCA
GTAGCGGGCTGCTGCGCTTGCAGGCCTGCTGCGCTTGCAGGCGTGACGTT
TATTTTTTTCCGTGCTCGGTGCGTTTGTGTGTTTCTGCTTCTTCTCAGAC
GAACAGGTGACGCTTGATCCCTTAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8518:701..1476+

>mRNA_Ecto-sp13_S_contig8518.19918.1 ID=mRNA_Ecto-sp13_S_contig8518.19918.1|Name=mRNA_Ecto-sp13_S_contig8518.19918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8518:701..1476+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGGCCACGGGGAGAGAGAGCCGAGGTCTACCTCCCCGTCCCGGAC
ACGGCGAAGGGGGGGGAGCGAGGGCGCCGCGGCCGCGGGGCTGAGCGGAG
AGAACCCGGAGCGGCGACGTGCCGGGGGATGGATACCTATTGACGCGCCG
GGGGAAGAGCGGCGAGGGAGTGACCATGGCGGCGGCGGACGGCGCCCGTC
GTCATCCGTGTCCCGGCGCGCTAGCTTAAGCAGAACCACGGGTGGTATCG
GGAGGGGCCACGGTGGCAGTAGTAGTCGGAGCACGCGGGGCGCCTCGAGC
AGGAATCGAAGCGGGAAGGACACGGATGCTCCGTCATGGCTTGGTCGAAA
ATAG
back to top