mRNA_Ecto-sp13_S_contig8487.19881.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8487.19881.1
Unique NamemRNA_Ecto-sp13_S_contig8487.19881.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.230e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   16 QGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLFE 138
            QGKYE+AEPL+RRSL IDE+ Y PDHPNVATGLSNLAGL E
Sbjct:  154 QGKYEEAEPLHRRSLAIDEEVYGPDHPNVATGLSNLAGLLE 194
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.610e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 FTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSN 120
            F FQGKY++AEPLY+RSL IDE  Y PDHP+VAT L+N
Sbjct:  348 FMFQGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNN 385
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 9.850e-8
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 FLFTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLFE 138
            FLF  QGKY +AEPLY RSL I E    P+HP+VAT L N A L E
Sbjct:  688 FLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.400e-6
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    4 LFTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLFE 138
            +F     ++ AEPLY RSL IDE  Y PDHP VAT L+N A L+E
Sbjct:  111 VFEILRNFQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAALYE 155
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A2K2ZIL2_9CHRO (CHAT domain-containing protein n=1 Tax=Euhalothece sp. KZN 001 TaxID=1884791 RepID=A0A2K2ZIL2_9CHRO)

HSP 1 Score: 54.7 bits (130), Expect = 4.030e-6
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   16 QGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLFE 138
            QGKY +AEPLY ++L + +  Y  DHP+VAT L+NLAGL+E
Sbjct:  239 QGKYSEAEPLYEQALAMRKRLYDGDHPDVATSLNNLAGLYE 279
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A084Y082_9PROT (Photosystem I assembly protein Ycf3 n=1 Tax=Candidatus Accumulibacter sp. SK-01 TaxID=1457154 RepID=A0A084Y082_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 5.390e-6
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LFTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGL 132
            LF  QG+   AEPL RRSL I E    P+HP VATGL+NLAGL
Sbjct:  166 LFQMQGRTADAEPLNRRSLAIKEKALGPEHPGVATGLNNLAGL 208
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: UPI001E5491FA (tetratricopeptide repeat protein n=1 Tax=Pseudanabaena sp. 'Roaring Creek' TaxID=1681830 RepID=UPI001E5491FA)

HSP 1 Score: 50.1 bits (118), Expect = 8.380e-6
Identity = 19/44 (43.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    4 LFTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLF 135
            ++  QG+Y++AEPLY++++ + ++     HPNVAT ++NLAGL+
Sbjct:    1 MYYSQGRYKEAEPLYKQAIALMQEILGERHPNVATSINNLAGLY 44
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A1I3XVU7_9DELT (Tfp pilus assembly protein PilF (Fragment) n=1 Tax=Desulfomicrobium apsheronum TaxID=52560 RepID=A0A1I3XVU7_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 1.760e-5
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 LFTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLF 135
            L+  QG Y +AE LY+RSL I E    PDHP+VAT LSNLA L+
Sbjct:    1 LYDNQGDYAQAESLYKRSLAIREKALGPDHPDVATSLSNLAELY 44
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.430e-5
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   10 TFQGKYEKAEPLYRRSLVIDEDFYVPDHP 96
             FQGKYE+AEPLY+RSL IDE  Y PDHP
Sbjct:  502 AFQGKYEEAEPLYKRSLAIDEKVYGPDHP 530
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BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Match: A0A7S3NLJ5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLJ5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.560e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   28 EKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLFE 138
            ++A+PLY R++ I E  Y P+HP+VATGL+NLAGL E
Sbjct:    1 DEAKPLYERAIEIYEKVYDPNHPHVATGLNNLAGLLE 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8487.19881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G180_ECTSI3.230e-1382.93TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KIY6_9PHAE5.610e-971.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI9.850e-860.87NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5LI51_9PHAE3.400e-655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2K2ZIL2_9CHRO4.030e-658.54CHAT domain-containing protein n=1 Tax=Euhalothece... [more]
A0A084Y082_9PROT5.390e-662.79Photosystem I assembly protein Ycf3 n=1 Tax=Candid... [more]
UPI001E5491FA8.380e-643.18tetratricopeptide repeat protein n=1 Tax=Pseudanab... [more]
A0A1I3XVU7_9DELT1.760e-559.09Tfp pilus assembly protein PilF (Fragment) n=1 Tax... [more]
A0A6H5JLW6_9PHAE2.430e-575.86NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3NLJ5_9STRA2.560e-559.46Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8487contigEcto-sp13_S_contig8487:5862..6819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.9
Seed ortholog evalue5.7e-11
Seed eggNOG ortholog2880.D7G180
Model size372
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size372
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464118.6738079-CDS-Ecto-sp13_S_contig8487:5861..60051681464118.6738079-CDS-Ecto-sp13_S_contig8487:5861..6005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8487 5862..6005 +
1681464118.6902933-CDS-Ecto-sp13_S_contig8487:6284..64101681464118.6902933-CDS-Ecto-sp13_S_contig8487:6284..6410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8487 6285..6410 +
1681464118.7002447-CDS-Ecto-sp13_S_contig8487:6717..68191681464118.7002447-CDS-Ecto-sp13_S_contig8487:6717..6819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8487 6718..6819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8487.19881.1prot_Ecto-sp13_S_contig8487.19881.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8487 5862..6819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8487.19881.1

>prot_Ecto-sp13_S_contig8487.19881.1 ID=prot_Ecto-sp13_S_contig8487.19881.1|Name=mRNA_Ecto-sp13_S_contig8487.19881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
FLFTFQGKYEKAEPLYRRSLVIDEDFYVPDHPNVATGLSNLAGLFESQGK
HEAAEPLYRRSLAIDEEVYDPDHPEVAADLNNLAGLLETQGKHNEAGPLY
ERSQAIREEVRGPEHPDVATTLNN
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mRNA from alignment at Ecto-sp13_S_contig8487:5862..6819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8487.19881.1 ID=mRNA_Ecto-sp13_S_contig8487.19881.1|Name=mRNA_Ecto-sp13_S_contig8487.19881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=958bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8487:5862..6819+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCTATTCACATTCCAGGGCAAGTATGAAAAGGCCGAGCCTCTGTACAG
ACGCTCGCTAGTCATCGATGAGGATTTTTACGTTCCTGACCACCCGAATG
TTGCTACAGGTCTCAGCAACTTGGCGGGGCTATTTGAGAGCCAGGTTAGA
ACCGTTCAATGATAATAATTTGATGCTTCTACTGTAGAAGAGCATGTTCC
TCGTCAGGTGCAGAACTCGATATGACTGCAATTAAACTCTCTGCCGTGCT
GTTCAACGCGTTTTTTTACCTCGTATGCTGAGACAGAGCCATCTGTGAAC
AGGCGCAAGTCTTGTGAGGGAATATTCTGACCTATGGCAGCCAGACGTCG
CCCAGGCATGTGTTTTCTCGCACGTTCAGCGTCACCAAACGAATTCTCCC
CTTCCGTTCCCGTCGCATTCCAGGGCAAGCATGAAGCGGCCGAGCCTCTG
TACAGACGCTCGCTGGCCATCGATGAGGAAGTTTACGATCCTGACCACCC
GGAAGTCGCTGCAGACCTCAACAACTTGGCGGGGTTGTTAGAGACCCAGG
TGAGGATGCTTCAATTTAGATCCTACAGATGAATATATTCCTCACCAGTT
CGAGATCTCGATATGACTGAAGTTGGACCTCTGCCACGCGAAAGACCACG
TTTCACAGCAAGTACGCTGGGATAGAGCCGGTTTATGAGCGATCGTGTCC
CACACGAGGAATTGTACTGGACCTGTAGCACACTGGCATAGCCCAGGCGC
TCAACGACCGGGCGGGCGTGTTGAGAGCCTATTCTTCGAGTTGTAGATCC
CATTTCAATTCCACTGTAAGAACGATGCTGCCAAGCTGTCTGCGACTGCA
TGCCAGGGCAAGCACAATGAGGCCGGGCCACTGTACGAGCGGTCGCAGGC
TATACGAGAGGAGGTCCGAGGTCCGGAGCACCCCGATGTGGCCACGACGC
TCAACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8487:5862..6819+

>mRNA_Ecto-sp13_S_contig8487.19881.1 ID=mRNA_Ecto-sp13_S_contig8487.19881.1|Name=mRNA_Ecto-sp13_S_contig8487.19881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8487:5862..6819+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCTATTCACATTCCAGGGCAAGTATGAAAAGGCCGAGCCTCTGTACAG
ACGCTCGCTAGTCATCGATGAGGATTTTTACGTTCCTGACCACCCGAATG
TTGCTACAGGTCTCAGCAACTTGGCGGGGCTATTTGAGAGCCAGGGCAAG
CATGAAGCGGCCGAGCCTCTGTACAGACGCTCGCTGGCCATCGATGAGGA
AGTTTACGATCCTGACCACCCGGAAGTCGCTGCAGACCTCAACAACTTGG
CGGGGTTGTTAGAGACCCAGGGCAAGCACAATGAGGCCGGGCCACTGTAC
GAGCGGTCGCAGGCTATACGAGAGGAGGTCCGAGGTCCGGAGCACCCCGA
TGTGGCCACGACGCTCAACAAC
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