mRNA_Ecto-sp13_S_contig8516.19916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8516.19916.1
Unique NamemRNA_Ecto-sp13_S_contig8516.19916.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8516.19916.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.560e-33
Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 2 
Query:   68 MSGLEPLIPFAWGALRLTSSLLTAGFKKLIDVEDDSNGLIEWSGDVVRNAREKSRLTKQQGKGGGDDAMRVVEQHHQEVR 307
            MSGLEPLIPFAWGALRLTSSLLTAGFKKL+ VED+SNGLIEWSGDVV  AR+KS LTKQQG+G G  AMR  EQH  EVR
Sbjct:    1 MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWSGDVVLKARDKSLLTKQQGRGDGSAAMRASEQHGHEVR 80
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BLAST of mRNA_Ecto-sp13_S_contig8516.19916.1 vs. uniprot
Match: A0A6H5JUZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.500e-27
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 2 
Query:   68 MSGLEPLIPFAWGALRLTSSLLTAGFKKLIDVEDDSNGLIEWSGDVVRNAREKSRLTKQQGKGGGDDAMRVVEQHHQEV 304
            MSGLEP IP AWGALRLT+SL+TAGFKKL+ VED+S+ L+EWSGDVV  AR+ SR T+Q+G    D A R VEQH +E 
Sbjct:    1 MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVEDESDALVEWSGDVVLKARDTSRRTQQKG---SDAAARAVEQHREET 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8516.19916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3B9_9PHAE2.560e-3381.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ0_9PHAE3.500e-2765.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8516contigEcto-sp13_S_contig8516:4763..5206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.105501-UTR-Ecto-sp13_S_contig8516:4762..48291681464122.105501-UTR-Ecto-sp13_S_contig8516:4762..4829Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8516 4763..4829 +
1681464122.1256566-UTR-Ecto-sp13_S_contig8516:5102..52061681464122.1256566-UTR-Ecto-sp13_S_contig8516:5102..5206Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8516 5103..5206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.1160002-CDS-Ecto-sp13_S_contig8516:4829..51021681464122.1160002-CDS-Ecto-sp13_S_contig8516:4829..5102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8516 4830..5102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8516.19916.1prot_Ecto-sp13_S_contig8516.19916.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8516 4830..5102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8516.19916.1

>prot_Ecto-sp13_S_contig8516.19916.1 ID=prot_Ecto-sp13_S_contig8516.19916.1|Name=mRNA_Ecto-sp13_S_contig8516.19916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MSGLEPLIPFAWGALRLTSSLLTAGFKKLIDVEDDSNGLIEWSGDVVRNA
REKSRLTKQQGKGGGDDAMRVVEQHHQEVRVPGLTADMVG*
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mRNA from alignment at Ecto-sp13_S_contig8516:4763..5206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8516.19916.1 ID=mRNA_Ecto-sp13_S_contig8516.19916.1|Name=mRNA_Ecto-sp13_S_contig8516.19916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8516:4763..5206+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTATTACTCCGTACTGGCTACCGTGCGCGACTGCATCAGCTGGATCC
TTCTTACTTGTGGAACAATGTCAGGTTTGGAGCCTCTTATCCCTTTTGCT
TGGGGCGCTCTGAGGTTGACCTCGAGCCTTCTCACAGCTGGCTTCAAGAA
GCTTATCGATGTTGAGGACGACAGCAATGGGCTCATAGAGTGGTCGGGAG
ATGTCGTCCGAAATGCTCGGGAAAAATCGCGCCTGACGAAGCAGCAGGGA
AAGGGAGGCGGAGACGACGCGATGAGAGTTGTTGAACAGCATCACCAGGA
GGTGCGCGTTCCTGGTCTGACGGCTGACATGGTTGGGTAGAAATGGCGGA
CAAACATGTGTGGTGTGGGCGGCATATTGAAGCTGGCAACCCCTAGTGTG
GGTGTGCGCGACCGTGCGAAAATTGGCGATACAGATGGTAGGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8516:4763..5206+

>mRNA_Ecto-sp13_S_contig8516.19916.1 ID=mRNA_Ecto-sp13_S_contig8516.19916.1|Name=mRNA_Ecto-sp13_S_contig8516.19916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8516:4763..5206+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGGTTTGGAGCCTCTTATCCCTTTTGCTTGGGGCGCTCTGAGGTT
GACCTCGAGCCTTCTCACAGCTGGCTTCAAGAAGCTTATCGATGTTGAGG
ACGACAGCAATGGGCTCATAGAGTGGTCGGGAGATGTCGTCCGAAATGCT
CGGGAAAAATCGCGCCTGACGAAGCAGCAGGGAAAGGGAGGCGGAGACGA
CGCGATGAGAGTTGTTGAACAGCATCACCAGGAGGTGCGCGTTCCTGGTC
TGACGGCTGACATGGTTGGGTAG
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