prot_Ecto-sp13_S_contig8491.19885.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8491.19885.1
Unique Nameprot_Ecto-sp13_S_contig8491.19885.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length193
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Match: D7G1K7_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K7_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 8.350e-133
Identity = 177/192 (92.19%), Postives = 184/192 (95.83%), Query Frame = 0 
Query:    1 MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDFAELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNVTGSKITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS 192
            MDCGDFVHAGCHNDGCNP+VQLRFPGVLPVEPLKVDYT ARD+AELEEDF ELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLV I RNVTGSKITRDVTFPLDDLEL+T+EA GTPTTTHYMAVAVMQHWGP+CTSGHNVTLVRKD  AGS+WWLCNDED+LSVSSACV RNAVAVLYRRVPDS
Sbjct:    1 MDCGDFVHAGCHNDGCNPIVQLRFPGVLPVEPLKVDYTSARDVAELEEDFGELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVPIFRNVTGSKITRDVTFPLDDLELITTEAGGTPTTTHYMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSDWWLCNDEDILSVSSACVARNAVAVLYRRVPDS 192
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BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Match: D7G1K0_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K0_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.020e-114
Identity = 177/207 (85.51%), Postives = 183/207 (88.41%), Query Frame = 0 
Query:    1 MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDFAELMQG---------------IEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNVTGSKITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS 192
            MDCGDFVHAGCHNDGCNP+VQLRFPGVLPVEPLKVDYT ARD+AELEEDF ELMQG               IEDWEGCASHACPAFYH EEKKTLQLGTSPQSLLV I RNVTGSKITRDVTFPLDDLEL+T+EA GTPTTTHYMAVAVMQHWGP+CTSGHNVTLVRKD  AGSEWWLCNDED+LSVSSACV RNAVAVLYRRVPDS
Sbjct: 1719 MDCGDFVHAGCHNDGCNPIVQLRFPGVLPVEPLKVDYTSARDVAELEEDFGELMQGVKDSGKTELSFLLNNIEDWEGCASHACPAFYHTEEKKTLQLGTSPQSLLVPIFRNVTGSKITRDVTFPLDDLELITTEAHGTPTTTHYMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSEWWLCNDEDILSVSSACVARNAVAVLYRRVPDS 1925
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BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Match: A0A6H5K8G9_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G9_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.800e-85
Identity = 144/196 (73.47%), Postives = 155/196 (79.08%), Query Frame = 0 
Query:    1 MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDFAELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNV----TGSKITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS 192
            MDCGDFV AGCHNDGCN VV+LRFPGVLPVEPLKVDYT ARD+AELEEDF ELM+ ++D                       G +  S L+   R++    T SKITRDVTFPLDDLELLT+EADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKD KAGSEWWLCNDED+LSVSSACVTRNAVAVLYRRVPDS
Sbjct: 1463 MDCGDFVFAGCHNDGCNHVVELRFPGVLPVEPLKVDYTSARDVAELEEDFGELMESVKD----------------------SGKTELSFLLNNVRSLSPCLTTSKITRDVTFPLDDLELLTTEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTLVRKDSKAGSEWWLCNDEDILSVSSACVTRNAVAVLYRRVPDS 1636
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8491.19885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1K7_ECTSI8.350e-13392.19Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
D7G1K0_ECTSI1.020e-11485.51USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8G9_9PHAE1.800e-8573.47USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 72..181
e-value: 7.3E-8
score: 32.2
NoneNo IPR availableGENE3D3.90.70.10coord: 26..190
e-value: 3.8E-15
score: 58.1
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 1..189
score: 12.551
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 54..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8491contigEcto-sp13_S_contig8491:3556..6760 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8491.19885.1mRNA_Ecto-sp13_S_contig8491.19885.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8491 3556..6760 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8491.19885.1 ID=prot_Ecto-sp13_S_contig8491.19885.1|Name=mRNA_Ecto-sp13_S_contig8491.19885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MDCGDFVHAGCHNDGCNPVVQLRFPGVLPVEPLKVDYTIARDIAELEEDF
AELMQGIEDWEGCASHACPAFYHAEEKKTLQLGTSPQSLLVLINRNVTGS
KITRDVTFPLDDLELLTSEADGTPTTTHYMAVAVMQHWGPYCTSGHNVTL
VRKDLKAGSEWWLCNDEDVLSVSSACVTRNAVAVLYRRVPDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf