mRNA_Ecto-sp13_S_contig8496.19888.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8496.19888.1
Unique NamemRNA_Ecto-sp13_S_contig8496.19888.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 685 bits (1768), Expect = 3.220e-226
Identity = 512/613 (83.52%), Postives = 517/613 (84.34%), Query Frame = 1
Query:  295 CGESNGSPASIPSTAAAATKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------APALAATGACAPARPSLAIITTSTASALAAPALAVEVPPPGEDGARVGRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSFTKAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEARVGWGGWGSGGGEKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXX--------------------AALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVMERHCVAAQAGTNADPGGGLPPVTTAAAEVGGGPEKEGGPRNGAAWRDDGSDAMETSGDGGSGEDGAGEEATP 2049
            CGESNGSPAS PS         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        AP LAATGAC P RPSLAI+TTSTASALAAPALAVE P  GEDGA+ GRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLR    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASSF KAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEAR+GWGGWGSGG EKRYLAQAHTQE+LAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGH  GVPK KEGACCSVNSVAVGALYAH QWSVGRVAVVDFGT LATGTADILCRTLDPAFLYATVAV DAATA  GVG              XXXXXXXXXXX                    A L AALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSV+ERHCVAAQA TNADPGG           VGG  EKEGGPRN AA RDDGSDAMETSGD GS EDGAGE ATP
Sbjct:  964 CGESNGSPASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPAPPLAATGACGPPRPSLAIVTTSTASALAAPALAVEFPSSGEDGAKGGRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSASSFPKAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEARMGWGGWGSGGDEKRYLAQAHTQEYLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHRCGVPKPKEGACCSVNSVAVGALYAHRQWSVGRVAVVDFGTQLATGTADILCRTLDPAFLYATVAVCDAATATTGVGAHEHALRLLGAGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVLYAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVVERHCVAAQADTNADPGGAPXXXXXXXXXVGGDSEKEGGPRNAAAGRDDGSDAMETSGDSGSCEDGAGEGATP 1576          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 578 bits (1490), Expect = 1.340e-186
Identity = 492/589 (83.53%), Postives = 496/589 (84.21%), Query Frame = 1
Query:   25 RGASSREDEKPVGVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPAKXXXXXXXXXXXXXXXXXXXXCGESNGSPASIPSTAAAATKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPALAATGACAPARPSLAIITTSTASALAAPALAVEVPPPGEDGARVGRANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASSFTKAATAVRRSWSKELDAALQASPEDAGLVVESPQEAVPPGGGCGEEARVGWGGWGSGGGEKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV 1785
            RGASSREDEKPVGV           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VP K            XXXXX   CGESNG PAS P     ATK  XXXX     XXXXXXXXXXXXXXXXXXXXX AP LAATGACAP RPSLAI+TTSTASALAAPALAVEVP  GEDGAR GRANSNPVGGGVRFIQRDLEAAQLMV+ARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASSF KAATAVRRSWSKELDAALQASPEDAGLVVESP+EAVPPGGGCGEEARVGWGGWGSGG EKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHG GVPKLKEGACC+VNSVAVGALYAHMQWSVGRVAVVDFGT LATGTADILCRTLDPAFLYATVAVS                                       AALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV
Sbjct:  945 RGASSREDEKPVGVV------RGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPTKKAGASPATAAAKXXXXXTGGCGESNGFPASAPXXXXXATKXXXXXXGALATXXXXXXXXXXXXXXXXXXXXXPAPPLAATGACAPPRPSLAIMTTSTASALAAPALAVEVPSSGEDGARGGRANSNPVGGGVRFIQRDLEAAQLMVQARKLDLAAREWVGLRCLLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSFPKAATAVRRSWSKELDAALQASPEDAGLVVESPREAVPPGGGCGEEARVGWGGWGSGGDEKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGCGVPKLKEGACCAVNSVAVGALYAHMQWSVGRVAVVDFGTHLATGTADILCRTLDPAFLYATVAVS---------------------------------------AALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV 1488          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.810e-26
Identity = 82/224 (36.61%), Postives = 108/224 (48.21%), Query Frame = 1
Query: 1195 RQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAV--------SDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAA--LSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            ++ W AA  +A  V+  V  VL G   NA C +  PG HA    + +G  S          C +N+VA+ ALYAH   +V RVAVVDF      GT D+LCRT  P FLYA++          +  A    G G                         A   + AAL+ F+P+L+++SAG D  + DP   G L A DFE  T  +V  AERLC GR+VSV+E
Sbjct:  209 KRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSN-------GFCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVHPAGFHSATARVVAALDKFKPNLILVSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLE 425          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.870e-23
Identity = 83/220 (37.73%), Postives = 111/220 (50.45%), Query Frame = 1
Query: 1195 RQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGH-GSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVS--DAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSA---ALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            R  WGAA A++A V++ V AVLSG   NALC +  PG HA +   S+G  G+G         C +N  A+GA +A  +  + RVAV DF      GT DIL RT DP F+Y ++  +  D    +    +                         AL     AL+AFRPDL+++S+G D  K DP   G L A D+  LT  +V  AER C GR+VSV+E
Sbjct: 1363 RDTWGAAIAASAAVIQAVDAVLSGEARNALCAVRPPGHHAGASINSLGAPGNGY--------CLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFMYLSLHATGEDVFPGSGRRARPDHPGVLNAPHRAEKVVTTEWVLEEALPRILNALDAFRPDLLILSSGFDAHKRDPVDLGRLDAADYGVLTRRLVDWAERKCCGRLVSVLE 1574          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A7H1J7X0_9GAMM (Histone deacetylase family protein n=1 Tax=Marinomonas arctica TaxID=383750 RepID=A0A7H1J7X0_9GAMM)

HSP 1 Score: 101 bits (251), Expect = 8.030e-20
Identity = 72/209 (34.45%), Postives = 99/209 (47.37%), Query Frame = 1
Query: 1210 AASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            AA  +A  VV+ V  V++G   NA C +  PG HA    Y    G           C  N++AVGA +A  ++ + RVA++DF      GT DI     DP  LYA+ +        +  G                           L  ALEAF+P L+MISAG D  K DP G+  L   DF W+T  ++++A+R CGG+VVSV+E
Sbjct:   93 AALFAAGSVVKAVDLVMTGEMDNAFCAIRPPGHHAE---YDKAMGF----------CLFNNIAVGARHAINRYGLARVAIIDFDVHHGNGTEDIFKA--DPTVLYAS-SYQHPFYPYSDPGASYDNILHMPLAAGSGSEAFQAIISEQLLPALEAFKPQLIMISAGFDAHKEDPMGQLRLSESDFTWITDRLMEVADRHCGGKVVSVLE 285          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A4Q5L1F4_9GAMM (Histone deacetylase family protein n=1 Tax=Methylococcaceae bacterium FWC3 TaxID=2516328 RepID=A0A4Q5L1F4_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 1.120e-19
Identity = 70/210 (33.33%), Postives = 97/210 (46.19%), Query Frame = 1
Query: 1210 AASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXA-ALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            AA  +A  V   V AV SG+  NA C +  PG HA SG             +    C  N++A+ A +A +   + +VAVVDF      GT  I  +  DP+ LYA+           G  +                        A  +  AL+ FRPDL++ISAG D  + DP    DL+ EDFEW+T E+ ++AER   GR+VS +E
Sbjct:   92 AALHAAGAVCAAVVAVTSGKARNAFCAVRPPGHHAESG-------------RPMGFCLFNNIAIAARHAQLACGLAKVAVVDFDVHHGNGTQQIFQK--DPSVLYASTHQYPWYPGTGGAEEIGVGNIVNVPLREGTDAKSFRNAVANRILPALDTFRPDLILISAGFDAHRDDPLASLDLIEEDFEWITNELKRIAERHARGRIVSALE 286          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: UPI001A909BF9 (histone deacetylase family protein n=1 Tax=Sneathiella sedimenti TaxID=2816034 RepID=UPI001A909BF9)

HSP 1 Score: 100 bits (249), Expect = 1.490e-19
Identity = 82/256 (32.03%), Postives = 113/256 (44.14%), Query Frame = 1
Query: 1135 KRYLAQAHTQEFLAHMSA---------------MGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATV-------AVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            +  LA AHTQ  L H++A               M      AA  +A  VV  + AV+    ++A C +  PG HA +   ++G             C  N+VAVGA YA  ++ + R+AVVDF      GT  I  R  DP   YA+           DA+    GVG                           +  ALEAFRP+LV+ISAG DG + DP G   L   D+ WLT +++ +A++   GRVVS +E
Sbjct:   52 REQLALAHTQAHLDHLTARAPVAGIIDLDPDTKMSPGSQTAALYAAGAVVAAIDAVMETPQSSAFCAIRPPGHHAEAN-RAMGF------------CLYNNVAVGAYYARKKYGLERIAVVDFDVHHGNGTQAIFER--DPGMFYASTHQAPFYPGTGDASET--GVGNIVNVPLAAGSGSRAFREAYD----TVILPALEAFRPELVIISAGFDGHEKDPIGNHKLTGADYSWLTKKLMVLADKHASGRVVSALE 286          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A5S4URN7_9GAMM (Histone deacetylase family protein n=1 Tax=Marinomonas sp. IMCC 4694 TaxID=2605432 RepID=A0A5S4URN7_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 3.620e-19
Identity = 73/209 (34.93%), Postives = 98/209 (46.89%), Query Frame = 1
Query: 1210 AASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            AA  +A  VV+ V  V+SG   NA C +  PG HA    Y    G           C  N++AVGA +A  Q+ + RVA++DF      GT DI     D   +YA+ +        +  G                           L  ALEAF+PDLVM+SAG D  K DP G+  L   DF W+T  ++ +A+R CGG+VVSV+E
Sbjct:   93 AALYAAGSVVQAVDVVMSGEMDNAFCAIRPPGHHAE---YDKAMGF----------CLFNNIAVGARHAVRQYGLQRVAIIDFDVHHGNGTEDIFKS--DANVMYAS-SYQHPFYPYSDPGASHDNILHMPLAAGSGSEAFQAIITEQLLPALEAFKPDLVMLSAGFDAHKEDPMGQLRLSESDFTWITDVLMDVADRHCGGKVVSVLE 285          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: A0A6G0WVK2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVK2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.830e-19
Identity = 72/225 (32.00%), Postives = 101/225 (44.89%), Query Frame = 1
Query: 1204 WGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSD----AATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGR----------GDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            W  A  +A  V   V  VL+G   NA+CL+  PG H       VG     P       C +N+V +GAL+A M  SV R+AV+D+      GT ++L    DP   +A++ + D      T A G                             +  A+E+F+PD++ ISAG DG K D  G              V  D+ W T EV+K+A++ C GRVVSV+E
Sbjct: 1015 WDVARIAAGTVCLAVDKVLNGEFKNAVCLVRPPGHH-------VGRNGRTPNAPSSGFCLLNNVVIGALHARMHPSVSRIAVLDWDIHHGNGTEELLRG--DPRSFFASIHLYDNNFFPGTGATGADANVVNVGLANSGMGSGSEAFRHALTTNIFPAMESFKPDIIFISAGFDGHKDDIIGGCAAVGNRNIPAGYVEADYAWATKEVLKLADKYCDGRVVSVLE 1230          
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Match: UPI002003B713 (histone deacetylase family protein n=1 Tax=Lysobacter sp. CAU 1642 TaxID=2933270 RepID=UPI002003B713)

HSP 1 Score: 99.4 bits (246), Expect = 4.150e-19
Identity = 74/218 (33.94%), Postives = 98/218 (44.95%), Query Frame = 1
Query: 1183 SAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSGVPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCRTLDPAFLYATVAVSDAATAAAGVGQXXXXXXXXXXXXXXXXXXXXXXXXAALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVME 1836
            +AM      AA  +A  VV G+ AV++GR   A C +  PG HA  G  ++G             C  NSVAVGA +A     + RVAVVDF      GT DIL  T    ++ +  A     T A                               +   L+AFRP L+++SAG D  + DP    DL   D+ WLTLE+V +AER   GR+VS +E
Sbjct:   91 TAMSESSAEAALRAAGAVVAGIDAVMAGRARRAFCAVRPPGHHATRG-EAMGF------------CLFNSVAVGARHALQHHGLQRVAVVDFDVHHGNGTQDILWDTPGSLYISSHQAPLYPGTGARSETGGAGRCLNLPLSAGCPSAEFRDAWRREVLPQLDAFRPQLILVSAGFDAHRLDPLASVDLDTGDYAWLTLELVDIAERHAHGRLVSALE 295          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8496.19888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK20_9PHAE3.220e-22683.52Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LN85_ECTSI1.340e-18683.53Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
A0A6H5L3L8_9PHAE7.810e-2636.61Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A8J2SBW9_9STRA5.870e-2337.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7H1J7X0_9GAMM8.030e-2034.45Histone deacetylase family protein n=1 Tax=Marinom... [more]
A0A4Q5L1F4_9GAMM1.120e-1933.33Histone deacetylase family protein n=1 Tax=Methylo... [more]
UPI001A909BF91.490e-1932.03histone deacetylase family protein n=1 Tax=Sneathi... [more]
A0A5S4URN7_9GAMM3.620e-1934.93Histone deacetylase family protein n=1 Tax=Marinom... [more]
A0A6G0WVK2_9STRA3.830e-1932.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI002003B7134.150e-1933.94histone deacetylase family protein n=1 Tax=Lysobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8496contigEcto-sp13_S_contig8496:910..4907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score107.5
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog44056.XP_009035751.1
Model size2050
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759,KOG4475@1,KOG4475@2759
Ec32 ortholog descriptionHistone deacetylase with CXXC-type zinc finger domain
Ec32 orthologEc-05_003910.1
Cds size2049
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8496.19888.1prot_Ecto-sp13_S_contig8496.19888.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8496 910..4907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464119.342383-CDS-Ecto-sp13_S_contig8496:909..11761681464119.342383-CDS-Ecto-sp13_S_contig8496:909..1176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8496 910..1176 -
1681464119.352763-CDS-Ecto-sp13_S_contig8496:1523..17331681464119.352763-CDS-Ecto-sp13_S_contig8496:1523..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8496 1524..1733 -
1681464119.3610702-CDS-Ecto-sp13_S_contig8496:1811..18401681464119.3610702-CDS-Ecto-sp13_S_contig8496:1811..1840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8496 1812..1840 -
1681464119.3693202-CDS-Ecto-sp13_S_contig8496:2317..24331681464119.3693202-CDS-Ecto-sp13_S_contig8496:2317..2433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8496 2318..2433 -
1681464119.3781672-CDS-Ecto-sp13_S_contig8496:2967..32571681464119.3781672-CDS-Ecto-sp13_S_contig8496:2967..3257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8496 2968..3257 -
1681464119.3873518-CDS-Ecto-sp13_S_contig8496:3770..49071681464119.3873518-CDS-Ecto-sp13_S_contig8496:3770..4907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8496 3771..4907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8496.19888.1

>prot_Ecto-sp13_S_contig8496.19888.1 ID=prot_Ecto-sp13_S_contig8496.19888.1|Name=mRNA_Ecto-sp13_S_contig8496.19888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=683bp
GSGVGGSGRGASSREDEKPVGVAGGAAAAGSSDSEKETTKELLSSKTASD
NGKEGSRSPAAAAAAAAAATSGGGVPAKEGGASPATAAAKPSATANGGCG
ESNGSPASIPSTAAAATKASTAAGGAPTTAAATGKGGAGSEEGGATAAGA
SAPALAATGACAPARPSLAIITTSTASALAAPALAVEVPPPGEDGARVGR
ANSNPVGGGVRFIQRDLEAAQLMVRARKLDLAAREWVGLRCLLLRRATAA
AAAAAPVPPSLRGGSTLVLRPAAAPCEASNDGGGADSTAAGDDESNNNKA
GKPKSTAKSNNNHSASSFTKAATAVRRSWSKELDAALQASPEDAGLVVES
PQEAVPPGGGCGEEARVGWGGWGSGGGEKRYLAQAHTQEFLAHMSAMGRQ
EWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHAPSGGYSVGHGSG
VPKLKEGACCSVNSVAVGALYAHMQWSVGRVAVVDFGTDLATGTADILCR
TLDPAFLYATVAVSDAATAAAGVGQQQQRLTRAALGGSSGGGGGGGGAVA
ALSAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAE
RLCGGRVVSVMERHCVAAQAGTNADPGGGLPPVTTAAAEVGGGPEKEGGP
RNGAAWRDDGSDAMETSGDGGSGEDGAGEEATP
back to top

mRNA from alignment at Ecto-sp13_S_contig8496:910..4907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8496.19888.1 ID=mRNA_Ecto-sp13_S_contig8496.19888.1|Name=mRNA_Ecto-sp13_S_contig8496.19888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8496:910..4907- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGCGGCGTCGGCGGCAGCGGGCGAGGCGCGTCATCCCGGGAGGACGA GAAGCCTGTGGGGGTTGCGGGGGGGGCTGCGGCGGCGGGTAGTAGTGATT CCGAGAAGGAGACGACTAAGGAGTTGTTGTCGTCCAAGACCGCCTCTGAC AACGGCAAAGAGGGCTCTAGGTCGCCCGCAGCGGCAGCGGCGGCGGCGGC GGCGGCGACTTCTGGCGGTGGCGTGCCCGCGAAGGAGGGCGGCGCTTCCC CTGCGACTGCCGCTGCTAAGCCCTCCGCAACCGCAAACGGGGGCTGCGGG GAGAGCAACGGTTCCCCCGCTTCTATACCTTCCACCGCTGCGGCCGCTAC TAAGGCGTCGACTGCCGCCGGTGGTGCGCCAACCACCGCGGCGGCGACGG GGAAAGGCGGCGCTGGTTCCGAAGAAGGCGGAGCGACGGCGGCGGGAGCT TCGGCACCGGCGCTGGCGGCAACCGGAGCATGTGCTCCTGCGCGTCCCTC CTTGGCCATAATCACCACGTCCACGGCCTCCGCTCTCGCGGCACCGGCGC TGGCAGTAGAAGTCCCTCCCCCCGGGGAGGACGGTGCAAGAGTGGGGCGC GCAAACAGCAACCCGGTCGGAGGGGGGGTACGGTTCATCCAGAGGGACCT GGAAGCGGCCCAGCTGATGGTCCGGGCTCGGAAGCTCGACCTGGCCGCCA GGGAGTGGGTCGGTCTGCGGTGCCTCCTCTTGAGGCGTGCCACCGCTGCC GCCGCCGCCGCCGCTCCCGTCCCTCCGTCCCTTCGAGGTGGTTCGACCCT GGTTCTTAGGCCGGCCGCCGCCCCCTGTGAAGCATCCAATGACGGTGGTG GTGCCGACAGCACCGCCGCCGGTGATGACGAGAGCAACAACAACAAGGCC GGCAAGCCGAAGAGTACCGCCAAGAGCAACAACAACCATAGCGCCTCCTC CTTCACCAAGGCGGCTACGGCGGTCAGGCGTTCGTGGTCGAAGGAGCTAG ACGCGGCCCTGCAGGCGTCGCCGGAAGATGCCGGTCTGGTGGTGGAGAGC CCCCAGGAGGCCGTACCCCCTGGCGGCGGGTGTGGTGAGGAGGCCAGGGT GGGCTGGGGTGGCTGGGGGTCCGGCGGTGGCGAAAAGGTAGGCCTGGCCT GGGGCTCGTCTGTTTTTATCTTGTATTTGCGGGGTGGAGGGGGGTGGAGG GATTCACGTGGCTCGGTGTTTTGACCACGAAAGTCGATTCTTCGGCCGTT CACCCGGGCGCCCGCTTGCGTTCTTGCGTTCGAGATCACCTCTTTGTGCT CGTTTTTGTTCTCCCTCCCTCCCTCTTCTCTCTTTCCCTCTCTCTCTCCC CCCTCGCCCTCTCTCTTTGTGCGCTATCCTCTCGAGGACCCATGGCCTAC CTGCTAAGGCATGCAAGACATGAGTATCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCGCCCCCGCCACTCCACCCAACGACCAAAAACAAAAGAAA GAACCCGCACGCAAACCAAACGAGATGCCAACCNNNNNNNNNNAAAACAT GAGTACCCCCCCCCCCCCCCCGCGTCAATGGTCGAACCGCTAAGGCATGC AAAAGAGTACCCCCTCCCCCGCCCCCCTTCTCTCTCTCTGTTCCCCTCAG CGGTACCTCGCCCAAGCACACACACAGGAGTTCCTCGCGCACATGTCCGC CATGGGCCGACAGGAGTGGGGCGCCGCTTCCGCCTCGGCGGCGTGCGTCG TGAGAGGCGTGTCTGCCGTTCTCTCCGGCAGGTGCACGAACGCTCTCTGC CTCCTGGAAAATCCGGGGAGGCATGCTCCCAGCGGGGGTTACTCAGTTGG GCACGGGAGTGGGGTCCCGAAGCTGAAAGAGGGGGCGTGCTGCTCTGTGA ACAGCGTCGCCGTGGGTGCACTCTACGCACACATGCAGTGGTGGGTGGGA GGGGTGGGGGGGGGTTGGGGGTTGCTGGTAGACACCGGTTCACGCGTCCC GGGGCGGGGCGTTTGGCTTTGAGGTTGTTCCCTGTAGTTTGCGGTTTGTG TGGGACGCCACCCAGAGGAGCGATCGGCCCGCGTGCGTGCCACGTGCTTG TAGGCAATGCCTTTCCCTTTGTTTTTCCTTACCTTGTGATGGGGAGAGGG AGGGAGGAAGGGAGGGAGGGAGAGAGAGATAGAGAGGCGAGTTGCCGTCG TGAGTGGCGTTTTTTGTTTTGCTGCAGGGTTAATTCATGTATCCTCAGTT TATTTTTTTCATCATACATATTCCTCACCCTGATTGATCGCGCGTTCTCC TCTGTCTCTGTTTACTGTCTCTTGTCGAGCCACGGTTCCAATGGATCCTG CCGGTTTTATTTATCTCTCTGTTTTTCATGCGTGATATGTTTACGGTGAT CTCTCTTGTATATTCCCCTCGTGCTGGGCGTACGCGTGCGGTCTGTTGTT CCGCGTGTTTTTCGCTGTCGGTAGGTCCGTGGGGCGCGTGGCCGTGGTGG ACTTCGGCACTGACCTCGCGACCGGCACCGCGGACATCCTTTGCCGCACG CTGGACCCAGCCTTCCTCTACGCTACCGTTGCCGTGTCCGGTACGATGAA CATTAACATTATCTTGTTTCGTCACAGCAGTTTGGTTCTCATTTACACAG CGATGAGTCACTTGACTTGCACGGTACGAAGAGTGTTGCTTGTTGATTCA CAGCAGTTTGTTCCTCATTTACACAGCGATTTACCTAGTGTCTTGGTTTC TGACGTACGGTAGTCCACGTGTTTCGTCCCCCCTCCTTCCATGTCTATCC CCTTTTCCGCGCATCGTCACTGCATCGTTTATTCTCCGTTTGCGTGTGCG CAACCACTTTGAGAGGAGAGCTCTTCCGGTGTGCAATGCAGCATAGGGCC ACTCTCGCTCGGTGTCGTCTTGCACTCGACACGCACCCGCCGCCGTACAG ACCGGGTCTGTTTTGACTGTTGTTGGTCGTGGGTTGGTGGGTGGGTGGTG GTTGTTACTCTGACCGTCGTTGTCCCTCGTCCCTTACCCTTCCGCCTCCC TTTCTCCATCCCATCAGACGCCGCAACTGCCGCCGCAGGGGTGGGGGCAC ACGAGCACGCCCTCCGCCTGCTTGGCACAGGCGCAAGCAGCAGCAGCGAA CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCACCCGGGC GGCGCTGGGAGGCAGCAGTGGAGGCGGCGGGGGCGGCGGCGGTGCCGTGG CCGCACTCTCCGCTGCGCTCGAGGCCTTCCGGCCGGACCTGGTGATGATC TCCGCCGGCCTGGACGGGAGGAAAGGGGACCCGTGTGGGCGGGGGGACCT GGTGGCCGAGGATTTCGAGTGGCTAACGCTAGAGGTGCGTGCGGAGGGGA GGAAAAACCTGTTTTTTTTAGTATGGGCATGCGTGTGTGTTAGAAGGCAC AGAGAGATGGGGGATTCGACCTGACTAATCATATTATTGAGGTATCAAAG GTATGTGTGCAACCCGTTGCCAAAAACAGACGGCAGTTTTGGTGGTCGAG GCTTGGCCGAAGCACAGGACAAGCCACCCTGGGGTGGGAGGGCGGGATGT AGAATTCTACCCGCCCCCGACGAGTTGCTCAGTTGGTCGAATTCACCACC TTGTGTGTTGGGGTAGCCCGTACCCTTCTACAACCTTACTCCGCCCCCAT GCACACCCTAACCCAACCCACGGCACCGCAGGTGGTAAAGATGGCCGAGC GCTTGTGCGGCGGGCGAGTGGTTTCCGTCATGGAGCGTCACTGCGTCGCG GCGCAGGCGGGCACGAACGCCGACCCCGGGGGGGGGCTGCCGCCGGTTAC CACGGCGGCGGCGGAGGTGGGGGGGGGTCCTGAGAAAGAAGGGGGTCCAC GGAACGGTGCTGCCTGGCGCGACGACGGCTCCGACGCCATGGAGACCAGC GGCGACGGCGGCAGCGGCGAGGACGGGGCTGGGGAAGAAGCAACGCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8496:910..4907-

>mRNA_Ecto-sp13_S_contig8496.19888.1 ID=mRNA_Ecto-sp13_S_contig8496.19888.1|Name=mRNA_Ecto-sp13_S_contig8496.19888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2049bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8496:910..4907- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGCGGCGTCGGCGGCAGCGGGCGAGGCGCGTCATCCCGGGAGGACGA
GAAGCCTGTGGGGGTTGCGGGGGGGGCTGCGGCGGCGGGTAGTAGTGATT
CCGAGAAGGAGACGACTAAGGAGTTGTTGTCGTCCAAGACCGCCTCTGAC
AACGGCAAAGAGGGCTCTAGGTCGCCCGCAGCGGCAGCGGCGGCGGCGGC
GGCGGCGACTTCTGGCGGTGGCGTGCCCGCGAAGGAGGGCGGCGCTTCCC
CTGCGACTGCCGCTGCTAAGCCCTCCGCAACCGCAAACGGGGGCTGCGGG
GAGAGCAACGGTTCCCCCGCTTCTATACCTTCCACCGCTGCGGCCGCTAC
TAAGGCGTCGACTGCCGCCGGTGGTGCGCCAACCACCGCGGCGGCGACGG
GGAAAGGCGGCGCTGGTTCCGAAGAAGGCGGAGCGACGGCGGCGGGAGCT
TCGGCACCGGCGCTGGCGGCAACCGGAGCATGTGCTCCTGCGCGTCCCTC
CTTGGCCATAATCACCACGTCCACGGCCTCCGCTCTCGCGGCACCGGCGC
TGGCAGTAGAAGTCCCTCCCCCCGGGGAGGACGGTGCAAGAGTGGGGCGC
GCAAACAGCAACCCGGTCGGAGGGGGGGTACGGTTCATCCAGAGGGACCT
GGAAGCGGCCCAGCTGATGGTCCGGGCTCGGAAGCTCGACCTGGCCGCCA
GGGAGTGGGTCGGTCTGCGGTGCCTCCTCTTGAGGCGTGCCACCGCTGCC
GCCGCCGCCGCCGCTCCCGTCCCTCCGTCCCTTCGAGGTGGTTCGACCCT
GGTTCTTAGGCCGGCCGCCGCCCCCTGTGAAGCATCCAATGACGGTGGTG
GTGCCGACAGCACCGCCGCCGGTGATGACGAGAGCAACAACAACAAGGCC
GGCAAGCCGAAGAGTACCGCCAAGAGCAACAACAACCATAGCGCCTCCTC
CTTCACCAAGGCGGCTACGGCGGTCAGGCGTTCGTGGTCGAAGGAGCTAG
ACGCGGCCCTGCAGGCGTCGCCGGAAGATGCCGGTCTGGTGGTGGAGAGC
CCCCAGGAGGCCGTACCCCCTGGCGGCGGGTGTGGTGAGGAGGCCAGGGT
GGGCTGGGGTGGCTGGGGGTCCGGCGGTGGCGAAAAGCGGTACCTCGCCC
AAGCACACACACAGGAGTTCCTCGCGCACATGTCCGCCATGGGCCGACAG
GAGTGGGGCGCCGCTTCCGCCTCGGCGGCGTGCGTCGTGAGAGGCGTGTC
TGCCGTTCTCTCCGGCAGGTGCACGAACGCTCTCTGCCTCCTGGAAAATC
CGGGGAGGCATGCTCCCAGCGGGGGTTACTCAGTTGGGCACGGGAGTGGG
GTCCCGAAGCTGAAAGAGGGGGCGTGCTGCTCTGTGAACAGCGTCGCCGT
GGGTGCACTCTACGCACACATGCAGTGGTCCGTGGGGCGCGTGGCCGTGG
TGGACTTCGGCACTGACCTCGCGACCGGCACCGCGGACATCCTTTGCCGC
ACGCTGGACCCAGCCTTCCTCTACGCTACCGTTGCCGTGTCCGACGCCGC
AACTGCCGCCGCAGGGGTGGGGCAGCAGCAGCAGCGGCTCACCCGGGCGG
CGCTGGGAGGCAGCAGTGGAGGCGGCGGGGGCGGCGGCGGTGCCGTGGCC
GCACTCTCCGCTGCGCTCGAGGCCTTCCGGCCGGACCTGGTGATGATCTC
CGCCGGCCTGGACGGGAGGAAAGGGGACCCGTGTGGGCGGGGGGACCTGG
TGGCCGAGGATTTCGAGTGGCTAACGCTAGAGGTGGTAAAGATGGCCGAG
CGCTTGTGCGGCGGGCGAGTGGTTTCCGTCATGGAGCGTCACTGCGTCGC
GGCGCAGGCGGGCACGAACGCCGACCCCGGGGGGGGGCTGCCGCCGGTTA
CCACGGCGGCGGCGGAGGTGGGGGGGGGTCCTGAGAAAGAAGGGGGTCCA
CGGAACGGTGCTGCCTGGCGCGACGACGGCTCCGACGCCATGGAGACCAG
CGGCGACGGCGGCAGCGGCGAGGACGGGGCTGGGGAAGAAGCAACGCCT
back to top