mRNA_Ecto-sp13_S_contig8514.19913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8514.19913.1
Unique NamemRNA_Ecto-sp13_S_contig8514.19913.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: A0A6H5L7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 554 bits (1427), Expect = 6.870e-184
Identity = 430/641 (67.08%), Postives = 444/641 (69.27%), Query Frame = 1 
Query:   88 AAPAAGITLPLAAGVTLGGTGGSMGKSVVLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLALAKGEPVPSAPGQGNADGAPATGGSSNSDVGRAAGAVPGSSASQRPSSSDTASSTAASVGGTPCGIAVGGGTEGESAKPGAPGSHENGSAASVPLTAGTKRRRPQDESGGSNGNSADGDHAASTAAAPVDVSSAAGNLREKPGDKLEIAPSTVNDRRGKAEDGRQAAEGDEKGEGDPTAGSASGSRGRASAEGKVRAASQPEPEGTGAPSSAAEGGRADDEETRRANRLKRMRLIS----------------------------------------------------------------------------------------------------------------------RKDRPHSRDSTRSRGPRAEDGGGEGRERERRRGESHRKSRRDKEVGSRQEDXXXXXXXXXXXXXXXRPSGGGARTASGGPSXSDRDRSXXAGDGXXXXXXXXSXXXXXXXXXXRTSAASFRKRESSNSRRERNGRAGGGSRERIREKPRGDRETSGRRSSKDVRKEGERAERSXXXXXXXXXXXXXXXXXXXKRSRRK 1656
            AAPAAGI+LPLAAGVT GG GGS+G++ VLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRV+KRE SNPTFDFLNPANKFHAYYKRQLALAKGEPV  APGQGN  GAPATGGSSNSDVGRAAGAVPGSSASQRPSSS            TPCGIAVGGGTEGESAKPGAP S ENGSAAS  LTAGTKRRRPQDESGGS               APVD SSAAGNLREK GDKL +A STV D+RGKA DGRQAA+GD+KGEGDPT GSASGSRGR SAEGKV AASQPEPEG GAPSSAAEGGRADDEETRRANRLKRMRL+S                                                                                                                      RKDRPHSRDSTRSRGPRAEDGGGEGRERERRRGESHRKS RDKEVGSR+EDXXXXXXXXXXXXXX RPSGGG RTASGGPS SDRDRSXX    XXXXXXXX XXXXXXXXXX               RRER+GR GGGSRER+REKPRGDRETSGRRSSKDVRKEGERAERS    XXXXXXXXXXXXXX KRSRR+
Sbjct:  407 AAPAAGISLPLAAGVTFGGVGGSVGEAAVLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVKKREASNPTFDFLNPANKFHAYYKRQLALAKGEPVQPAPGQGNTGGAPATGGSSNSDVGRAAGAVPGSSASQRPSSSXXXXXXXXXXXXTPCGIAVGGGTEGESAKPGAPASQENGSAASGSLTAGTKRRRPQDESGGSXXXXXXXXXXXXXXXAPVDASSAAGNLREKQGDKLRMALSTVKDKRGKAGDGRQAADGDKKGEGDPTPGSASGSRGRLSAEGKVCAASQPEPEGVGAPSSAAEGGRADDEETRRANRLKRMRLMSGHYKLAVLEHSSEQQHESAXXXXXXXXXXXXXXXXXXXXXXXDGDCGGTDDHSSADGLSDLDYTSSSGDEDEGRGRDDEATGSSETAKPAARNSSSSGGTPDRCDRSSRAAGANGXXXRKDRPHSRDSTRSRGPRAEDGGGEGRERERRRGESHRKSGRDKEVGSRREDXXXXXXXXXXXXXXSRPSGGGERTASGGPSRSDRDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RRERDGRVGGGSRERVREKPRGDRETSGRRSSKDVRKEGERAERSSRRSXXXXXXXXXXXXXXNKRSRRR 1046
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: D7FJ62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ62_ECTSI)

HSP 1 Score: 537 bits (1384), Expect = 3.230e-179
Identity = 356/512 (69.53%), Postives = 367/512 (71.68%), Query Frame = 1 
Query:    1 VGAPNLLGGAYESSXXXXXXXXXXXXXTVAAPA-AGITLPLAAGVTLGGTGGSMGKSVVLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLALAKGEPVPSAPGQGNADGAPATGGSSNSDVGRAAGAVPGSSASQRPSSSDTASSTAASVGGTPCGIAVGGGTEGESAKPGAPGSHENGSAASVPLTAGTKRRRPQDES--GGSNGNSADGDHAASTAAAPVDVSSAAGNLREKPGDKLEIAPSTVNDRRGKAEDGRQAAEGDEKGEGDPTAGSASGSRGRASAEGKVRAASQPEPEGTGAPSSAAEGGRADDEETRRANRLKRMRLISRKDRPHSRDSTRSRGPRAEDGGGEGRERERRRGESHRKSRRDKEVGSRQEDXXXXXXXXXXXXXXXRPSGGGARTASGGPSXSDRDRSXXAGDGXXXXXXXXSXXXXXXXXXXRTSAASFRKRESSNSRRERNGRAGGGSRERIREKPRGDRETS 1527
            VGAPNLLGGAYESS               A  A  G TLPLAAGV+LG  GGS+G+ V+LSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLALAKGEPV  APGQGN  GAPATGGSSNSDV              RP    TA  TAASVGG  CGIAVGGGTEGESAKPGAP   ENGSAASV LTAG KRRRPQDES  GGSNGNSADGD A STAA PVD SSA GNLREK GDKL IA STVNDRRGKA+DGRQ  EGDEKGEGDPT GSASG RGR SAEGKVRAASQPEPEG GAPSSAAEGGRADDEETR           SRKDRPHSRDSTRSR PRAED GG GRERERR GESHRKSRRDK+V SR+ED            XXX        TASGGPS SDRDRS  AGDG        +          RT                 +GRAGG +RER+REKPRGDRETS
Sbjct:  356 VGAPNLLGGAYESSEDEEDNASTAAAVPPATAAPTGTTLPLAAGVSLGEAGGSVGEGVLLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLALAKGEPVSPAPGQGNTGGAPATGGSSNSDVRXXXXXXXXXXXXXRPXXXYTAXXTAASVGGASCGIAVGGGTEGESAKPGAPADQENGSAASVSLTAGKKRRRPQDESXXGGSNGNSADGDDATSTAAGPVDTSSAEGNLREKLGDKLGIALSTVNDRRGKADDGRQVVEGDEKGEGDPTPGSASGRRGRVSAEGKVRAASQPEPEGAGAPSSAAEGGRADDEETR----------SSRKDRPHSRDSTRSRVPRAEDSGGGGRERERRSGESHRKSRRDKDVASRREDRRDGRRGRSRSNXXXXXXXXXXXTASGGPSRSDRDRSSRAGDGTDWKRSDRNERGDRDKTSSRTXXXXXXXXXXXXXXXXXDGRAGGNNRERVREKPRGDRETS 857
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: Q5BRT7_SCHJA (SJCHGC07410 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5BRT7_SCHJA)

HSP 1 Score: 67.0 bits (162), Expect = 2.320e-10
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQL 351
            P  E R +V+K   +VA+NG  FE R+R+ E+SNP F+FLNPA+ +HAYY+ ++
Sbjct:   19 PPPEVRNIVDKTASFVARNGPDFESRIRQNEISNPKFNFLNPADPYHAYYQHKV 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: UPI000C758172 (splicing factor 3A subunit 1-like isoform X1 n=2 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C758172)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-8
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLA-LAKGEP 372
            P  E R +V+K  G+VA+NGQ FE R+++ EV+NP F+FLNP + +HAYY+ ++  + +G+P
Sbjct:   13 PPPEVRNIVDKTAGFVARNGQEFEHRIKQNEVNNPKFNFLNPGDPYHAYYQHKVVQIREGKP 74
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: A0A821SBD0_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821SBD0_9NEOB)

HSP 1 Score: 63.5 bits (153), Expect = 1.160e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQL 351
            P  E R +V+K   +VA+NG  FE R+R+ E++NP F+FLNP + +HAYY+ ++
Sbjct:   18 PPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKV 71
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: UPI001C4BC296 (splicing factor 3A subunit 1-like n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BC296)

HSP 1 Score: 63.5 bits (153), Expect = 1.440e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQL 351
            P  E R +V+K   +VA+NG  FE R+R+ E++NP F+FLNP + +HAYY+ ++
Sbjct:   42 PPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKV 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: A0A183W936_TRIRE (Uncharacterized protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183W936_TRIRE)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-8
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLA-LAKGE-PVPSA 384
            P  E R +V+K   +VA+NG  FE R+R+ E+SNP F+FLNPA+ +HAYY+ ++   A+G  P PSA
Sbjct:   23 PPPEVRNIVDKTASFVARNGPDFESRIRQNEISNPKFNFLNPADPYHAYYQHKVREFAEGRTPEPSA 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: A0A095A0P3_SCHHA (Splicing factor 3A subunit 1 n=1 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A095A0P3_SCHHA)

HSP 1 Score: 67.4 bits (163), Expect = 3.310e-8
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLA-LAKGE-PVPSA 384
            P  E R +V+K   +VA+NG  FE R+R+ E+SNP F+FLNPA+ +HAYY+ ++   A+G  P P+A
Sbjct:   22 PPPEVRNIVDKTASFVARNGPDFESRIRQNEISNPKFNFLNPADPYHAYYQHKVREFAEGRTPEPAA 88
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: A0A2D4PJB1_MICSU (SURP motif domain-containing protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4PJB1_MICSU)

HSP 1 Score: 63.5 bits (153), Expect = 3.630e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQL 351
            P  E R +V+K   +VA+NG  FE R+R+ E++NP F+FLNP + +HAYY+ ++
Sbjct:   34 PPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKV 87
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Match: A0A183PRB4_9TREM (Uncharacterized protein n=12 Tax=Schistosoma TaxID=6181 RepID=A0A183PRB4_9TREM)

HSP 1 Score: 67.4 bits (163), Expect = 4.330e-8
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  190 PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLA-LAKGE-PVPSA 384
            P  E R +V+K   +VA+NG  FE R+R+ E+SNP F+FLNPA+ +HAYY+ ++   A+G  P P+A
Sbjct:   22 PPPEVRNIVDKTASFVARNGPDFESRIRQNEISNPKFNFLNPADPYHAYYQHKVREFAEGRTPEPAA 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8514.19913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7V8_9PHAE6.870e-18467.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ62_ECTSI3.230e-17969.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
Q5BRT7_SCHJA2.320e-1050.00SJCHGC07410 protein (Fragment) n=1 Tax=Schistosoma... [more]
UPI000C7581721.150e-846.77splicing factor 3A subunit 1-like isoform X1 n=2 T... [more]
A0A821SBD0_9NEOB1.160e-846.30(mimic poison frog) hypothetical protein (Fragment... [more]
UPI001C4BC2961.440e-846.30splicing factor 3A subunit 1-like n=1 Tax=Scelopor... [more]
A0A183W936_TRIRE1.700e-849.25Uncharacterized protein n=1 Tax=Trichobilharzia re... [more]
A0A095A0P3_SCHHA3.310e-847.76Splicing factor 3A subunit 1 n=1 Tax=Schistosoma h... [more]
A0A2D4PJB1_MICSU3.630e-846.30SURP motif domain-containing protein (Fragment) n=... [more]
A0A183PRB4_9TREM4.330e-847.76Uncharacterized protein n=12 Tax=Schistosoma TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8514contigEcto-sp13_S_contig8514:439..3014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score556.2
Seed ortholog evalue1.7e-155
Seed eggNOG ortholog2880.D7FJ62
Preferred nameSFSWAP
Model size1659
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000395,GO:0000398,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0033119,GO:0034622,GO:0034641,GO:0043170,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0045292,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048519,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903311,GO:1903312
Exons3
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1847@1,KOG1847@2759
Ec32 ortholog descriptionSWAP/Surp
Ec32 orthologEc-10_000230.1
Cds size1659
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.956629-CDS-Ecto-sp13_S_contig8514:438..7161681464121.956629-CDS-Ecto-sp13_S_contig8514:438..716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8514 439..716 +
1681464121.9705927-CDS-Ecto-sp13_S_contig8514:1288..20681681464121.9705927-CDS-Ecto-sp13_S_contig8514:1288..2068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8514 1289..2068 +
1681464121.98205-CDS-Ecto-sp13_S_contig8514:2413..30141681464121.98205-CDS-Ecto-sp13_S_contig8514:2413..3014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8514 2414..3014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8514.19913.1prot_Ecto-sp13_S_contig8514.19913.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8514 439..3014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8514.19913.1

>prot_Ecto-sp13_S_contig8514.19913.1 ID=prot_Ecto-sp13_S_contig8514.19913.1|Name=mRNA_Ecto-sp13_S_contig8514.19913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=553bp
VGAPNLLGGAYESSDDEEENASTAAAATVAAPAAGITLPLAAGVTLGGTG
GSMGKSVVLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTF
DFLNPANKFHAYYKRQLALAKGEPVPSAPGQGNADGAPATGGSSNSDVGR
AAGAVPGSSASQRPSSSDTASSTAASVGGTPCGIAVGGGTEGESAKPGAP
GSHENGSAASVPLTAGTKRRRPQDESGGSNGNSADGDHAASTAAAPVDVS
SAAGNLREKPGDKLEIAPSTVNDRRGKAEDGRQAAEGDEKGEGDPTAGSA
SGSRGRASAEGKVRAASQPEPEGTGAPSSAAEGGRADDEETRRANRLKRM
RLISRKDRPHSRDSTRSRGPRAEDGGGEGRERERRRGESHRKSRRDKEVG
SRQEDRRDGRRGRSRSSSRSRPSGGGARTASGGPSRSDRDRSSRAGDGAD
RKRSDRSERGDRDKTSSRTSAASFRKRESSNSRRERNGRAGGGSRERIRE
KPRGDRETSGRRSSKDVRKEGERAERSSRRSRSRDRGESRERGGSNKRSR
RK*
back to top

mRNA from alignment at Ecto-sp13_S_contig8514:439..3014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8514.19913.1 ID=mRNA_Ecto-sp13_S_contig8514.19913.1|Name=mRNA_Ecto-sp13_S_contig8514.19913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8514:439..3014+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGCGCTCCCAATCTGCTGGGCGGCGCGTATGAATCCTCCGATGACGA
GGAGGAAAACGCCTCCACCGCCGCCGCCGCCACCGTCGCCGCTCCCGCCG
CAGGGATAACGTTGCCTCTGGCTGCGGGAGTGACCTTGGGGGGGACGGGG
GGTTCGATGGGGAAAAGCGTGGTGCTGTCCCCGGCGGTGCCAGGCGAAGA
AAAGCGACAGGTGGTGGAGAAGATGGTCGGCTATGTCGCCAAGAACGGCC
AGGCGTTCGAGGACCGTGTCAGGAAGAGGTGAGGGCTATGGGTGGACTCG
GCTGCGGGGCGAGAGGCGTTACGTTATAACCGTGTTGAGTGTAGTTTGGC
GTTGGTTCGACCAGGTGTGAGTGCTGTCTCATTATGTTTGCCAGCATGCG
GAACGCGTGGCCCGATGCCGTCGAGTTTTTACGATACCTTCGCGTCGTTC
GATATCATCAAGTTGTTGCGATGCCTTCACGACGAGCGACTGAGAAATCC
ACTCTTTCAATTCGAGCAGCAAAAGCGAAGTGTGAGTGGGTGATGACCTC
GAACACAACATGGCGTTTTTGCCAGCTGAGCGAGTGCCGCGAGTACTTGT
ACCTCATTTTTCGCGAAGTGAGCGTGCTACAGGATTCACATCACGGGAGG
CTCCAATCCCTGGACGTATGTCGCGATATCTCCTCGATTGTGTAGCCAGT
CAGCAAGGAGTACAATATCGGTCATGCGCCTCGTAGTTTTGAAACCACTC
CCTTGACCTGTTTCGTGCAGTAGCAGACTCCGACGCCCTCGTCTAAACCT
CCCCCCGCCCTCTGGACCACTCCCCGGCCTCCTGTGTCGCTACGAGCCAG
GGAAGTATCGAACCCTACGTTCGACTTCCTCAACCCGGCGAACAAGTTCC
ACGCCTACTACAAGAGGCAGCTAGCGCTGGCGAAAGGTGAGCCTGTTCCG
TCCGCCCCCGGGCAAGGCAACGCGGATGGCGCGCCGGCAACCGGAGGATC
GAGCAATTCCGACGTTGGGCGGGCAGCCGGCGCTGTGCCCGGCTCAAGCG
CTAGCCAACGCCCTTCCTCAAGTGACACAGCTTCGAGCACAGCTGCTTCC
GTGGGCGGTACGCCTTGCGGCATCGCGGTCGGTGGAGGTACAGAAGGAGA
ATCCGCCAAGCCCGGTGCACCGGGTTCTCACGAGAATGGCTCCGCTGCTT
CTGTCCCGTTGACCGCCGGGACGAAACGACGGCGACCGCAAGACGAAAGC
GGAGGGTCGAACGGCAACAGCGCGGATGGGGACCACGCTGCGTCAACCGC
TGCGGCGCCGGTCGACGTTTCCAGCGCCGCGGGGAATCTCCGGGAGAAGC
CAGGGGACAAGCTCGAGATAGCGCCATCCACGGTCAACGATAGACGGGGT
AAGGCAGAAGATGGTAGGCAGGCGGCGGAGGGAGACGAGAAGGGCGAAGG
TGACCCAACCGCTGGCTCCGCCAGCGGCAGCCGTGGACGTGCATCGGCGG
AGGGAAAAGTTCGCGCCGCGAGTCAGCCTGAACCAGAGGGTACGGGGGCA
CCGTCAAGTGCTGCGGAGGGGGGTCGTGCTGACGACGAAGAAACCAGGCG
AGCGAACCGCCTGAAGCGGATGCGGCTCATGTCGGGTCACTACAAGCTCG
CCGTCTTAGAGCACTCGTCGGAGCAGCAGCAGGAGAGTGCCGCTGCCGTC
GCGTCGACTGAACCGGCCCCGAGAGCGGTGTCGTCGGGTGGTGGCGGAGG
TGGTGGGGATGGCGGTGGAACTGACGACCACTCCTCGGCGGACGGCCTGT
CTGACCTGGACTACACCAGCAGCAGTACCGATGAGGAAGAAGGCCGTGGG
CGGGATGACGAAGTGGCAGGCAGCAGTGAGACGGCGAAGCCCGCCTCCCG
CAAGAGGTCATCTAGTGGCGGCACGCCAGACCGGGGTGGCCGTTCATCGC
GGGCCGCTGGTACCAACGGCAGAAGCAGCAGGAAAGACAGGCCGCATTCC
AGGGACAGCACGCGTAGCCGAGGACCGAGAGCCGAAGACGGTGGTGGCGA
AGGGAGGGAGAGGGAGCGCCGGCGCGGCGAGAGCCATCGCAAGAGCAGGA
GGGACAAAGAGGTGGGTTCTCGTCAAGAAGATCGAAGGGATGGACGACGG
GGCAGAAGCCGGAGCAGCAGTCGAAGCCGGCCCAGTGGTGGCGGTGCTCG
CACGGCCAGCGGCGGACCAAGCAGAAGCGACAGGGATCGGTCATCGCGGG
CCGGAGATGGTGCAGACCGGAAACGGAGTGACCGTAGCGAGAGAGGAGAC
CGAGACAAGACCAGCAGCAGGACCTCGGCTGCGTCTTTTCGAAAGCGGGA
GAGCAGTAACAGCAGGAGAGAACGGAACGGCAGAGCGGGGGGGGGCAGCA
GAGAGAGGATTCGCGAGAAGCCGAGGGGTGATCGTGAGACCAGCGGTAGG
AGGAGCTCGAAGGATGTTCGCAAGGAGGGTGAGCGTGCGGAGAGATCCAG
CAGGAGGAGCAGGAGCAGGGACCGCGGGGAGAGCCGGGAGCGAGGTGGTA
GCAACAAGCGATCGAGAAGGAAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8514:439..3014+

>mRNA_Ecto-sp13_S_contig8514.19913.1 ID=mRNA_Ecto-sp13_S_contig8514.19913.1|Name=mRNA_Ecto-sp13_S_contig8514.19913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1659bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8514:439..3014+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGCGCTCCCAATCTGCTGGGCGGCGCGTATGAATCCTCCGATGACGA
GGAGGAAAACGCCTCCACCGCCGCCGCCGCCACCGTCGCCGCTCCCGCCG
CAGGGATAACGTTGCCTCTGGCTGCGGGAGTGACCTTGGGGGGGACGGGG
GGTTCGATGGGGAAAAGCGTGGTGCTGTCCCCGGCGGTGCCAGGCGAAGA
AAAGCGACAGGTGGTGGAGAAGATGGTCGGCTATGTCGCCAAGAACGGCC
AGGCGTTCGAGGACCGTGTCAGGAAGAGGGAAGTATCGAACCCTACGTTC
GACTTCCTCAACCCGGCGAACAAGTTCCACGCCTACTACAAGAGGCAGCT
AGCGCTGGCGAAAGGTGAGCCTGTTCCGTCCGCCCCCGGGCAAGGCAACG
CGGATGGCGCGCCGGCAACCGGAGGATCGAGCAATTCCGACGTTGGGCGG
GCAGCCGGCGCTGTGCCCGGCTCAAGCGCTAGCCAACGCCCTTCCTCAAG
TGACACAGCTTCGAGCACAGCTGCTTCCGTGGGCGGTACGCCTTGCGGCA
TCGCGGTCGGTGGAGGTACAGAAGGAGAATCCGCCAAGCCCGGTGCACCG
GGTTCTCACGAGAATGGCTCCGCTGCTTCTGTCCCGTTGACCGCCGGGAC
GAAACGACGGCGACCGCAAGACGAAAGCGGAGGGTCGAACGGCAACAGCG
CGGATGGGGACCACGCTGCGTCAACCGCTGCGGCGCCGGTCGACGTTTCC
AGCGCCGCGGGGAATCTCCGGGAGAAGCCAGGGGACAAGCTCGAGATAGC
GCCATCCACGGTCAACGATAGACGGGGTAAGGCAGAAGATGGTAGGCAGG
CGGCGGAGGGAGACGAGAAGGGCGAAGGTGACCCAACCGCTGGCTCCGCC
AGCGGCAGCCGTGGACGTGCATCGGCGGAGGGAAAAGTTCGCGCCGCGAG
TCAGCCTGAACCAGAGGGTACGGGGGCACCGTCAAGTGCTGCGGAGGGGG
GTCGTGCTGACGACGAAGAAACCAGGCGAGCGAACCGCCTGAAGCGGATG
CGGCTCATCAGCAGGAAAGACAGGCCGCATTCCAGGGACAGCACGCGTAG
CCGAGGACCGAGAGCCGAAGACGGTGGTGGCGAAGGGAGGGAGAGGGAGC
GCCGGCGCGGCGAGAGCCATCGCAAGAGCAGGAGGGACAAAGAGGTGGGT
TCTCGTCAAGAAGATCGAAGGGATGGACGACGGGGCAGAAGCCGGAGCAG
CAGTCGAAGCCGGCCCAGTGGTGGCGGTGCTCGCACGGCCAGCGGCGGAC
CAAGCAGAAGCGACAGGGATCGGTCATCGCGGGCCGGAGATGGTGCAGAC
CGGAAACGGAGTGACCGTAGCGAGAGAGGAGACCGAGACAAGACCAGCAG
CAGGACCTCGGCTGCGTCTTTTCGAAAGCGGGAGAGCAGTAACAGCAGGA
GAGAACGGAACGGCAGAGCGGGGGGGGGCAGCAGAGAGAGGATTCGCGAG
AAGCCGAGGGGTGATCGTGAGACCAGCGGTAGGAGGAGCTCGAAGGATGT
TCGCAAGGAGGGTGAGCGTGCGGAGAGATCCAGCAGGAGGAGCAGGAGCA
GGGACCGCGGGGAGAGCCGGGAGCGAGGTGGTAGCAACAAGCGATCGAGA
AGGAAATAG
back to top