mRNA_Ecto-sp13_S_contig8491.19885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8491.19885.1
Unique NamemRNA_Ecto-sp13_S_contig8491.19885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Match: D7G1K7_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K7_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 8.350e-133
Identity = 177/192 (92.19%), Postives = 184/192 (95.83%), Query Frame = 1 
Query:    1 MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDFAELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNVTGSKITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS 576
            MDCGDFVHAGCHNDGCNP+VQLRFPGVLPVEPLKVDYT ARD+AELEEDF ELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLV I RNVTGSKITRDVTFPLDDLEL+T+EA GTPTTTHYMAVAVMQHWGP+CTSGHNVTLVRKD  AGS+WWLCNDED+LSVSSACV RNAVAVLYRRVPDS
Sbjct:    1 MDCGDFVHAGCHNDGCNPIVQLRFPGVLPVEPLKVDYTSARDVAELEEDFGELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVPIFRNVTGSKITRDVTFPLDDLELITTEAGGTPTTTHYMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSDWWLCNDEDILSVSSACVARNAVAVLYRRVPDS 192
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BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Match: D7G1K0_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K0_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.020e-114
Identity = 177/207 (85.51%), Postives = 183/207 (88.41%), Query Frame = 1 
Query:    1 MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDFAELMQG---------------IEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNVTGSKITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS 576
            MDCGDFVHAGCHNDGCNP+VQLRFPGVLPVEPLKVDYT ARD+AELEEDF ELMQG               IEDWEGCASHACPAFYH EEKKTLQLGTSPQSLLV I RNVTGSKITRDVTFPLDDLEL+T+EA GTPTTTHYMAVAVMQHWGP+CTSGHNVTLVRKD  AGSEWWLCNDED+LSVSSACV RNAVAVLYRRVPDS
Sbjct: 1719 MDCGDFVHAGCHNDGCNPIVQLRFPGVLPVEPLKVDYTSARDVAELEEDFGELMQGVKDSGKTELSFLLNNIEDWEGCASHACPAFYHTEEKKTLQLGTSPQSLLVPIFRNVTGSKITRDVTFPLDDLELITTEAHGTPTTTHYMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSEWWLCNDEDILSVSSACVARNAVAVLYRRVPDS 1925
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BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Match: A0A6H5K8G9_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G9_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.800e-85
Identity = 144/196 (73.47%), Postives = 155/196 (79.08%), Query Frame = 1 
Query:    1 MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDFAELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNV----TGSKITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS 576
            MDCGDFV AGCHNDGCN VV+LRFPGVLPVEPLKVDYT ARD+AELEEDF ELM+ ++D                       G +  S L+   R++    T SKITRDVTFPLDDLELLT+EADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKD KAGSEWWLCNDED+LSVSSACVTRNAVAVLYRRVPDS
Sbjct: 1463 MDCGDFVFAGCHNDGCNHVVELRFPGVLPVEPLKVDYTSARDVAELEEDFGELMESVKD----------------------SGKTELSFLLNNVRSLSPCLTTSKITRDVTFPLDDLELLTTEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDSKAGSEWWLCNDEDILSVSSACVTRNAVAVLYRRVPDS 1636
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1K7_ECTSI8.350e-13392.19Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
D7G1K0_ECTSI1.020e-11485.51USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8G9_9PHAE1.800e-8573.47USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8491contigEcto-sp13_S_contig8491:3556..6760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score62.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog655981.L8G5X0
Preferred nameDOA4
Model size579
KEGG koko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000131,GO:0000502,GO:0002039,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005768,GO:0005829,GO:0005933,GO:0005935,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006897,GO:0006900,GO:0006950,GO:0006974,GO:0006996,GO:0007032,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010216,GO:0010256,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010992,GO:0010995,GO:0012505,GO:0015711,GO:0015748,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016043,GO:0016050,GO:0016192,GO:0016569,GO:0016570,GO:0016578,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019899,GO:0019941,GO:0022411,GO:0030162,GO:0030163,GO:0030427,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031410,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032088,GO:0032204,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032984,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0035520,GO:0035616,GO:0035871,GO:0036211,GO:0036459,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042592,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043433,GO:0043624,GO:0043632,GO:0043933,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045861,GO:0045935,GO:0046483,GO:0046618,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051261,GO:0051276,GO:0051503,GO:0051603,GO:0051716,GO:0060255,GO:0061024,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070676,GO:0071108,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097708,GO:0098657,GO:0101005,GO:0140096,GO:1901264,GO:1901360,GO:1901535,GO:1901537,GO:1901564,GO:1901565,GO:1901575,GO:1901799,GO:1902494,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1904353,GO:1904669,GO:1905368,GO:1905369,GO:1990380,GO:2000058,GO:2000059,GO:2000112,GO:2001141
Exons6
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs20YXJ@147548,38DC9@33154,3NX9E@4751,3QJJK@4890,KOG1868@1,KOG1868@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-07_001400.1
EC3.4.19.12
Cds size579
COG Functional cat.O
Best tax levelLeotiomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8491.19885.1prot_Ecto-sp13_S_contig8491.19885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8491 3556..6760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464119.0822723-CDS-Ecto-sp13_S_contig8491:3555..36091681464119.0822723-CDS-Ecto-sp13_S_contig8491:3555..3609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8491 3556..3609 +
1681464119.0976944-CDS-Ecto-sp13_S_contig8491:4215..43291681464119.0976944-CDS-Ecto-sp13_S_contig8491:4215..4329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8491 4216..4329 +
1681464119.1089306-CDS-Ecto-sp13_S_contig8491:4865..49221681464119.1089306-CDS-Ecto-sp13_S_contig8491:4865..4922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8491 4866..4922 +
1681464119.119767-CDS-Ecto-sp13_S_contig8491:5269..53401681464119.119767-CDS-Ecto-sp13_S_contig8491:5269..5340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8491 5270..5340 +
1681464119.1319573-CDS-Ecto-sp13_S_contig8491:6073..61471681464119.1319573-CDS-Ecto-sp13_S_contig8491:6073..6147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8491 6074..6147 +
1681464119.1428921-CDS-Ecto-sp13_S_contig8491:6551..67601681464119.1428921-CDS-Ecto-sp13_S_contig8491:6551..6760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8491 6552..6760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8491.19885.1

>prot_Ecto-sp13_S_contig8491.19885.1 ID=prot_Ecto-sp13_S_contig8491.19885.1|Name=mRNA_Ecto-sp13_S_contig8491.19885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDF
AELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNVTGS
KITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTL
VRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS*
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mRNA from alignment at Ecto-sp13_S_contig8491:3556..6760+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8491.19885.1 ID=mRNA_Ecto-sp13_S_contig8491.19885.1|Name=mRNA_Ecto-sp13_S_contig8491.19885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3205bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8491:3556..6760+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGCGGTGACTTCGTCCACGCCGGCTGCCACAACGACGGCTGCAA
CCCCGTGAGTGATTACCGTTAGAAGCGGTGTTGCCATTGTCGTTATCATC
TTGTCGTTCCGATAAGTGTTACCACTGCCACGTACAAGTCGGGCGCGGAG
CGGGGTGACCACAAGTGCCCAATCACACGTAATTCTACACAGCAACAGTC
GAGGTAGGATGCCGGCATGTTCAGACCCTTGCGGCACGCGCCCTCAAAAT
GAATCTGTGAACGTAGTAGGGTGGGCACTCTCTCGATAAGCACTCCATGT
CTCAGATTGACCAGCCATACAGATGCCTCTGCCAAGGGATGCAATGCCAG
CCGCATTTGCTCTCGTCCACATGTCACCGCTTGAGGTCAGAAACGGCGCG
TTGGTACACAAAATAGCGGGGTAAGCATGTGACCGAACGAAGTAGTACTT
TATCCAAAGGTTCGTTTCGCGAGTGTTTCGTGACCGATCAAACAATACCT
CCGAGGTCCGGGGATGATACCTGCGGCCAGTGACCTCTTGGCTAGCCCGG
GCCGATTAATGACCCACGTACGAACAAGTGAATTGGGTCTCGACCCGTGT
GATGCCCGGAAACTAAACTCGAGTGGTCCTCGGTTCCTGTATCCCTGTGT
GTCGCTGCAGGTCGTCCAGCTGCGTTTCCCAGGGGTTCTGCCCGTGGAGC
CCTTGAAGGTGGACTACACCATCGCTAGAGATATCGCAGAGCTGGAGGAA
GACTTCGCGGAGCTGATGCAGGGCGTCAAGGACAGCGGCAAGACCGAGCT
CTCCTTCTTGCTCAACAACGTGCGTTCACAGTCCCCTTGCTCGATGACGT
ACGTAGCCAGACCCCCAACCCCACCCGCTTCACAGAAAGGAGTAGGAATC
GCAAGCAACACTGCACATCGTCCTTGCATGCCAATCTCTTCTTCCAAGAG
AGACGCATTCATCAACTCTACAGCCCGGGGAAGAACGTCCTTAACCTTCG
CAAAGAGTGCCCGGGTAAAGCGTACCGATGCTTTTGTCACAGCGGGCGCG
TGCTAACAAAGGCCATGGTCCCGTTTCGCGGAAAGCATGTTCGGTACACC
CCGAGCGGGTGCGTCTGTCCGTCCATGATGGACGGTGTGCGGTAGAGTTG
AGAATGCTACCCAAAGACAATACTACACTACAGTATACGCAAAGATGATA
GACAAGGGGCTACATGACACTTCAACGAAACAATTCACCTGAACCACTTT
TGCGGATTAACATGCGCATGGCCTGCGTTCCGTTGTGTACGTGCTATCTG
TCTTCCCCAGATCGAGGACTGGGAAGGTTGCGCTAGCCACGCCTGCCCTG
CGTTCTACCACGCAGAGGTTGGTGACACCATGGCCTTCTCTGATTTCGCT
CGTTTCTCCTCGGCGGTGGAGGGAAAGTAAAGAGCCTCCTCGCGCCGTCG
GTAGGATTGTTGTACATGGCCGATCTACTGGTTGGATGAAACATCGAAGG
TCTCCCTCAACGTTTCGCGCAAGTCAAGACCCACGTTCCTGGGCATTCTG
CAAGCGCGACGCACCCTGAGGATCCTTGTGTTGGGGGTGTCTCATGGGAC
GCCAGAGAAGTCTGTTGCGATGAGAGGCGTATGGAACTCGCTGCGCGAGA
CTTGTTCTCAAATCTTTGTAGGCGTGACGCGCTCCTTCACATCCGCACAT
CTTGCACATCACAGGAGAAGAAGACGCTCCAGCTCGGGACTTCGCCGCAG
TCGCTCTTGGTCCTGATCAATCGGAACGTGACTGGGTGAGACTTCAATCT
CCTACGCTGTGCACGGCGTAGTGTACCTTCAGCAGTTCGTTGCACAATCT
TGCCACCGACGACACGCCTGCACCGATATTTTTGGATGAACGTCGCCTTA
AGAGAAGGTTCCAATCGTCGGAAGTCGAGAATATTGAGTTAATAAGCTTT
CAGAGTCAACCACCTAACGACGAGCTTGCCGGGAAATCATCGAAATGCCT
AGCTTCAGCCCGGCTACCGTGATGGAGCTTGAGGCACTCGGGGTTTGTGT
TTCTGTGGTGATGCTTCATCTAGTGTTCCTGCATGCTCTCTTCCGCACTC
TCGCCGATGCTGCACGCTAGACAACCCCAAAATAGAGATTGTCGCGAAGG
GTGACTGTCCATCTTGGCATTTCGCGCATGCATGCTCATAAACAGGCAGG
ATCTTTGAGGCAAGCGCCGTAGTGATGCAGACTGGTCTGGGATTCACGAA
GAGATCCATGCATACGTTGGTGATGCCCTTTGGCTGACTCGCGACTGGCC
TTTTACCGTCTGGTTGGTATTCCTCACATAGGCAAAAATAGCGGAGATCA
TTCAATGTGGTTATCATTGTTGTTTTTGTTGCTGCTGCTGCTGCTGCTGC
TGCTGTCGTTGTTGATAGTGATGATGATGGTCGGTTCCCGGCGCTACTGT
TGTTGCCACTATCTTCGCCGAGCATATCTCCATGGATTCGCTTTGACGTT
CGGAACGTGTTTCGCCAGGTCCAAGATCACCAGGGACGTGACATTCCCCC
TGGACGACTTGGAGCTGCTCACAAGCGAAGCCGACGGCACACGTGAGTGA
CGAGCCTGCCCACGCCTCCAACTTCGTGTTCTATGGCCGACGATCGAAAC
CACACATACGGCTAGCAGTTACATCCCGCGAGGGGCTACGTGCACACCCC
CGGTAACTTCTACCGTATGGGCGGGCCGGGATGCCGGGACCAGAACTACC
CTTCATCTTGCTTGACCCCGCACATGGCTGGTCCGCATCTCGCATTTGCT
GCTGTAGGAGTACACTTTCCCCAGGGGTGGACGCGACCGACCGGTGCTAC
ACATATCGCTCCACGATTTTCCAGCGCTTCCCAAAGTCGTAGCCTGTTGG
TTTAAGCCTCGTCCCCCATCTTGAACTGACGAGTATTTCACTTTCCCTTC
GCCGTGTTCTCTGTATTTTGCTTGACTCGCAACTACAACTCGACAGCAAC
AACGACGCACTACATGGCGGTCGCTGTCATGCAGCACTGGGGTCCCTACT
GCACCAGCGGCCACAACGTGACCCTTGTGCGGAAGGACTTGAAGGCAGGG
TCGGAGTGGTGGCTGTGCAACGACGAGGACGTCCTCTCGGTCTCGTCCGC
TTGCGTCACTCGTAACGCCGTGGCGGTGTTGTACCGCCGGGTGCCGGATT
CCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8491:3556..6760+

>mRNA_Ecto-sp13_S_contig8491.19885.1 ID=mRNA_Ecto-sp13_S_contig8491.19885.1|Name=mRNA_Ecto-sp13_S_contig8491.19885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8491:3556..6760+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGCGGTGACTTCGTCCACGCCGGCTGCCACAACGACGGCTGCAA
CCCCGTCGTCCAGCTGCGTTTCCCAGGGGTTCTGCCCGTGGAGCCCTTGA
AGGTGGACTACACCATCGCTAGAGATATCGCAGAGCTGGAGGAAGACTTC
GCGGAGCTGATGCAGGGCATCGAGGACTGGGAAGGTTGCGCTAGCCACGC
CTGCCCTGCGTTCTACCACGCAGAGGAGAAGAAGACGCTCCAGCTCGGGA
CTTCGCCGCAGTCGCTCTTGGTCCTGATCAATCGGAACGTGACTGGGTCC
AAGATCACCAGGGACGTGACATTCCCCCTGGACGACTTGGAGCTGCTCAC
AAGCGAAGCCGACGGCACACCAACAACGACGCACTACATGGCGGTCGCTG
TCATGCAGCACTGGGGTCCCTACTGCACCAGCGGCCACAACGTGACCCTT
GTGCGGAAGGACTTGAAGGCAGGGTCGGAGTGGTGGCTGTGCAACGACGA
GGACGTCCTCTCGGTCTCGTCCGCTTGCGTCACTCGTAACGCCGTGGCGG
TGTTGTACCGCCGGGTGCCGGATTCCTAG
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