mRNA_Ecto-sp13_S_contig8506.19907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 4.530e-18 Identity = 47/74 (63.51%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 13 PKNAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
P ET SNGLEGIDGNGVV LEC CGG C TSG GLGSESCCG GI SG C D+ EAPCI G+
Sbjct: 539 PTTVET--CSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGS 610
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 6.770e-17 Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
++G+EGIDGNGVV LECG C G C G +FGLGSESCCG G+ D+G C + EAPCI G+
Sbjct: 49 NDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGS 113
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.040e-16 Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 25 ETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
ET+ S+G EGIDGNGVV + CG C G CGT+G GLGSESCCG G+ G+ C D+ EAPCI G+
Sbjct: 500 ETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGS 569
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 3.500e-16 Identity = 44/78 (56.41%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 1 PTPPPKNAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
PTP P +A T SNGLEGIDGNGVV L CG CGG C TSG GL SCCG I SG C ++ +APCI G+
Sbjct: 260 PTPSPTSANT--CSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGS 335
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 4.850e-16 Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
+NG+EGIDGNGVV L+CG CGG C SG +FGLGSESCCG G+ + C + +APCI G+
Sbjct: 96 NNGIEGIDGNGVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGS 160
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 1.610e-15 Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 19 NAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
+A SNG++GIDGNG+V +EC CGG C +GR GLG+ESCCG G+ SG C D+ EAPCI G+
Sbjct: 521 SASVTTCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIGS 592
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.830e-14 Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 28 TRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
T SNGLEGIDGNGVV L CG CGG C TSG GL +SCCG GI S C ++ EAPCI G+
Sbjct: 445 TETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCIIGS 513
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.300e-13 Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
S+G+EGIDGNGVV L CG C G C T+G GL S SCCG I DSG C D+ APCI G+
Sbjct: 4 SDGIEGIDGNGVVCCPLGCGQCVGTGCSTAGAANGLSSGSCCGGEIKDSGNYCDDTGVAPCIYGS 68
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 4.390e-13 Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCIQGA 234
S+G+EGIDGNGVV L CG C G CG +G GL S SCCG GI SG C D+ APCI G+
Sbjct: 650 SDGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGS 714
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 5.870e-13 Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 40 SNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGSESCCGEGIIDSGIMCSDSREAPCI 225
+NG+EGIDGNGVV L CG C G C G E GLG++SCCG I SG +CS++ APCI
Sbjct: 26 TNGIEGIDGNGVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCI 87 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8506.19907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8506.19907.1 >prot_Ecto-sp13_S_contig8506.19907.1 ID=prot_Ecto-sp13_S_contig8506.19907.1|Name=mRNA_Ecto-sp13_S_contig8506.19907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp PTPPPKNAETRFSSNGLEGIDGNGVVYRALECGACGGLDCGTSGREFGLGback to top mRNA from alignment at Ecto-sp13_S_contig8506:2240..2709+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8506.19907.1 ID=mRNA_Ecto-sp13_S_contig8506.19907.1|Name=mRNA_Ecto-sp13_S_contig8506.19907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8506:2240..2709+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8506:2240..2709+ >mRNA_Ecto-sp13_S_contig8506.19907.1 ID=mRNA_Ecto-sp13_S_contig8506.19907.1|Name=mRNA_Ecto-sp13_S_contig8506.19907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8506:2240..2709+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |