mRNA_Ecto-sp13_S_contig8496.19888.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE) HSP 1 Score: 685 bits (1768), Expect = 3.220e-226 Identity = 512/613 (83.52%), Postives = 517/613 (84.34%), Query Frame = 1
Query: 295 CGESNGSPASIPSTAAAATKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------APALAATGACAPARPSLAIITTSTASALAAPALAVEVPPPGEDGARVGRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSFTKAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEARVGWGGWGSGGGEKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXX--------------------AALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVMERHCVAAQAGTNADPGGGLPPVTTAAAEVGGGPEKEGGPRNGAAWRDDGSDAMETSGDGGSGEDGAGEEATP 2049
CGESNGSPAS PS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AP LAATGAC P RPSLAI+TTSTASALAAPALAVE P GEDGA+ GRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASSF KAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEAR+GWGGWGSGG EKRYLAQAHTQE+LAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGH GVPK KEGACCSVNSVAVGALYAH QWSVGRVAVVDFGT LATGTADILCRTLDPAFLYATVAV DAATA GVG XXXXXXXXXXX A L AALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSV+ERHCVAAQA TNADPGG VGG EKEGGPRN AA RDDGSDAMETSGD GS EDGAGE ATP
Sbjct: 964 CGESNGSPASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPAPPLAATGACGPPRPSLAIVTTSTASALAAPALAVEFPSSGEDGAKGGRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSASSFPKAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEARMGWGGWGSGGDEKRYLAQAHTQEYLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHRCGVPKPKEGACCSVNSVAVGALYAHRQWSVGRVAVVDFGTQLATGTADILCRTLDPAFLYATVAVCDAATATTGVGAHEHALRLLGAGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVLYAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVVERHCVAAQADTNADPGGAPXXXXXXXXXVGGDSEKEGGPRNAAAGRDDGSDAMETSGDSGSCEDGAGEGATP 1576
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI) HSP 1 Score: 578 bits (1490), Expect = 1.340e-186 Identity = 492/589 (83.53%), Postives = 496/589 (84.21%), Query Frame = 1
Query: 25 RGASSREDEKPVGVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPAKXXXXXXXXXXXXXXXXXXXXCGESNGSPASIPSTAAAATKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPALAATGACAPARPSLAIITTSTASALAAPALAVEVPPPGEDGARVGRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASSFTKAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEARVGWGGWGSGGGEKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV 1785
RGASSREDEKPVGV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VP K XXXXX CGESNG PAS P ATK XXXX XXXXXXXXXXXXXXXXXXXXX AP LAATGACAP RPSLAI+TTSTASALAAPALAVEVP GEDGAR GRANSNPVGGGVRFIQRDLEAAQLMV+ARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASSF KAATAVRRSWSKELDAALQASPEDAGLVVESP+EAVPPGGGCGEEARVGWGGWGSGG EKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHG GVPKLKEGACC+VNSVAVGALYAHMQWSVGRVAVVDFGT LATGTADILCRTLDPAFLYATVAVS AALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV
Sbjct: 945 RGASSREDEKPVGVV------RGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPTKKAGASPATAAAKXXXXXTGGCGESNGFPASAPXXXXXATKXXXXXXGALATXXXXXXXXXXXXXXXXXXXXXPAPPLAATGACAPPRPSLAIMTTSTASALAAPALAVEVPSSGEDGARGGRANSNPVGGGVRFIQRDLEAAQLMVQARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSFPKAATAVRRSWSKELDAALQASPEDAGLVVESPREAVPPGGGCGEEARVGWGGWGSGGDEKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGCGVPKLKEGACCAVNSVAVGALYAHMQWSVGRVAVVDFGTHLATGTADILCRTLDPAFLYATVAVS---------------------------------------AALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV 1488
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE) HSP 1 Score: 122 bits (306), Expect = 7.810e-26 Identity = 82/224 (36.61%), Postives = 108/224 (48.21%), Query Frame = 1
Query: 1195 RQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAV--------SDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAA--LSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
++ W AA +A V+ V VL G NA C + PG HA + +G S C +N+VA+ ALYAH +V RVAVVDF GT D+LCRT P FLYA++ + A G G A + AAL+ F+P+L+++SAG D + DP G L A DFE T +V AERLC GR+VSV+E
Sbjct: 209 KRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSN-------GFCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVHPAGFHSATARVVAALDKFKPNLILVSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLE 425
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA) HSP 1 Score: 116 bits (290), Expect = 5.870e-23 Identity = 83/220 (37.73%), Postives = 111/220 (50.45%), Query Frame = 1
Query: 1195 RQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGH-GSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVS--DAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSA---ALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
R WGAA A++A V++ V AVLSG NALC + PG HA + S+G G+G C +N A+GA +A + + RVAV DF GT DIL RT DP F+Y ++ + D + + AL AL+AFRPDL+++S+G D K DP G L A D+ LT +V AER C GR+VSV+E
Sbjct: 1363 RDTWGAAIAASAAVIQAVDAVLSGEARNALCAVRPPGHHAGASINSLGAPGNGY--------CLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFMYLSLHATGEDVFPGSGRRARPDHPGVLNAPHRAEKVVTTEWVLEEALPRILNALDAFRPDLLILSSGFDAHKRDPVDLGRLDAADYGVLTRRLVDWAERKCCGRLVSVLE 1574
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A7H1J7X0_9GAMM (Histone deacetylase family protein n=1 Tax=Marinomonas arctica TaxID=383750 RepID=A0A7H1J7X0_9GAMM) HSP 1 Score: 101 bits (251), Expect = 8.030e-20 Identity = 72/209 (34.45%), Postives = 99/209 (47.37%), Query Frame = 1
Query: 1210 AASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
AA +A VV+ V V++G NA C + PG HA Y G C N++AVGA +A ++ + RVA++DF GT DI DP LYA+ + + G L ALEAF+P L+MISAG D K DP G+ L DF W+T ++++A+R CGG+VVSV+E
Sbjct: 93 AALFAAGSVVKAVDLVMTGEMDNAFCAIRPPGHHAE---YDKAMGF----------CLFNNIAVGARHAINRYGLARVAIIDFDVHHGNGTEDIFKA--DPTVLYAS-SYQHPFYPYSDPGASYDNILHMPLAAGSGSEAFQAIISEQLLPALEAFKPQLIMISAGFDAHKEDPMGQLRLSESDFTWITDRLMEVADRHCGGKVVSVLE 285
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A4Q5L1F4_9GAMM (Histone deacetylase family protein n=1 Tax=Methylococcaceae bacterium FWC3 TaxID=2516328 RepID=A0A4Q5L1F4_9GAMM) HSP 1 Score: 100 bits (250), Expect = 1.120e-19 Identity = 70/210 (33.33%), Postives = 97/210 (46.19%), Query Frame = 1
Query: 1210 AASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXA-ALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
AA +A V V AV SG+ NA C + PG HA SG + C N++A+ A +A + + +VAVVDF GT I + DP+ LYA+ G + A + AL+ FRPDL++ISAG D + DP DL+ EDFEW+T E+ ++AER GR+VS +E
Sbjct: 92 AALHAAGAVCAAVVAVTSGKARNAFCAVRPPGHHAESG-------------RPMGFCLFNNIAIAARHAQLACGLAKVAVVDFDVHHGNGTQQIFQK--DPSVLYASTHQYPWYPGTGGAEEIGVGNIVNVPLREGTDAKSFRNAVANRILPALDTFRPDLILISAGFDAHRDDPLASLDLIEEDFEWITNELKRIAERHARGRIVSALE 286
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: UPI001A909BF9 (histone deacetylase family protein n=1 Tax=Sneathiella sedimenti TaxID=2816034 RepID=UPI001A909BF9) HSP 1 Score: 100 bits (249), Expect = 1.490e-19 Identity = 82/256 (32.03%), Postives = 113/256 (44.14%), Query Frame = 1
Query: 1135 KRYLAQAHTQEFLAHMSA---------------MGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATV-------AVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
+ LA AHTQ L H++A M AA +A VV + AV+ ++A C + PG HA + ++G C N+VAVGA YA ++ + R+AVVDF GT I R DP YA+ DA+ GVG + ALEAFRP+LV+ISAG DG + DP G L D+ WLT +++ +A++ GRVVS +E
Sbjct: 52 REQLALAHTQAHLDHLTARAPVAGIIDLDPDTKMSPGSQTAALYAAGAVVAAIDAVMETPQSSAFCAIRPPGHHAEAN-RAMGF------------CLYNNVAVGAYYARKKYGLERIAVVDFDVHHGNGTQAIFER--DPGMFYASTHQAPFYPGTGDASET--GVGNIVNVPLAAGSGSRAFREAYD----TVILPALEAFRPELVIISAGFDGHEKDPIGNHKLTGADYSWLTKKLMVLADKHASGRVVSALE 286
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A5S4URN7_9GAMM (Histone deacetylase family protein n=1 Tax=Marinomonas sp. IMCC 4694 TaxID=2605432 RepID=A0A5S4URN7_9GAMM) HSP 1 Score: 99.4 bits (246), Expect = 3.620e-19 Identity = 73/209 (34.93%), Postives = 98/209 (46.89%), Query Frame = 1
Query: 1210 AASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
AA +A VV+ V V+SG NA C + PG HA Y G C N++AVGA +A Q+ + RVA++DF GT DI D +YA+ + + G L ALEAF+PDLVM+SAG D K DP G+ L DF W+T ++ +A+R CGG+VVSV+E
Sbjct: 93 AALYAAGSVVQAVDVVMSGEMDNAFCAIRPPGHHAE---YDKAMGF----------CLFNNIAVGARHAVRQYGLQRVAIIDFDVHHGNGTEDIFKS--DANVMYAS-SYQHPFYPYSDPGASHDNILHMPLAAGSGSEAFQAIITEQLLPALEAFKPDLVMLSAGFDAHKEDPMGQLRLSESDFTWITDVLMDVADRHCGGKVVSVLE 285
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A6G0WVK2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVK2_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.830e-19 Identity = 72/225 (32.00%), Postives = 101/225 (44.89%), Query Frame = 1
Query: 1204 WGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSD----AATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGR----------GDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
W A +A V V VL+G NA+CL+ PG H VG P C +N+V +GAL+A M SV R+AV+D+ GT ++L DP +A++ + D T A G + A+E+F+PD++ ISAG DG K D G V D+ W T EV+K+A++ C GRVVSV+E
Sbjct: 1015 WDVARIAAGTVCLAVDKVLNGEFKNAVCLVRPPGHH-------VGRNGRTPNAPSSGFCLLNNVVIGALHARMHPSVSRIAVLDWDIHHGNGTEELLRG--DPRSFFASIHLYDNNFFPGTGATGADANVVNVGLANSGMGSGSEAFRHALTTNIFPAMESFKPDIIFISAGFDGHKDDIIGGCAAVGNRNIPAGYVEADYAWATKEVLKLADKYCDGRVVSVLE 1230
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: UPI002003B713 (histone deacetylase family protein n=1 Tax=Lysobacter sp. CAU 1642 TaxID=2933270 RepID=UPI002003B713) HSP 1 Score: 99.4 bits (246), Expect = 4.150e-19 Identity = 74/218 (33.94%), Postives = 98/218 (44.95%), Query Frame = 1
Query: 1183 SAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
+AM AA +A VV G+ AV++GR A C + PG HA G ++G C NSVAVGA +A + RVAVVDF GT DIL T ++ + A T A + L+AFRP L+++SAG D + DP DL D+ WLTLE+V +AER GR+VS +E
Sbjct: 91 TAMSESSAEAALRAAGAVVAGIDAVMAGRARRAFCAVRPPGHHATRG-EAMGF------------CLFNSVAVGARHALQHHGLQRVAVVDFDVHHGNGTQDILWDTPGSLYISSHQAPLYPGTGARSETGGAGRCLNLPLSAGCPSAEFRDAWRREVLPQLDAFRPQLILVSAGFDAHRLDPLASVDLDTGDYAWLTLELVDIAERHAHGRLVSALE 295 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8496.19888.1 >prot_Ecto-sp13_S_contig8496.19888.1 ID=prot_Ecto-sp13_S_contig8496.19888.1|Name=mRNA_Ecto-sp13_S_contig8496.19888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=683bp GSGVGGSGRGASSREDEKPVGVAGGAAAAGSSDSEKETTKELLSSKTASDback to top mRNA from alignment at Ecto-sp13_S_contig8496:910..4907- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8496.19888.1 ID=mRNA_Ecto-sp13_S_contig8496.19888.1|Name=mRNA_Ecto-sp13_S_contig8496.19888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8496:910..4907- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8496:910..4907- >mRNA_Ecto-sp13_S_contig8496.19888.1 ID=mRNA_Ecto-sp13_S_contig8496.19888.1|Name=mRNA_Ecto-sp13_S_contig8496.19888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2049bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8496:910..4907- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |