mRNA_Ecto-sp13_S_contig8506.19907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8506.19907.1
Unique NamemRNA_Ecto-sp13_S_contig8506.19907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.530e-18
Identity = 47/74 (63.51%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   13 PKNAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            P   ET   SNGLEGIDGNGVV   LEC  CGG  C TSG   GLGSESCCG GI  SG  C D+ EAPCI G+
Sbjct:  539 PTTVET--CSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGS 610          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.770e-17
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            ++G+EGIDGNGVV   LECG C G  C   G +FGLGSESCCG G+ D+G  C  + EAPCI G+
Sbjct:   49 NDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGS 113          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.040e-16
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   25 ETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            ET+  S+G EGIDGNGVV   + CG C G  CGT+G   GLGSESCCG G+   G+ C D+ EAPCI G+
Sbjct:  500 ETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGS 569          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.500e-16
Identity = 44/78 (56.41%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 PTPPPKNAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            PTP P +A T   SNGLEGIDGNGVV   L CG CGG  C TSG   GL   SCCG  I  SG  C ++ +APCI G+
Sbjct:  260 PTPSPTSANT--CSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGS 335          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.850e-16
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            +NG+EGIDGNGVV   L+CG CGG  C  SG +FGLGSESCCG G+  +   C  + +APCI G+
Sbjct:   96 NNGIEGIDGNGVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGS 160          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.610e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   19 NAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            +A     SNG++GIDGNG+V   +EC  CGG  C  +GR  GLG+ESCCG G+  SG  C D+ EAPCI G+
Sbjct:  521 SASVTTCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIGS 592          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.830e-14
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   28 TRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            T   SNGLEGIDGNGVV   L CG CGG  C TSG   GL  +SCCG GI  S   C ++ EAPCI G+
Sbjct:  445 TETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCIIGS 513          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.300e-13
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            S+G+EGIDGNGVV   L CG C G  C T+G   GL S SCCG  I DSG  C D+  APCI G+
Sbjct:    4 SDGIEGIDGNGVVCCPLGCGQCVGTGCSTAGAANGLSSGSCCGGEIKDSGNYCDDTGVAPCIYGS 68          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-13
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
            S+G+EGIDGNGVV   L CG C G  CG +G   GL S SCCG GI  SG  C D+  APCI G+
Sbjct:  650 SDGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGS 714          
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.870e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCI 225
            +NG+EGIDGNGVV   L CG C G  C   G E GLG++SCCG  I  SG +CS++  APCI
Sbjct:   26 TNGIEGIDGNGVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCI 87          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQV4_ECTSI4.530e-1863.51Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JGP9_9PHAE6.770e-1758.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI1.040e-1657.14Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
A0A6H5JC43_9PHAE3.500e-1656.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8L8_ECTSI4.850e-1656.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUJ9_ECTSI1.610e-1552.78Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
D7FIC5_ECTSI1.830e-1457.97Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K5M2_9PHAE3.300e-1356.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT7_9PHAE4.390e-1356.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRN1_ECTSI5.870e-1356.45Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8506contigEcto-sp13_S_contig8506:2240..2709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score91.7
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D7FQV4
Model size472
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.1390762-CDS-Ecto-sp13_S_contig8506:2239..24761681464121.1390762-CDS-Ecto-sp13_S_contig8506:2239..2476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8506 2240..2476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.1588433-UTR-Ecto-sp13_S_contig8506:2476..27091681464121.1588433-UTR-Ecto-sp13_S_contig8506:2476..2709Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8506 2477..2709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8506.19907.1prot_Ecto-sp13_S_contig8506.19907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8506 2240..2476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8506.19907.1

>prot_Ecto-sp13_S_contig8506.19907.1 ID=prot_Ecto-sp13_S_contig8506.19907.1|Name=mRNA_Ecto-sp13_S_contig8506.19907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
PTPPPKNAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLG
SESCCGEGIIDSGIMCSDSREAPCIQGA*
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mRNA from alignment at Ecto-sp13_S_contig8506:2240..2709+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8506.19907.1 ID=mRNA_Ecto-sp13_S_contig8506.19907.1|Name=mRNA_Ecto-sp13_S_contig8506.19907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8506:2240..2709+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACACCACCACCGAAAAACGCCGAGACACGCTTCAGCAGCAACGGCCT CGAGGGCATCGACGGTAACGGCGTGGTCTATCGCGCTCTCGAGTGCGGCG CGTGCGGAGGCTTAGACTGCGGCACGTCCGGCCGCGAGTTCGGCCTGGGC TCCGAGTCCTGCTGCGGCGAAGGGATCATAGACTCCGGGATCATGTGCTC CGACTCCCGGGAGGCCCCGTGCATCCAAGGTGCCTAGGCGGCACGTACCA CCCTGATGACAACGACCTCCACCCCCACCCCGAAGAAATAGTCGGCGATC CAACCACAGGCGGCCCTACGATGACCGTTCTGTTGAGGCATGCGCAAGGC CCGGACGCGGGGGCCGAAAGGCCTGCACGTCCTCTTGGTTACGGTGTAAG ATGCGACTAATGTAGAAAGGGTGATTTACCAGTCGCATGGCATTATTTTC TGCTCCTTTTTTCACGTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8506:2240..2709+

>mRNA_Ecto-sp13_S_contig8506.19907.1 ID=mRNA_Ecto-sp13_S_contig8506.19907.1|Name=mRNA_Ecto-sp13_S_contig8506.19907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8506:2240..2709+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACACCACCACCGAAAAACGCCGAGACACGCTTCAGCAGCAACGGCCT
CGAGGGCATCGACGGTAACGGCGTGGTCTATCGCGCTCTCGAGTGCGGCG
CGTGCGGAGGCTTAGACTGCGGCACGTCCGGCCGCGAGTTCGGCCTGGGC
TCCGAGTCCTGCTGCGGCGAAGGGATCATAGACTCCGGGATCATGTGCTC
CGACTCCCGGGAGGCCCCGTGCATCCAAGGTGCCTAG
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